Wall clock time and date at job start Tue Mar 31 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 O 1.21274 * 120.00042 * 119.72042 * 4 2 1 6 6 N 1.34777 * 119.99766 * 299.99577 * 4 2 1 7 7 C 1.46496 * 120.00266 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47425 * 180.02562 * 7 6 4 9 9 C 1.53516 * 111.15538 * 299.11334 * 8 7 6 10 10 C 1.54184 * 106.58898 * 240.87917 * 9 8 7 11 11 C 1.54739 * 104.35005 * 335.43384 * 10 9 8 12 12 C 1.54665 * 111.22675 * 180.02562 * 8 7 6 13 13 H 1.09005 * 112.40732 * 19.49139 * 12 8 7 14 14 N 1.47252 * 106.10191 * 256.40386 * 12 8 7 15 15 C 1.36944 * 126.52357 * 150.11390 * 14 12 8 16 16 H 1.08000 * 119.99499 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00173 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00320 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99822 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.46948 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46947 * 119.99803 * 19 17 15 22 22 H 1.48499 * 109.47048 * 239.99781 * 19 17 15 23 23 C 1.47157 * 106.96166 * 330.07726 * 14 12 8 24 24 C 1.53672 * 111.17489 * 62.60264 * 8 7 6 25 25 C 1.52999 * 109.47317 * 239.99354 * 2 1 3 26 26 F 1.39897 * 109.47114 * 300.00482 * 25 2 1 27 27 F 1.39905 * 109.46699 * 60.00096 * 25 2 1 28 28 F 1.39895 * 109.47493 * 179.97438 * 25 2 1 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 32 32 H 0.96999 * 120.00043 * 0.02562 * 6 4 2 33 33 H 1.09004 * 109.47212 * 300.00463 * 7 6 4 34 34 H 1.09000 * 109.46684 * 60.00307 * 7 6 4 35 35 H 1.09004 * 110.04247 * 0.98703 * 9 8 7 36 36 H 1.08998 * 110.03999 * 122.43512 * 9 8 7 37 37 H 1.09001 * 110.79859 * 216.50310 * 10 9 8 38 38 H 1.08999 * 110.10982 * 94.02461 * 10 9 8 39 39 H 1.09000 * 110.64892 * 278.62549 * 11 10 9 40 40 H 1.08992 * 110.65122 * 155.53347 * 11 10 9 41 41 H 0.96997 * 120.00166 * 180.02562 * 18 17 15 42 42 H 1.09000 * 110.09675 * 150.06655 * 23 14 12 43 43 H 1.09004 * 110.09241 * 271.59931 * 23 14 12 44 44 H 1.09001 * 110.22978 * 241.06738 * 24 8 7 45 45 H 1.09004 * 110.22829 * 3.02137 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7254 -1.6994 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.1946 -0.9406 3.6508 8 6 1.6843 -0.2195 4.9000 9 6 2.1926 1.2281 4.9507 10 6 3.0333 1.3548 6.2370 11 6 2.4829 0.2461 7.1655 12 6 2.1773 -0.9166 6.1897 13 1 3.0418 -1.5563 6.0117 14 7 1.0247 -1.6685 6.7136 15 6 1.0704 -2.8289 7.4395 16 1 2.0226 -3.2792 7.6783 17 6 -0.1069 -3.4267 7.8673 18 7 -1.2673 -2.8782 7.5758 19 14 -0.0445 -5.0100 8.8568 20 1 1.3702 -5.4185 9.0483 21 1 -0.6808 -4.7916 10.1808 22 1 -0.7734 -6.0786 8.1275 23 6 -0.1856 -0.9354 6.3097 24 6 0.1496 -0.2526 4.9720 25 6 2.0400 -0.7214 -1.2491 26 9 1.5736 -2.0403 -1.2491 27 9 1.5737 -0.0619 -2.3915 28 9 3.4390 -0.7209 -1.2495 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1489 0.5387 2.5436 33 1 1.8309 -1.9682 3.6507 34 1 3.2846 -0.9410 3.6509 35 1 2.7995 1.4420 4.0708 36 1 1.3504 1.9182 5.0007 37 1 2.8984 2.3358 6.6924 38 1 4.0860 1.1793 6.0155 39 1 1.5726 0.5791 7.6641 40 1 3.2351 -0.0525 7.8955 41 1 -2.0900 -3.2958 7.8751 42 1 -1.0169 -1.6282 6.1787 43 1 -0.4377 -0.1863 7.0604 44 1 -0.2505 0.7611 4.9553 45 1 -0.2543 -0.8318 4.1416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107507208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:42 Heat of formation + Delta-G solvation = -195.271112 kcal Electronic energy + Delta-G solvation = -30612.033230 eV Core-core repulsion = 26020.681076 eV Total energy + Delta-G solvation = -4591.352154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -51.11027 -48.60620 -48.57266 -41.47812 -40.40426 -36.35896 -35.52659 -34.93994 -33.32004 -31.87432 -29.51227 -28.43816 -27.40967 -26.02063 -25.53580 -24.05497 -22.10293 -21.81964 -20.98378 -20.03052 -19.58024 -19.44119 -19.02070 -18.48507 -17.74467 -16.95032 -16.73514 -16.41269 -15.95885 -15.73862 -15.45372 -15.38269 -15.16738 -15.07129 -14.98337 -14.77240 -14.69840 -14.61397 -14.42829 -14.07492 -13.94387 -13.61665 -13.41678 -13.33824 -12.97392 -12.86311 -12.81331 -12.49682 -12.40465 -12.13915 -11.97195 -11.81597 -11.59994 -11.56321 -11.45153 -11.33764 -11.03691 -10.99574 -10.69242 -10.15265 -8.84618 -7.72378 -5.18450 1.40755 1.44999 1.46180 1.53593 1.55448 2.02134 2.49555 2.66961 3.01857 3.10942 3.32059 3.54730 3.67681 3.73182 3.78314 3.83645 3.99044 4.03591 4.34144 4.40969 4.50112 4.57816 4.64970 4.66181 4.66880 4.69803 4.80316 4.92963 4.98538 5.08883 5.13851 5.15906 5.20441 5.28043 5.35423 5.46423 5.51228 5.53279 5.61727 5.72661 5.91659 6.39922 6.42679 7.08524 7.15360 7.83589 8.49035 9.25260 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.003206 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.453344 B = 8732.600416 C = 9620.108795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 H 0.182 0.818 4 C 0.514 3.486 5 O -0.573 6.573 6 N -0.695 5.695 7 C 0.153 3.847 8 C -0.072 4.072 9 C -0.102 4.102 10 C -0.113 4.113 11 C -0.132 4.132 12 C 0.153 3.847 13 H 0.054 0.946 14 N -0.610 5.610 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.065 4.065 18 N -0.945 5.945 19 Si 0.971 3.029 20 H -0.270 1.270 21 H -0.292 1.292 22 H -0.294 1.294 23 C 0.138 3.862 24 C -0.116 4.116 25 C 0.465 3.535 26 F -0.190 7.190 27 F -0.174 7.174 28 F -0.188 7.188 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.419 0.581 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.245 0.755 42 H 0.082 0.918 43 H -0.016 1.016 44 H 0.089 0.911 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 15.047 -15.861 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 H 0.199 0.801 4 C 0.300 3.700 5 O -0.452 6.452 6 N -0.347 5.347 7 C 0.029 3.971 8 C -0.074 4.074 9 C -0.140 4.140 10 C -0.151 4.151 11 C -0.172 4.172 12 C 0.045 3.955 13 H 0.072 0.928 14 N -0.332 5.332 15 C -0.357 4.357 16 H 0.094 0.906 17 C -0.258 4.258 18 N -0.596 5.596 19 Si 0.801 3.199 20 H -0.195 1.195 21 H -0.220 1.220 22 H -0.221 1.221 23 C 0.013 3.987 24 C -0.155 4.155 25 C 0.410 3.590 26 F -0.171 7.171 27 F -0.156 7.156 28 F -0.169 7.169 29 H 0.076 0.924 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.258 0.742 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.002 0.998 44 H 0.108 0.892 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.771 14.141 -15.831 21.757 hybrid contribution -0.327 -1.279 0.846 1.568 sum 4.443 12.862 -14.986 20.242 Atomic orbital electron populations 1.21957 0.87401 1.04434 1.07076 1.22708 1.02599 1.03918 0.87885 0.80077 1.20334 0.80049 0.84257 0.85387 1.90815 1.39740 1.27539 1.87145 1.45660 1.52895 1.32106 1.04088 1.21108 0.98357 0.94809 0.82807 1.21863 0.95870 0.96620 0.93046 1.22208 1.00400 0.92883 0.98505 1.22230 0.99510 0.98152 0.95166 1.22870 0.99425 0.96707 0.98188 1.21985 0.90089 0.91554 0.91840 0.92766 1.44803 1.02232 1.24516 1.61627 1.19451 0.92926 0.98644 1.24700 0.90634 1.25473 0.95120 1.02208 1.02951 1.69896 0.96869 1.40997 1.51789 0.85102 0.77530 0.79557 0.77752 1.19480 1.21956 1.22141 1.21648 0.91891 0.93675 0.91529 1.22575 0.93961 1.00952 0.97970 1.20202 0.75376 0.77558 0.85830 1.93181 1.88387 1.38764 1.96795 1.93192 1.88367 1.80467 1.53533 1.93186 1.30550 1.96380 1.96796 0.92411 0.87314 0.87756 0.74234 0.94626 0.91500 0.89515 0.89868 0.90421 0.91084 0.93610 0.93349 0.94497 0.89998 0.99842 0.89215 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.85 71.98 0.64 -0.98 16 2 C -0.15 -2.21 2.71 -11.54 -0.03 -2.24 16 3 H 0.18 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.51 12.17 6.92 87.66 0.61 12.77 16 5 O -0.57 -19.81 14.83 -3.01 -0.04 -19.85 16 6 N -0.70 -14.30 4.73 -463.06 -2.19 -16.50 16 7 C 0.15 4.38 4.27 86.38 0.37 4.75 16 8 C -0.07 -2.07 0.65 -51.21 -0.03 -2.10 16 9 C -0.10 -2.07 5.62 31.17 0.18 -1.89 16 10 C -0.11 -2.56 6.83 31.59 0.22 -2.35 16 11 C -0.13 -4.40 6.37 31.81 0.20 -4.20 16 12 C 0.15 5.83 3.59 46.04 0.17 5.99 16 13 H 0.05 2.14 7.95 -2.38 -0.02 2.13 16 14 N -0.61 -30.02 2.98 -666.32 -1.99 -32.01 16 15 C -0.23 -12.64 10.33 84.03 0.87 -11.77 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 17 C -0.07 -3.68 5.49 84.86 0.47 -3.22 16 18 N -0.94 -55.59 10.06 21.65 0.22 -55.37 16 19 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 C 0.14 6.41 5.68 86.55 0.49 6.90 16 24 C -0.12 -3.73 5.81 31.12 0.18 -3.55 16 25 C 0.46 9.82 2.42 71.98 0.17 9.99 16 26 F -0.19 -5.16 15.87 44.97 0.71 -4.45 16 27 F -0.17 -3.10 16.80 44.97 0.76 -2.34 16 28 F -0.19 -4.75 16.41 44.97 0.74 -4.01 16 29 H 0.06 0.89 7.80 -2.39 -0.02 0.87 16 30 H 0.11 0.70 7.56 -2.39 -0.02 0.68 16 31 H 0.10 0.71 7.80 -2.39 -0.02 0.69 16 32 H 0.42 5.54 7.28 -92.71 -0.67 4.86 16 33 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 1.36 7.47 -2.39 -0.02 1.34 16 36 H 0.08 1.43 7.10 -2.39 -0.02 1.42 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.74 7.28 -2.39 -0.02 1.73 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.08 4.49 5.45 -2.39 -0.01 4.48 16 43 H -0.02 -0.81 7.71 -2.38 -0.02 -0.83 16 44 H 0.09 2.27 7.11 -2.39 -0.02 2.25 16 45 H 0.06 1.80 7.62 -2.38 -0.02 1.78 16 Total: -1.00 -73.70 361.24 5.06 -68.64 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.34 Total: 9.66 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 4.49 Total: 8.11 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -3.96 Total: -103.88 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.04 Total: -19.85 kcal Atomic # 9 Polarization: -13.01 SS G_CDS: 2.21 Total: -10.80 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.70 5.06 -68.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107507208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.627 kcal (2) G-P(sol) polarization free energy of solvation -73.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds