Wall clock time and date at job start Tue Mar 31 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.53000 * 109.47013 * 119.99880 * 2 1 3 5 5 O 1.42900 * 109.47646 * 56.22622 * 4 2 1 6 6 N 1.46502 * 109.47170 * 239.99632 * 2 1 3 7 7 C 1.46500 * 120.00069 * 306.03540 * 6 2 1 8 8 C 1.34772 * 119.99900 * 126.03541 * 6 2 1 9 9 O 1.21342 * 120.00160 * 4.47820 * 8 6 2 10 10 C 1.49456 * 119.99817 * 184.47841 * 8 6 2 11 11 O 1.21343 * 120.00028 * 5.33429 * 10 8 6 12 12 N 1.34776 * 119.99869 * 185.34277 * 10 8 6 13 13 C 1.46495 * 120.00090 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47249 * 324.99812 * 13 12 10 15 15 C 1.53001 * 109.47171 * 204.99796 * 13 12 10 16 16 C 1.50692 * 109.47331 * 65.00013 * 15 13 12 17 17 H 1.08002 * 119.99983 * 0.02562 * 16 15 13 18 18 C 1.37880 * 120.00213 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99583 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47042 * 60.00200 * 20 18 16 22 22 H 1.48506 * 109.47235 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47280 * 300.00151 * 20 18 16 24 24 C 1.50695 * 109.47314 * 84.99580 * 13 12 10 25 25 C 1.38237 * 120.00001 * 39.72537 * 24 13 12 26 26 C 1.38234 * 120.00254 * 179.78473 * 25 24 13 27 27 C 1.38233 * 119.99856 * 0.45075 * 26 25 24 28 28 C 1.38237 * 120.00348 * 359.80468 * 27 26 25 29 29 C 1.38235 * 119.99577 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47084 * 300.00132 * 1 2 3 32 32 H 1.08994 * 109.47029 * 60.00046 * 1 2 3 33 33 H 1.09000 * 109.47217 * 176.23216 * 4 2 1 34 34 H 1.09003 * 109.46825 * 296.22176 * 4 2 1 35 35 H 0.96694 * 114.00466 * 180.02562 * 5 4 2 36 36 H 1.09006 * 109.47048 * 358.33203 * 7 6 2 37 37 H 1.09003 * 109.47379 * 118.33225 * 7 6 2 38 38 H 1.09004 * 109.47494 * 238.33578 * 7 6 2 39 39 H 0.97001 * 119.99705 * 359.97438 * 12 10 8 40 40 H 1.09001 * 109.46904 * 184.99871 * 15 13 12 41 41 H 1.08991 * 109.47254 * 304.99322 * 15 13 12 42 42 H 0.97006 * 119.99476 * 179.97438 * 19 18 16 43 43 H 1.08004 * 119.99494 * 0.02562 * 25 24 13 44 44 H 1.07997 * 120.00070 * 180.27533 * 26 25 24 45 45 H 1.08005 * 120.00343 * 179.82780 * 27 26 25 46 46 H 1.07994 * 120.00313 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.00097 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4927 -2.0405 1.2946 6 7 2.0184 -0.6907 -1.1961 7 6 1.5589 -2.0489 -1.4966 8 6 2.8904 -0.0766 -2.0201 9 8 3.3336 1.0151 -1.7298 10 6 3.3114 -0.7401 -3.2913 11 8 2.7966 -1.7856 -3.6294 12 7 4.2632 -0.1774 -4.0620 13 6 4.6764 -0.8281 -5.3078 14 1 4.6441 -1.9102 -5.1806 15 6 6.1021 -0.3982 -5.6592 16 6 7.0540 -0.9083 -4.6083 17 1 6.6797 -1.4822 -3.7734 18 6 8.4031 -0.6434 -4.7131 19 7 8.8589 0.0549 -5.7300 20 14 9.5830 -1.2752 -3.4100 21 1 9.5117 -2.7574 -3.3545 22 1 10.9668 -0.8580 -3.7511 23 1 9.2083 -0.7118 -2.0880 24 6 3.7418 -0.4249 -6.4191 25 6 3.2863 0.8777 -6.5007 26 6 2.4325 1.2486 -7.5226 27 6 2.0269 0.3148 -8.4576 28 6 2.4782 -0.9891 -8.3731 29 6 3.3356 -1.3589 -7.3538 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 3.1279 -0.7801 1.2162 34 1 1.7330 -0.1697 2.1379 35 1 1.7737 -2.5568 2.0624 36 1 0.8863 -2.3876 -0.7085 37 1 1.0313 -2.0514 -2.4505 38 1 2.4171 -2.7185 -1.5544 39 1 4.6746 0.6584 -3.7918 40 1 6.3772 -0.8111 -6.6298 41 1 6.1541 0.6897 -5.6993 42 1 9.8080 0.2416 -5.8035 43 1 3.6005 1.6065 -5.7681 44 1 2.0802 2.2674 -7.5889 45 1 1.3576 0.6039 -9.2545 46 1 2.1616 -1.7186 -9.1038 47 1 3.6885 -2.3775 -7.2879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117567396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:05 Heat of formation + Delta-G solvation = -112.677604 kcal Electronic energy + Delta-G solvation = -29491.738053 eV Core-core repulsion = 25445.824162 eV Total energy + Delta-G solvation = -4045.913891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97134 -40.55112 -39.46062 -38.46453 -37.10124 -36.19651 -34.74737 -32.60216 -32.59251 -31.71082 -30.59215 -28.18169 -27.41400 -26.94913 -25.53180 -23.82940 -23.38395 -22.24280 -21.28874 -20.55092 -19.11154 -18.65643 -18.48758 -17.89066 -17.59039 -17.23256 -16.91257 -16.61567 -16.22770 -16.15899 -15.54430 -15.51843 -15.04513 -14.77727 -14.62127 -14.43000 -14.20929 -14.06022 -14.01017 -13.79006 -13.69436 -13.51886 -13.32029 -13.07614 -12.94627 -12.65973 -12.55607 -12.45975 -12.29414 -12.17919 -12.02042 -11.88982 -11.63885 -11.38852 -10.97792 -10.63241 -10.43862 -10.17717 -9.81935 -9.77065 -9.55128 -8.22242 -6.32610 0.35325 0.47862 0.54483 1.31947 1.38273 1.39599 1.47563 2.13675 2.38174 2.49067 2.94760 3.11733 3.34033 3.38490 3.83349 3.93265 4.00627 4.02315 4.19501 4.29643 4.31207 4.33441 4.37782 4.56490 4.60187 4.60734 4.69356 4.72063 4.76075 4.87428 4.95625 5.03104 5.10893 5.17467 5.19618 5.29142 5.36112 5.38399 5.52445 5.59687 5.63068 5.74497 5.78761 5.95207 6.12637 6.17529 6.29989 6.68045 6.78910 6.90136 6.98856 7.36059 8.88375 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007766 B = 0.004529 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.537497 B = 6181.099111 C = 8917.292488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.123 3.877 3 H 0.103 0.897 4 C 0.074 3.926 5 O -0.577 6.577 6 N -0.572 5.572 7 C 0.099 3.901 8 C 0.504 3.496 9 O -0.547 6.547 10 C 0.500 3.500 11 O -0.537 6.537 12 N -0.669 5.669 13 C 0.200 3.800 14 H 0.074 0.926 15 C 0.037 3.963 16 C -0.533 4.533 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.272 1.272 24 C -0.100 4.100 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.126 4.126 28 C -0.121 4.121 29 C -0.126 4.126 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.088 0.912 35 H 0.396 0.604 36 H 0.109 0.891 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.410 0.590 40 H 0.013 0.987 41 H 0.008 0.992 42 H 0.265 0.735 43 H 0.111 0.889 44 H 0.143 0.857 45 H 0.153 0.847 46 H 0.148 0.852 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.857 -0.967 8.842 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 H 0.121 0.879 4 C -0.005 4.005 5 O -0.385 6.385 6 N -0.305 5.305 7 C -0.043 4.043 8 C 0.286 3.714 9 O -0.426 6.426 10 C 0.281 3.719 11 O -0.415 6.415 12 N -0.319 5.319 13 C 0.095 3.905 14 H 0.092 0.908 15 C -0.001 4.001 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.780 3.220 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.197 1.197 24 C -0.101 4.101 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.138 4.138 29 C -0.144 4.144 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.247 0.753 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.246 0.754 40 H 0.031 0.969 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.105 -0.891 8.146 20.788 hybrid contribution 1.818 -0.028 1.037 2.093 sum -17.287 -0.919 9.183 19.596 Atomic orbital electron populations 1.22000 0.91885 1.03619 1.03051 1.21638 0.96725 0.96960 0.82579 0.87904 1.22435 0.96445 0.84607 0.96980 1.86400 1.74032 1.26245 1.51863 1.47871 1.41961 1.17300 1.23319 1.21963 1.00429 0.79962 1.01927 1.20247 0.80531 0.85630 0.84977 1.90708 1.55317 1.21503 1.75038 1.20225 0.81037 0.85307 0.85312 1.90689 1.54637 1.22789 1.73397 1.45791 1.37235 1.26724 1.22172 1.19942 0.93468 0.96721 0.80324 0.90835 1.19145 0.88631 0.96032 0.96243 1.21354 0.92546 1.34373 1.08848 0.92931 1.25766 1.00077 0.95215 0.97619 1.70058 1.14863 1.40099 1.31359 0.85657 0.77909 0.78966 0.79465 1.19511 1.20594 1.19714 1.20357 0.97703 0.94943 0.97101 1.21053 0.98655 0.95293 0.99380 1.21405 0.97577 1.00804 0.94536 1.21485 1.00394 0.93033 0.99442 1.21419 0.97080 0.97448 0.97892 1.21184 0.98465 0.99255 0.95505 0.90924 0.88934 0.93087 0.94665 0.89405 0.75311 0.87328 0.92195 0.93301 0.75370 0.96871 0.97352 0.92645 0.87120 0.83925 0.82964 0.83403 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.91 71.98 0.64 -1.74 16 2 C 0.12 2.58 3.13 44.99 0.14 2.72 16 3 H 0.10 2.38 6.95 -2.39 -0.02 2.36 16 4 C 0.07 1.19 6.84 71.98 0.49 1.68 16 5 O -0.58 -8.27 10.23 -148.98 -1.52 -9.79 16 6 N -0.57 -15.88 2.76 -824.15 -2.28 -18.15 16 7 C 0.10 2.56 7.85 127.77 1.00 3.56 16 8 C 0.50 17.59 7.73 87.27 0.67 18.26 16 9 O -0.55 -20.83 15.84 -3.22 -0.05 -20.88 16 10 C 0.50 19.38 7.74 87.27 0.68 20.06 16 11 O -0.54 -21.63 12.98 -3.23 -0.04 -21.67 16 12 N -0.67 -27.34 4.01 -447.45 -1.80 -29.13 16 13 C 0.20 8.65 2.12 44.24 0.09 8.74 16 14 H 0.07 3.39 7.44 -2.39 -0.02 3.37 16 15 C 0.04 1.89 4.50 29.85 0.13 2.03 16 16 C -0.53 -29.62 8.84 25.60 0.23 -29.40 16 17 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 18 C 0.01 0.69 5.46 84.66 0.46 1.15 16 19 N -0.92 -54.84 13.29 21.45 0.28 -54.55 16 20 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 C -0.10 -3.85 4.91 -19.87 -0.10 -3.95 16 25 C -0.13 -4.42 9.33 22.27 0.21 -4.21 16 26 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 27 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16 28 C -0.12 -3.33 10.05 22.27 0.22 -3.11 16 29 C -0.13 -4.33 9.67 22.27 0.22 -4.11 16 30 H 0.07 1.18 6.27 -2.39 -0.01 1.16 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.03 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.40 2.44 9.12 -74.06 -0.68 1.76 16 36 H 0.11 2.29 4.80 -2.38 -0.01 2.27 16 37 H 0.06 1.69 6.94 -2.39 -0.02 1.67 16 38 H 0.05 1.42 7.55 -2.38 -0.02 1.40 16 39 H 0.41 16.95 8.09 -92.71 -0.75 16.20 16 40 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 43 H 0.11 3.92 7.71 -2.91 -0.02 3.90 16 44 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 45 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 46 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 47 H 0.12 4.01 8.04 -2.91 -0.02 3.99 16 Total: -1.00 -70.63 389.11 1.74 -68.90 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.43 Total: 33.57 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.54 Total: 5.36 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -3.79 Total: -101.84 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -1.62 Total: -52.34 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.63 1.74 -68.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117567396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.779 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds