Wall clock time and date at job start Tue Mar 31 2020 18:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47339 * 2 1 4 4 C 1.50695 * 109.47272 * 240.00272 * 2 1 3 5 5 O 1.21286 * 120.00452 * 240.00245 * 4 2 1 6 6 N 1.34782 * 120.00175 * 59.99352 * 4 2 1 7 7 C 1.46496 * 120.00234 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47157 * 180.02562 * 7 6 4 9 9 C 1.53361 * 111.22705 * 299.53329 * 8 7 6 10 10 C 1.54279 * 106.46221 * 242.71952 * 9 8 7 11 11 C 1.56756 * 104.44897 * 334.12183 * 10 9 8 12 12 C 1.54570 * 111.31671 * 180.02562 * 8 7 6 13 13 H 1.08997 * 111.92755 * 18.72353 * 12 8 7 14 14 N 1.46889 * 107.36629 * 255.62608 * 12 8 7 15 15 C 1.36945 * 125.24865 * 181.61837 * 14 12 8 16 16 H 1.07999 * 120.00077 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99637 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99854 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46819 * 59.99973 * 19 17 15 21 21 H 1.48494 * 109.47285 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47086 * 300.00269 * 19 17 15 23 23 C 1.46738 * 109.50059 * 1.87806 * 14 12 8 24 24 C 1.53866 * 111.25520 * 63.56530 * 8 7 6 25 25 C 1.53005 * 109.47377 * 120.00053 * 2 1 3 26 26 F 1.39902 * 109.46722 * 180.02562 * 25 2 1 27 27 F 1.39894 * 109.47110 * 299.99779 * 25 2 1 28 28 F 1.39895 * 109.46697 * 60.00294 * 25 2 1 29 29 H 1.09001 * 109.47025 * 299.99730 * 1 2 3 30 30 H 1.08999 * 109.47513 * 59.99722 * 1 2 3 31 31 H 1.08996 * 109.46783 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99649 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.46667 * 60.00756 * 7 6 4 34 34 H 1.08993 * 109.47543 * 300.00420 * 7 6 4 35 35 H 1.09003 * 110.05609 * 1.96533 * 9 8 7 36 36 H 1.08991 * 110.05523 * 123.47125 * 9 8 7 37 37 H 1.08994 * 110.50236 * 92.62565 * 10 9 8 38 38 H 1.08999 * 110.49946 * 215.17436 * 10 9 8 39 39 H 1.09001 * 111.11044 * 278.68938 * 11 10 9 40 40 H 1.09000 * 111.03454 * 155.06497 * 11 10 9 41 41 H 0.97005 * 120.00046 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.03724 * 100.28748 * 23 14 12 43 43 H 1.08998 * 110.04283 * 221.74246 * 23 14 12 44 44 H 1.09006 * 110.56454 * 212.51538 * 24 8 7 45 45 H 1.08998 * 110.57395 * 335.23088 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6965 -1.1193 6 7 1.7066 -0.2499 -2.4546 7 6 2.1955 -0.9401 -3.6508 8 6 1.6857 -0.2185 -4.9000 9 6 0.1529 -0.2053 -4.9470 10 6 -0.2527 -0.9976 -6.2072 11 6 0.9776 -0.8595 -7.1688 12 6 2.1772 -0.9136 -6.1902 13 1 2.5029 -1.9367 -6.0026 14 7 3.2580 -0.0897 -6.7476 15 6 3.9336 -0.3528 -7.9094 16 1 3.6832 -1.2258 -8.4938 17 6 4.9397 0.5031 -8.3362 18 7 5.2445 1.5672 -7.6242 19 14 5.8617 0.1438 -9.9206 20 1 4.9047 0.1206 -11.0559 21 1 6.8783 1.2012 -10.1524 22 1 6.5347 -1.1756 -9.8133 23 6 3.5063 1.0555 -5.8643 24 6 2.2471 1.2115 -4.9863 25 6 2.0400 -0.7213 1.2493 26 9 3.4391 -0.7207 1.2494 27 9 1.5738 -0.0618 2.3915 28 9 1.5738 -2.0402 1.2491 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.1492 0.5389 -2.5435 33 1 1.8325 -1.9679 -3.6509 34 1 3.2854 -0.9396 -3.6507 35 1 -0.2525 -0.6860 -4.0567 36 1 -0.2100 0.8200 -5.0172 37 1 -0.4224 -2.0457 -5.9611 38 1 -1.1440 -0.5637 -6.6604 39 1 0.9568 0.0929 -7.6987 40 1 1.0190 -1.6905 -7.8729 41 1 5.9478 2.1651 -7.9224 42 1 4.3787 0.8632 -5.2398 43 1 3.6617 1.9573 -6.4565 44 1 1.5260 1.8780 -5.4595 45 1 2.5136 1.5788 -3.9953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107507209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:45 Heat of formation + Delta-G solvation = -195.577238 kcal Electronic energy + Delta-G solvation = -30558.221402 eV Core-core repulsion = 25966.855973 eV Total energy + Delta-G solvation = -4591.365429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.11257 -48.61249 -48.57189 -41.47745 -40.35969 -36.38304 -35.52203 -34.93305 -33.40806 -31.94854 -29.26218 -28.35352 -27.38787 -26.06371 -25.70269 -24.15285 -22.13424 -21.56320 -21.13430 -20.02013 -19.57512 -19.42674 -18.96036 -18.45875 -17.78462 -16.86862 -16.69466 -16.55268 -16.14048 -15.79359 -15.52585 -15.42920 -15.13378 -14.98860 -14.88940 -14.74460 -14.68762 -14.55002 -14.35855 -14.24163 -13.96723 -13.45399 -13.42439 -13.20668 -12.95764 -12.89050 -12.81731 -12.58797 -12.44513 -12.36162 -12.04828 -11.85653 -11.60649 -11.54719 -11.38521 -11.33688 -11.06102 -10.98699 -10.66486 -10.17118 -8.81611 -7.76411 -5.16542 1.41141 1.45054 1.47492 1.51847 1.53628 2.00599 2.50549 2.66917 3.02067 3.10369 3.34030 3.50058 3.66105 3.71110 3.72430 3.84549 3.98975 4.03169 4.28990 4.41074 4.44823 4.52731 4.61515 4.68605 4.69799 4.72772 4.78838 4.88821 4.95858 5.05650 5.16218 5.17880 5.18839 5.28956 5.35561 5.42723 5.47747 5.54908 5.63746 5.73668 5.89146 6.32943 6.38312 7.07222 7.16197 7.86516 8.46824 9.26656 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.002984 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.987658 B = 9380.982919 C =10189.489516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 H 0.173 0.827 4 C 0.515 3.485 5 O -0.573 6.573 6 N -0.695 5.695 7 C 0.152 3.848 8 C -0.066 4.066 9 C -0.101 4.101 10 C -0.113 4.113 11 C -0.126 4.126 12 C 0.155 3.845 13 H 0.030 0.970 14 N -0.615 5.615 15 C -0.230 4.230 16 H 0.076 0.924 17 C -0.067 4.067 18 N -0.949 5.949 19 Si 0.972 3.028 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.283 1.283 23 C 0.165 3.835 24 C -0.116 4.116 25 C 0.464 3.536 26 F -0.192 7.192 27 F -0.174 7.174 28 F -0.186 7.186 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.420 0.580 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.244 0.756 42 H -0.029 1.029 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.055 0.725 16.135 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 H 0.190 0.810 4 C 0.301 3.699 5 O -0.452 6.452 6 N -0.348 5.348 7 C 0.028 3.972 8 C -0.067 4.067 9 C -0.139 4.139 10 C -0.150 4.150 11 C -0.166 4.166 12 C 0.048 3.952 13 H 0.048 0.952 14 N -0.339 5.339 15 C -0.360 4.360 16 H 0.094 0.906 17 C -0.259 4.259 18 N -0.599 5.599 19 Si 0.801 3.199 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.210 1.210 23 C 0.040 3.960 24 C -0.154 4.154 25 C 0.410 3.590 26 F -0.173 7.173 27 F -0.156 7.156 28 F -0.167 7.167 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.259 0.741 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.054 0.946 42 H -0.011 1.011 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.382 0.097 16.105 22.973 hybrid contribution 1.537 -0.115 -0.931 1.801 sum -14.845 -0.018 15.173 21.228 Atomic orbital electron populations 1.21963 0.86516 1.04895 1.07158 1.22723 1.03333 1.03517 0.87826 0.80974 1.20327 0.79955 0.84275 0.85354 1.90821 1.39182 1.28056 1.87144 1.45642 1.52897 1.32236 1.04010 1.21073 0.97542 0.95776 0.82847 1.21730 0.97361 0.95311 0.92256 1.22136 0.90802 1.02049 0.98873 1.22615 0.96824 1.00633 0.94973 1.23189 0.95505 1.00238 0.97650 1.21840 0.88285 0.93026 0.92056 0.95195 1.44607 1.39965 1.26063 1.23253 1.19323 1.12018 1.06673 0.97936 0.90607 1.25533 1.00506 0.97782 1.02087 1.70118 1.33802 1.15905 1.40039 0.85241 0.78112 0.76657 0.79883 1.20187 1.22125 1.20988 1.21260 0.92386 0.91874 0.90483 1.22666 0.97559 0.95257 0.99899 1.20213 0.75250 0.77688 0.85852 1.93194 1.30941 1.96397 1.96804 1.93189 1.88331 1.80503 1.53548 1.93174 1.88306 1.38457 1.96792 0.88079 0.86914 0.91485 0.74104 0.91312 0.94697 0.89284 0.89517 0.91095 0.90245 0.93199 0.93415 0.94636 1.01066 0.92447 0.90378 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.85 71.98 0.64 -0.47 16 2 C -0.15 -2.19 2.71 -11.54 -0.03 -2.22 16 3 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.52 11.94 6.92 87.65 0.61 12.54 16 5 O -0.57 -19.59 14.83 -3.05 -0.05 -19.63 16 6 N -0.70 -13.83 4.51 -463.06 -2.09 -15.92 16 7 C 0.15 4.29 4.42 86.38 0.38 4.67 16 8 C -0.07 -1.86 0.53 -51.23 -0.03 -1.89 16 9 C -0.10 -1.97 5.60 31.15 0.17 -1.79 16 10 C -0.11 -2.51 6.89 32.34 0.22 -2.28 16 11 C -0.13 -4.21 6.37 32.56 0.21 -4.00 16 12 C 0.15 5.94 3.53 46.11 0.16 6.11 16 13 H 0.03 1.24 7.93 -2.39 -0.02 1.22 16 14 N -0.61 -30.60 2.99 -667.44 -2.00 -32.59 16 15 C -0.23 -12.80 9.93 84.03 0.83 -11.97 16 16 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 17 C -0.07 -3.79 5.48 84.86 0.47 -3.33 16 18 N -0.95 -56.73 10.14 21.65 0.22 -56.51 16 19 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 C 0.17 7.90 5.67 86.77 0.49 8.39 16 24 C -0.12 -3.68 5.84 31.33 0.18 -3.50 16 25 C 0.46 9.69 2.42 71.98 0.17 9.87 16 26 F -0.19 -5.17 16.40 44.97 0.74 -4.43 16 27 F -0.17 -3.07 16.80 44.97 0.76 -2.31 16 28 F -0.19 -4.65 15.88 44.97 0.71 -3.94 16 29 H 0.10 0.45 7.80 -2.39 -0.02 0.43 16 30 H 0.11 0.26 7.56 -2.39 -0.02 0.24 16 31 H 0.07 0.68 7.80 -2.39 -0.02 0.66 16 32 H 0.42 5.15 7.08 -92.71 -0.66 4.50 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.29 7.45 -2.39 -0.02 1.27 16 36 H 0.09 1.42 7.31 -2.39 -0.02 1.40 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.89 8.06 -2.39 -0.02 1.87 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.24 14.31 8.31 -92.70 -0.77 13.54 16 42 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 43 H 0.06 3.16 6.14 -2.39 -0.01 3.14 16 44 H 0.08 2.29 7.45 -2.38 -0.02 2.27 16 45 H 0.08 2.17 7.21 -2.39 -0.02 2.15 16 Total: -1.00 -75.68 362.52 5.16 -70.52 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.36 Total: 6.48 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 4.48 Total: 10.13 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.87 Total: -105.02 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 9 Polarization: -12.89 SS G_CDS: 2.21 Total: -10.69 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -75.68 5.16 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107507209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.060 kcal (2) G-P(sol) polarization free energy of solvation -75.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds