Wall clock time and date at job start Tue Mar 31 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.53000 * 109.47013 * 119.99880 * 2 1 3 5 5 O 1.42900 * 109.47646 * 56.22622 * 4 2 1 6 6 N 1.46502 * 109.47170 * 239.99632 * 2 1 3 7 7 C 1.46500 * 120.00069 * 306.03540 * 6 2 1 8 8 C 1.34772 * 119.99900 * 126.03541 * 6 2 1 9 9 O 1.21342 * 120.00160 * 4.47820 * 8 6 2 10 10 C 1.49456 * 119.99817 * 184.47841 * 8 6 2 11 11 O 1.21343 * 120.00028 * 5.33429 * 10 8 6 12 12 N 1.34776 * 119.99869 * 185.34277 * 10 8 6 13 13 C 1.46495 * 120.00090 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47249 * 324.99812 * 13 12 10 15 15 C 1.53001 * 109.47171 * 204.99796 * 13 12 10 16 16 C 1.50692 * 109.47331 * 65.00013 * 15 13 12 17 17 H 1.08002 * 119.99983 * 0.02562 * 16 15 13 18 18 C 1.37880 * 120.00213 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99583 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47042 * 60.00200 * 20 18 16 22 22 H 1.48506 * 109.47235 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47280 * 300.00151 * 20 18 16 24 24 C 1.50695 * 109.47314 * 84.99580 * 13 12 10 25 25 C 1.38237 * 120.00001 * 39.72537 * 24 13 12 26 26 C 1.38234 * 120.00254 * 179.78473 * 25 24 13 27 27 C 1.38233 * 119.99856 * 0.45075 * 26 25 24 28 28 C 1.38237 * 120.00348 * 359.80468 * 27 26 25 29 29 C 1.38235 * 119.99577 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47084 * 300.00132 * 1 2 3 32 32 H 1.08994 * 109.47029 * 60.00046 * 1 2 3 33 33 H 1.09000 * 109.47217 * 176.23216 * 4 2 1 34 34 H 1.09003 * 109.46825 * 296.22176 * 4 2 1 35 35 H 0.96694 * 114.00466 * 180.02562 * 5 4 2 36 36 H 1.09006 * 109.47048 * 358.33203 * 7 6 2 37 37 H 1.09003 * 109.47379 * 118.33225 * 7 6 2 38 38 H 1.09004 * 109.47494 * 238.33578 * 7 6 2 39 39 H 0.97001 * 119.99705 * 359.97438 * 12 10 8 40 40 H 1.09001 * 109.46904 * 184.99871 * 15 13 12 41 41 H 1.08991 * 109.47254 * 304.99322 * 15 13 12 42 42 H 0.97006 * 119.99476 * 179.97438 * 19 18 16 43 43 H 1.08004 * 119.99494 * 0.02562 * 25 24 13 44 44 H 1.07997 * 120.00070 * 180.27533 * 26 25 24 45 45 H 1.08005 * 120.00343 * 179.82780 * 27 26 25 46 46 H 1.07994 * 120.00313 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.00097 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4927 -2.0405 1.2946 6 7 2.0184 -0.6907 -1.1961 7 6 1.5589 -2.0489 -1.4966 8 6 2.8904 -0.0766 -2.0201 9 8 3.3336 1.0151 -1.7298 10 6 3.3114 -0.7401 -3.2913 11 8 2.7966 -1.7856 -3.6294 12 7 4.2632 -0.1774 -4.0620 13 6 4.6764 -0.8281 -5.3078 14 1 4.6441 -1.9102 -5.1806 15 6 6.1021 -0.3982 -5.6592 16 6 7.0540 -0.9083 -4.6083 17 1 6.6797 -1.4822 -3.7734 18 6 8.4031 -0.6434 -4.7131 19 7 8.8589 0.0549 -5.7300 20 14 9.5830 -1.2752 -3.4100 21 1 9.5117 -2.7574 -3.3545 22 1 10.9668 -0.8580 -3.7511 23 1 9.2083 -0.7118 -2.0880 24 6 3.7418 -0.4249 -6.4191 25 6 3.2863 0.8777 -6.5007 26 6 2.4325 1.2486 -7.5226 27 6 2.0269 0.3148 -8.4576 28 6 2.4782 -0.9891 -8.3731 29 6 3.3356 -1.3589 -7.3538 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 3.1279 -0.7801 1.2162 34 1 1.7330 -0.1697 2.1379 35 1 1.7737 -2.5568 2.0624 36 1 0.8863 -2.3876 -0.7085 37 1 1.0313 -2.0514 -2.4505 38 1 2.4171 -2.7185 -1.5544 39 1 4.6746 0.6584 -3.7918 40 1 6.3772 -0.8111 -6.6298 41 1 6.1541 0.6897 -5.6993 42 1 9.8080 0.2416 -5.8035 43 1 3.6005 1.6065 -5.7681 44 1 2.0802 2.2674 -7.5889 45 1 1.3576 0.6039 -9.2545 46 1 2.1616 -1.7186 -9.1038 47 1 3.6885 -2.3775 -7.2879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117567396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:05 Heat of formation + Delta-G solvation = -91.151438 kcal Electronic energy + Delta-G solvation = -29490.804608 eV Core-core repulsion = 25445.824162 eV Total energy + Delta-G solvation = -4044.980446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60621 -39.24173 -38.20122 -37.39820 -35.74127 -34.98605 -32.74078 -31.64883 -31.12399 -30.46549 -28.84954 -27.15423 -26.34441 -25.45913 -24.06804 -22.31485 -21.96949 -21.03595 -19.81653 -19.36702 -18.02974 -17.36917 -16.83820 -16.58769 -16.15813 -15.93683 -15.65352 -15.15192 -14.86650 -14.56493 -14.45150 -14.35532 -13.78955 -13.56490 -13.32739 -13.02112 -12.98905 -12.85793 -12.65223 -12.53206 -12.41979 -12.14675 -12.10480 -11.59234 -11.48840 -11.24017 -11.14126 -11.05593 -10.93706 -10.71776 -10.64121 -10.45069 -10.28846 -9.80558 -9.35111 -9.05552 -8.73399 -8.56691 -8.49664 -8.44416 -8.20930 -6.08511 -4.12205 1.73677 1.78823 1.79908 2.59784 3.30160 3.34623 3.37548 3.57199 3.81501 4.01265 4.21303 4.40637 4.60714 4.82267 4.87837 5.05989 5.19684 5.25099 5.26699 5.28575 5.29148 5.35741 5.42024 5.52264 5.65011 5.73984 5.89072 5.89267 5.91802 6.01259 6.10258 6.19628 6.32339 6.40475 6.44763 6.52803 6.75903 6.83328 6.84373 7.05716 7.15788 7.35089 7.38647 7.47425 7.53941 7.76375 7.87106 8.10086 8.24219 8.50107 8.92468 9.52856 11.01995 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007766 B = 0.004529 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.537497 B = 6181.099111 C = 8917.292488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 H 0.112 0.888 4 C 0.067 3.933 5 O -0.566 6.566 6 N -0.583 5.583 7 C 0.092 3.908 8 C 0.506 3.494 9 O -0.526 6.526 10 C 0.503 3.497 11 O -0.526 6.526 12 N -0.667 5.667 13 C 0.183 3.817 14 H 0.091 0.909 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.074 4.074 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.123 4.123 29 C -0.106 4.106 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.377 0.623 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.412 0.588 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.263 0.737 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.890 -0.767 7.974 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.130 0.870 4 C -0.012 4.012 5 O -0.372 6.372 6 N -0.317 5.317 7 C -0.050 4.050 8 C 0.289 3.711 9 O -0.402 6.402 10 C 0.283 3.717 11 O -0.403 6.403 12 N -0.317 5.317 13 C 0.080 3.920 14 H 0.109 0.891 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.075 4.075 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.224 0.776 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.249 0.751 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.107 -0.660 7.239 18.587 hybrid contribution 1.303 -0.064 1.324 1.859 sum -15.804 -0.724 8.563 17.989 Atomic orbital electron populations 1.22050 0.93844 1.03348 1.02191 1.21284 0.95219 0.97297 0.83041 0.87014 1.22568 0.97512 0.83952 0.97159 1.86479 1.74031 1.26347 1.50300 1.47709 1.43533 1.17205 1.23234 1.22007 1.00847 0.80683 1.01475 1.20561 0.79644 0.85771 0.85135 1.90722 1.54106 1.20757 1.74634 1.19867 0.81528 0.85479 0.84821 1.90706 1.54358 1.22320 1.72938 1.45855 1.36796 1.26856 1.22196 1.20402 0.94864 0.97913 0.78846 0.89078 1.19408 0.86305 0.97635 0.98013 1.21067 0.91760 1.34691 1.08585 0.92515 1.24966 0.98357 0.95018 0.95632 1.69944 1.14458 1.38893 1.29644 0.86653 0.79973 0.79346 0.82041 1.20198 1.21244 1.20224 1.20485 0.96526 0.93667 0.96854 1.20962 0.97485 0.95902 0.98239 1.21049 0.98656 0.99094 0.95410 1.21012 1.01048 0.93764 0.99319 1.21039 0.98427 0.96213 0.98424 1.21003 0.97350 0.99368 0.94758 0.91013 0.91480 0.92228 0.93034 0.92509 0.77564 0.89745 0.91220 0.91829 0.75105 0.94400 0.95502 0.92767 0.86440 0.86657 0.86790 0.86540 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.91 37.16 0.33 -1.11 16 2 C 0.13 1.51 3.13 -67.93 -0.21 1.29 16 3 H 0.11 1.33 6.95 -51.93 -0.36 0.97 16 4 C 0.07 0.61 6.84 37.16 0.25 0.86 16 5 O -0.57 -4.78 10.23 -35.23 -0.36 -5.14 16 6 N -0.58 -8.18 2.76 -174.43 -0.48 -8.66 16 7 C 0.09 1.21 7.85 59.85 0.47 1.68 16 8 C 0.51 8.64 7.73 -11.58 -0.09 8.55 16 9 O -0.53 -9.76 15.84 5.50 0.09 -9.68 16 10 C 0.50 9.38 7.74 -11.58 -0.09 9.29 16 11 O -0.53 -10.25 12.98 5.50 0.07 -10.18 16 12 N -0.67 -12.90 4.01 -55.37 -0.22 -13.12 16 13 C 0.18 3.75 2.12 -69.09 -0.15 3.60 16 14 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 15 C 0.02 0.57 4.50 -27.89 -0.13 0.45 16 16 C -0.52 -13.99 8.84 -34.44 -0.30 -14.29 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.07 -1.38 4.91 -104.62 -0.51 -1.89 16 25 C -0.11 -1.86 9.33 -39.58 -0.37 -2.23 16 26 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 27 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 28 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 29 C -0.11 -1.81 9.67 -39.58 -0.38 -2.19 16 30 H 0.07 0.68 6.27 -51.93 -0.33 0.35 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.38 1.68 9.12 45.56 0.42 2.10 16 36 H 0.08 0.96 4.80 -51.93 -0.25 0.71 16 37 H 0.07 0.99 6.94 -51.93 -0.36 0.63 16 38 H 0.06 0.92 7.55 -51.93 -0.39 0.53 16 39 H 0.41 8.00 8.09 -40.82 -0.33 7.67 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 1.98 7.71 -52.48 -0.40 1.58 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 47 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -31.84 389.11 -7.96 -39.80 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.16 Total: 10.96 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.47 Total: -1.14 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.03 Total: -46.79 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.20 Total: -25.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.84 -7.96 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117567396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.353 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds