Wall clock time and date at job start Tue Mar 31 2020 17:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47474 * 2 1 4 4 O 1.42897 * 109.47248 * 239.99391 * 2 1 3 5 5 C 1.53004 * 109.46784 * 119.99460 * 2 1 3 6 6 N 1.46505 * 109.47100 * 184.99712 * 5 2 1 7 7 C 1.46500 * 119.99909 * 270.00346 * 6 5 2 8 8 C 1.34774 * 119.99775 * 89.99803 * 6 5 2 9 9 O 1.21355 * 119.99973 * 3.63663 * 8 6 5 10 10 C 1.49450 * 120.00227 * 183.63169 * 8 6 5 11 11 O 1.21357 * 119.99578 * 354.17238 * 10 8 6 12 12 N 1.34770 * 120.00288 * 173.90007 * 10 8 6 13 13 C 1.46501 * 120.00280 * 180.27694 * 12 10 8 14 14 H 1.09001 * 109.47009 * 34.99661 * 13 12 10 15 15 C 1.52995 * 109.47529 * 154.99649 * 13 12 10 16 16 C 1.50703 * 109.47024 * 295.00205 * 15 13 12 17 17 H 1.07994 * 119.99899 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99643 * 179.97438 * 16 15 13 19 19 N 1.31517 * 120.00365 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99885 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47083 * 59.99503 * 20 18 16 22 22 H 1.48493 * 109.47004 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46927 * 299.99765 * 20 18 16 24 24 C 1.50704 * 109.47231 * 275.00104 * 13 12 10 25 25 C 1.38243 * 119.99313 * 319.72521 * 24 13 12 26 26 C 1.38239 * 119.99221 * 179.81168 * 25 24 13 27 27 C 1.38237 * 120.00304 * 0.39643 * 26 25 24 28 28 C 1.38238 * 119.99762 * 359.85416 * 27 26 25 29 29 C 1.38227 * 120.00335 * 139.99735 * 24 13 12 30 30 H 1.08995 * 109.47249 * 300.00859 * 1 2 3 31 31 H 1.09006 * 109.46742 * 60.00132 * 1 2 3 32 32 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 33 33 H 0.96705 * 114.00036 * 300.00299 * 4 2 1 34 34 H 1.09000 * 109.47147 * 64.99892 * 5 2 1 35 35 H 1.08999 * 109.47412 * 304.99774 * 5 2 1 36 36 H 1.09007 * 109.46863 * 263.99012 * 7 6 5 37 37 H 1.08994 * 109.47353 * 23.99240 * 7 6 5 38 38 H 1.09003 * 109.46957 * 143.99572 * 7 6 5 39 39 H 0.96998 * 120.00206 * 0.27453 * 12 10 8 40 40 H 1.09007 * 109.47002 * 55.00078 * 15 13 12 41 41 H 1.08999 * 109.47075 * 174.99972 * 15 13 12 42 42 H 0.96997 * 120.00031 * 179.97438 * 19 18 16 43 43 H 1.07995 * 120.00459 * 359.97438 * 25 24 13 44 44 H 1.08003 * 119.99164 * 180.22877 * 26 25 24 45 45 H 1.07996 * 119.99863 * 179.83805 * 27 26 25 46 46 H 1.07998 * 119.99659 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.00193 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2494 6 7 3.5000 -0.6179 1.3111 7 6 4.3342 -1.6424 0.6781 8 6 4.0757 0.4198 1.9501 9 8 3.3866 1.2327 2.5306 10 6 5.5627 0.5692 1.9439 11 8 6.2576 -0.2977 1.4556 12 7 6.1317 1.6691 2.4757 13 6 7.5890 1.8184 2.4642 14 1 7.9919 1.3809 1.5507 15 6 7.9501 3.3041 2.5204 16 6 7.4696 3.9856 1.2652 17 1 6.9583 3.4160 0.5033 18 6 7.6828 5.3364 1.0894 19 7 8.3050 6.0302 2.0174 20 14 7.0866 6.1815 -0.4662 21 1 5.6130 6.0335 -0.5763 22 1 7.4360 7.6237 -0.4111 23 1 7.7362 5.5591 -1.6477 24 6 8.1757 1.1132 3.6599 25 6 7.5433 1.1904 4.8867 26 6 8.0793 0.5404 5.9827 27 6 9.2521 -0.1801 5.8536 28 6 9.8871 -0.2529 4.6279 29 6 9.3490 0.3939 3.5312 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.7210 -1.5954 -1.2327 34 1 1.7515 -1.7714 1.2058 35 1 1.6053 -0.2616 2.1371 36 1 4.6307 -2.3808 1.4232 37 1 3.7689 -2.1327 -0.1143 38 1 5.2238 -1.1760 0.2548 39 1 5.5763 2.3620 2.8660 40 1 7.4732 3.7613 3.3875 41 1 9.0316 3.4123 2.6015 42 1 8.4553 6.9804 1.8936 43 1 6.6291 1.7564 4.9884 44 1 7.5833 0.5976 6.9403 45 1 9.6722 -0.6857 6.7104 46 1 10.8036 -0.8154 4.5272 47 1 9.8452 0.3369 2.5736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117611208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:18 Heat of formation + Delta-G solvation = -91.169470 kcal Electronic energy + Delta-G solvation = -29351.819975 eV Core-core repulsion = 25306.838747 eV Total energy + Delta-G solvation = -4044.981228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63598 -39.24440 -38.27597 -37.53408 -35.79765 -34.81619 -32.73233 -31.64879 -31.15494 -30.48414 -28.86824 -27.69874 -26.68659 -25.11516 -23.29547 -22.33406 -22.01308 -21.83964 -19.93736 -19.66941 -17.61983 -17.13907 -16.75127 -16.47652 -16.16128 -16.01834 -15.60957 -15.51003 -14.85757 -14.71019 -14.49279 -14.38580 -14.00398 -13.50156 -13.44179 -13.03268 -12.87798 -12.81738 -12.74113 -12.53679 -12.43369 -12.26218 -12.11312 -11.91059 -11.54536 -11.27929 -11.14279 -10.99625 -10.92498 -10.72454 -10.65630 -10.60402 -10.45019 -9.81060 -9.35839 -9.04566 -8.76516 -8.57336 -8.50065 -8.43287 -8.22737 -6.08342 -4.12242 1.70562 1.76254 1.77811 2.55291 3.31557 3.35729 3.39366 3.52726 3.76539 4.12590 4.19249 4.41328 4.52719 4.71463 4.82713 4.87207 5.10201 5.23420 5.24952 5.26357 5.28745 5.33979 5.39211 5.44236 5.50599 5.68203 5.78336 5.83411 5.87431 5.89864 6.05561 6.08598 6.30611 6.33996 6.38954 6.51316 6.76688 6.81678 6.82790 7.02329 7.08017 7.36945 7.40995 7.46520 7.51748 7.72375 7.87173 8.05743 8.23768 8.45533 8.92549 9.53157 11.02071 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007496 B = 0.004561 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3734.665999 B = 6137.726459 C = 8977.101493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.104 0.896 4 O -0.555 6.555 5 C 0.081 3.919 6 N -0.585 5.585 7 C 0.071 3.929 8 C 0.507 3.493 9 O -0.523 6.523 10 C 0.504 3.496 11 O -0.526 6.526 12 N -0.664 5.664 13 C 0.183 3.817 14 H 0.092 0.908 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.074 4.074 25 C -0.107 4.107 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.123 4.123 29 C -0.106 4.106 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.369 0.631 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.413 0.587 40 H 0.027 0.973 41 H 0.038 0.962 42 H 0.263 0.737 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.586 -16.454 1.815 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.024 3.976 3 H 0.122 0.878 4 O -0.360 6.360 5 C -0.042 4.042 6 N -0.318 5.318 7 C -0.071 4.071 8 C 0.290 3.710 9 O -0.399 6.399 10 C 0.285 3.715 11 O -0.405 6.405 12 N -0.314 5.314 13 C 0.079 3.921 14 H 0.110 0.890 15 C -0.014 4.014 16 C -0.562 4.562 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.216 0.784 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.250 0.750 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.101 -15.843 1.720 18.351 hybrid contribution -0.894 0.336 -0.464 1.062 sum -9.995 -15.506 1.256 18.491 Atomic orbital electron populations 1.22424 0.95648 1.02505 1.03366 1.22399 0.93118 0.97674 0.84402 0.87802 1.86697 1.77027 1.28555 1.43722 1.22326 0.80278 1.01481 1.00080 1.47552 1.06421 1.24453 1.53409 1.22382 0.96622 0.90849 0.97252 1.20469 0.89543 0.81551 0.79469 1.90738 1.64611 1.41552 1.42982 1.19877 0.88062 0.83525 0.80078 1.90612 1.63965 1.40866 1.45010 1.45868 1.08841 1.19945 1.56770 1.20425 0.77222 0.99697 0.94737 0.89007 1.19414 0.98222 0.85555 0.98167 1.21069 1.37954 0.93607 1.03549 0.92479 1.24962 0.94988 0.97482 0.96494 1.69942 1.41390 1.08023 1.33590 0.86657 0.79374 0.78392 0.83643 1.20169 1.21249 1.20163 1.20475 0.95228 0.96181 0.95672 1.20966 1.00057 0.99202 0.92346 1.21055 0.96492 0.98343 0.98341 1.21014 0.96286 1.00487 0.97335 1.21043 0.99815 1.00179 0.93077 1.21001 0.95791 0.96822 0.98845 0.91153 0.91395 0.92249 0.78443 0.89907 0.88621 0.92767 0.91767 0.87155 0.75040 0.95494 0.94373 0.92760 0.86425 0.86650 0.86780 0.86524 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.53 37.16 0.35 -1.00 16 2 C 0.08 0.86 3.83 -26.73 -0.10 0.75 16 3 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 4 O -0.56 -5.74 12.28 -35.23 -0.43 -6.17 16 5 C 0.08 0.82 5.06 -4.04 -0.02 0.80 16 6 N -0.59 -7.78 2.84 -182.08 -0.52 -8.30 16 7 C 0.07 0.84 9.32 59.85 0.56 1.40 16 8 C 0.51 8.45 7.73 -11.59 -0.09 8.36 16 9 O -0.52 -9.53 16.05 5.49 0.09 -9.44 16 10 C 0.50 9.21 7.73 -11.59 -0.09 9.12 16 11 O -0.53 -9.96 12.80 5.49 0.07 -9.89 16 12 N -0.66 -12.69 4.03 -55.36 -0.22 -12.91 16 13 C 0.18 3.70 2.11 -69.08 -0.15 3.55 16 14 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 15 C 0.02 0.57 4.49 -27.88 -0.13 0.44 16 16 C -0.52 -14.00 8.84 -34.44 -0.30 -14.30 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 20 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.07 -1.36 4.91 -104.62 -0.51 -1.88 16 25 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 26 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 28 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 29 C -0.11 -1.78 9.67 -39.59 -0.38 -2.17 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.37 2.17 9.04 45.56 0.41 2.59 16 34 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.10 1.02 7.37 -51.93 -0.38 0.64 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.59 7.24 -51.93 -0.38 0.21 16 38 H 0.11 1.61 5.35 -51.93 -0.28 1.34 16 39 H 0.41 7.91 8.09 -40.82 -0.33 7.58 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.12 1.96 7.73 -52.49 -0.41 1.55 16 44 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 45 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 47 H 0.12 1.92 8.04 -52.49 -0.42 1.50 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -32.04 395.90 -8.21 -40.25 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.36 Total: 11.24 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.52 Total: -2.17 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.00 Total: -46.21 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.27 Total: -25.50 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.04 -8.21 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117611208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.918 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds