Wall clock time and date at job start Tue Mar 31 2020 18:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47339 * 2 1 4 4 C 1.50695 * 109.47272 * 240.00272 * 2 1 3 5 5 O 1.21286 * 120.00452 * 240.00245 * 4 2 1 6 6 N 1.34782 * 120.00175 * 59.99352 * 4 2 1 7 7 C 1.46496 * 120.00234 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47157 * 180.02562 * 7 6 4 9 9 C 1.53361 * 111.22705 * 299.53329 * 8 7 6 10 10 C 1.54279 * 106.46221 * 242.71952 * 9 8 7 11 11 C 1.56756 * 104.44897 * 334.12183 * 10 9 8 12 12 C 1.54570 * 111.31671 * 180.02562 * 8 7 6 13 13 H 1.08997 * 111.92755 * 18.72353 * 12 8 7 14 14 N 1.46889 * 107.36629 * 255.62608 * 12 8 7 15 15 C 1.36945 * 125.24865 * 181.61837 * 14 12 8 16 16 H 1.07999 * 120.00077 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99637 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99854 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46819 * 59.99973 * 19 17 15 21 21 H 1.48494 * 109.47285 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47086 * 300.00269 * 19 17 15 23 23 C 1.46738 * 109.50059 * 1.87806 * 14 12 8 24 24 C 1.53866 * 111.25520 * 63.56530 * 8 7 6 25 25 C 1.53005 * 109.47377 * 120.00053 * 2 1 3 26 26 F 1.39902 * 109.46722 * 180.02562 * 25 2 1 27 27 F 1.39894 * 109.47110 * 299.99779 * 25 2 1 28 28 F 1.39895 * 109.46697 * 60.00294 * 25 2 1 29 29 H 1.09001 * 109.47025 * 299.99730 * 1 2 3 30 30 H 1.08999 * 109.47513 * 59.99722 * 1 2 3 31 31 H 1.08996 * 109.46783 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99649 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.46667 * 60.00756 * 7 6 4 34 34 H 1.08993 * 109.47543 * 300.00420 * 7 6 4 35 35 H 1.09003 * 110.05609 * 1.96533 * 9 8 7 36 36 H 1.08991 * 110.05523 * 123.47125 * 9 8 7 37 37 H 1.08994 * 110.50236 * 92.62565 * 10 9 8 38 38 H 1.08999 * 110.49946 * 215.17436 * 10 9 8 39 39 H 1.09001 * 111.11044 * 278.68938 * 11 10 9 40 40 H 1.09000 * 111.03454 * 155.06497 * 11 10 9 41 41 H 0.97005 * 120.00046 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.03724 * 100.28748 * 23 14 12 43 43 H 1.08998 * 110.04283 * 221.74246 * 23 14 12 44 44 H 1.09006 * 110.56454 * 212.51538 * 24 8 7 45 45 H 1.08998 * 110.57395 * 335.23088 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6965 -1.1193 6 7 1.7066 -0.2499 -2.4546 7 6 2.1955 -0.9401 -3.6508 8 6 1.6857 -0.2185 -4.9000 9 6 0.1529 -0.2053 -4.9470 10 6 -0.2527 -0.9976 -6.2072 11 6 0.9776 -0.8595 -7.1688 12 6 2.1772 -0.9136 -6.1902 13 1 2.5029 -1.9367 -6.0026 14 7 3.2580 -0.0897 -6.7476 15 6 3.9336 -0.3528 -7.9094 16 1 3.6832 -1.2258 -8.4938 17 6 4.9397 0.5031 -8.3362 18 7 5.2445 1.5672 -7.6242 19 14 5.8617 0.1438 -9.9206 20 1 4.9047 0.1206 -11.0559 21 1 6.8783 1.2012 -10.1524 22 1 6.5347 -1.1756 -9.8133 23 6 3.5063 1.0555 -5.8643 24 6 2.2471 1.2115 -4.9863 25 6 2.0400 -0.7213 1.2493 26 9 3.4391 -0.7207 1.2494 27 9 1.5738 -0.0618 2.3915 28 9 1.5738 -2.0402 1.2491 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.1492 0.5389 -2.5435 33 1 1.8325 -1.9679 -3.6509 34 1 3.2854 -0.9396 -3.6507 35 1 -0.2525 -0.6860 -4.0567 36 1 -0.2100 0.8200 -5.0172 37 1 -0.4224 -2.0457 -5.9611 38 1 -1.1440 -0.5637 -6.6604 39 1 0.9568 0.0929 -7.6987 40 1 1.0190 -1.6905 -7.8729 41 1 5.9478 2.1651 -7.9224 42 1 4.3787 0.8632 -5.2398 43 1 3.6617 1.9573 -6.4565 44 1 1.5260 1.8780 -5.4595 45 1 2.5136 1.5788 -3.9953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107507209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:46 Heat of formation + Delta-G solvation = -176.027674 kcal Electronic energy + Delta-G solvation = -30557.373669 eV Core-core repulsion = 25966.855973 eV Total energy + Delta-G solvation = -4590.517696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.23166 -47.75765 -47.62422 -40.30602 -39.09966 -34.94257 -34.38580 -33.90502 -31.71741 -30.34753 -27.91422 -26.78041 -26.73664 -24.86401 -23.90792 -23.18555 -20.85303 -20.13525 -19.88824 -19.04123 -18.62630 -18.30576 -17.71230 -17.01075 -16.69923 -15.72392 -15.45233 -14.99256 -14.85080 -14.57684 -14.54365 -14.21983 -14.06696 -13.98895 -13.81411 -13.77058 -13.61510 -13.39702 -13.22094 -13.00672 -12.76564 -12.56224 -12.28372 -11.89774 -11.75296 -11.54445 -11.32148 -11.18863 -10.82409 -10.76262 -10.70661 -10.32257 -10.26408 -10.14509 -9.91338 -9.88482 -9.61437 -9.52618 -9.05200 -8.61406 -6.83839 -5.67436 -3.06657 2.35281 2.37187 2.92110 3.40014 3.44841 3.45574 3.47547 3.80061 3.94970 4.44461 4.48096 4.50482 4.65088 4.84879 4.89133 4.97418 5.03337 5.17387 5.45821 5.48266 5.52072 5.53795 5.71049 5.77149 5.78627 5.96711 6.00936 6.04454 6.11335 6.21647 6.27428 6.36104 6.41107 6.51241 6.63717 6.70763 6.81835 7.07617 7.30804 7.52145 7.65779 7.84361 7.98886 8.33808 9.22893 9.83943 10.46786 11.37944 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.002984 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.987658 B = 9380.982919 C =10189.489516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.165 4.165 3 H 0.140 0.860 4 C 0.518 3.482 5 O -0.521 6.521 6 N -0.712 5.712 7 C 0.140 3.860 8 C -0.081 4.081 9 C -0.110 4.110 10 C -0.124 4.124 11 C -0.129 4.129 12 C 0.172 3.828 13 H 0.045 0.955 14 N -0.596 5.596 15 C -0.222 4.222 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.162 3.838 24 C -0.133 4.133 25 C 0.473 3.527 26 F -0.172 7.172 27 F -0.183 7.183 28 F -0.172 7.172 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.252 0.748 42 H 0.012 0.988 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.672 0.044 15.127 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 H 0.157 0.843 4 C 0.301 3.699 5 O -0.396 6.396 6 N -0.363 5.363 7 C 0.018 3.982 8 C -0.082 4.082 9 C -0.148 4.148 10 C -0.162 4.162 11 C -0.169 4.169 12 C 0.063 3.937 13 H 0.063 0.937 14 N -0.320 5.320 15 C -0.350 4.350 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.037 3.963 24 C -0.171 4.171 25 C 0.418 3.582 26 F -0.153 7.153 27 F -0.165 7.165 28 F -0.153 7.153 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.236 0.764 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.935 -0.593 15.088 19.882 hybrid contribution 0.434 0.166 -0.638 0.789 sum -12.501 -0.427 14.450 19.112 Atomic orbital electron populations 1.21844 0.89309 1.04761 1.04838 1.22657 1.01318 1.03183 0.91567 0.84260 1.19676 0.81048 0.84917 0.84260 1.90833 1.36886 1.25553 1.86367 1.45902 1.53149 1.31998 1.05272 1.21434 0.99917 0.95275 0.81600 1.21862 0.94795 0.97286 0.94256 1.22134 0.94242 1.00392 0.98047 1.22654 0.98362 0.99281 0.95907 1.23359 0.94198 1.01841 0.97528 1.21523 0.88836 0.93964 0.89327 0.93746 1.44333 1.39028 1.24864 1.23747 1.18990 1.12026 1.07053 0.96956 0.90585 1.24767 0.99187 0.97514 0.99013 1.69861 1.33445 1.15073 1.38678 0.86197 0.79397 0.77188 0.82979 1.21218 1.21651 1.21236 1.21494 0.90431 0.93632 0.90731 1.22824 1.00542 0.93755 0.99996 1.19756 0.76068 0.77869 0.84460 1.93233 1.29130 1.96331 1.96638 1.93175 1.88605 1.80874 1.53822 1.93203 1.88284 1.37195 1.96654 0.89957 0.89650 0.90499 0.76365 0.91334 0.90571 0.92344 0.91701 0.92367 0.92497 0.90874 0.92626 0.93772 0.96954 0.88832 0.91993 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.85 37.16 0.33 -0.57 16 2 C -0.16 -1.44 2.71 -91.77 -0.25 -1.69 16 3 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.52 6.50 6.92 -10.99 -0.08 6.42 16 5 O -0.52 -8.91 14.83 5.55 0.08 -8.83 16 6 N -0.71 -8.12 4.51 -60.30 -0.27 -8.39 16 7 C 0.14 2.06 4.42 -4.04 -0.02 2.04 16 8 C -0.08 -1.23 0.53 -153.04 -0.08 -1.31 16 9 C -0.11 -1.34 5.60 -25.88 -0.14 -1.49 16 10 C -0.12 -1.63 6.89 -24.03 -0.17 -1.80 16 11 C -0.13 -2.22 6.37 -23.69 -0.15 -2.37 16 12 C 0.17 3.28 3.53 -65.88 -0.23 3.05 16 13 H 0.04 0.89 7.93 -51.93 -0.41 0.48 16 14 N -0.60 -14.29 2.99 -162.31 -0.49 -14.78 16 15 C -0.22 -5.95 9.93 -15.06 -0.15 -6.10 16 16 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 18 N -0.92 -26.33 10.14 55.49 0.56 -25.77 16 19 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.16 3.72 5.67 -3.23 -0.02 3.70 16 24 C -0.13 -2.21 5.84 -25.60 -0.15 -2.36 16 25 C 0.47 5.30 2.42 37.16 0.09 5.39 16 26 F -0.17 -2.34 16.40 2.25 0.04 -2.31 16 27 F -0.18 -1.81 16.80 2.25 0.04 -1.78 16 28 F -0.17 -2.22 15.88 2.25 0.04 -2.18 16 29 H 0.08 0.38 7.80 -51.93 -0.41 -0.02 16 30 H 0.08 0.36 7.56 -51.93 -0.39 -0.03 16 31 H 0.08 0.53 7.80 -51.93 -0.41 0.12 16 32 H 0.40 3.46 7.08 -40.82 -0.29 3.17 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 36 H 0.06 0.74 7.31 -51.93 -0.38 0.36 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 2.45 6.14 -51.93 -0.32 2.13 16 44 H 0.06 1.00 7.45 -51.93 -0.39 0.61 16 45 H 0.06 0.82 7.21 -51.93 -0.37 0.44 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -31.51 362.52 -7.35 -38.86 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.67 Total: 0.33 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.11 Total: 2.57 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.20 Total: -48.94 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.11 Total: -6.26 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.51 -7.35 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107507209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.168 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds