Wall clock time and date at job start Tue Mar 31 2020 17:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47474 * 2 1 4 4 O 1.42897 * 109.47248 * 239.99391 * 2 1 3 5 5 C 1.53004 * 109.46784 * 119.99460 * 2 1 3 6 6 N 1.46505 * 109.47100 * 184.99712 * 5 2 1 7 7 C 1.46500 * 119.99909 * 270.00346 * 6 5 2 8 8 C 1.34774 * 119.99775 * 89.99803 * 6 5 2 9 9 O 1.21355 * 119.99973 * 3.63663 * 8 6 5 10 10 C 1.49450 * 120.00227 * 183.63169 * 8 6 5 11 11 O 1.21357 * 119.99578 * 354.17238 * 10 8 6 12 12 N 1.34770 * 120.00288 * 173.90007 * 10 8 6 13 13 C 1.46501 * 120.00280 * 180.27694 * 12 10 8 14 14 H 1.09001 * 109.47009 * 34.99661 * 13 12 10 15 15 C 1.52995 * 109.47529 * 154.99649 * 13 12 10 16 16 C 1.50703 * 109.47024 * 295.00205 * 15 13 12 17 17 H 1.07994 * 119.99899 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99643 * 179.97438 * 16 15 13 19 19 N 1.31517 * 120.00365 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99885 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47083 * 59.99503 * 20 18 16 22 22 H 1.48493 * 109.47004 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46927 * 299.99765 * 20 18 16 24 24 C 1.50704 * 109.47231 * 275.00104 * 13 12 10 25 25 C 1.38243 * 119.99313 * 319.72521 * 24 13 12 26 26 C 1.38239 * 119.99221 * 179.81168 * 25 24 13 27 27 C 1.38237 * 120.00304 * 0.39643 * 26 25 24 28 28 C 1.38238 * 119.99762 * 359.85416 * 27 26 25 29 29 C 1.38227 * 120.00335 * 139.99735 * 24 13 12 30 30 H 1.08995 * 109.47249 * 300.00859 * 1 2 3 31 31 H 1.09006 * 109.46742 * 60.00132 * 1 2 3 32 32 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 33 33 H 0.96705 * 114.00036 * 300.00299 * 4 2 1 34 34 H 1.09000 * 109.47147 * 64.99892 * 5 2 1 35 35 H 1.08999 * 109.47412 * 304.99774 * 5 2 1 36 36 H 1.09007 * 109.46863 * 263.99012 * 7 6 5 37 37 H 1.08994 * 109.47353 * 23.99240 * 7 6 5 38 38 H 1.09003 * 109.46957 * 143.99572 * 7 6 5 39 39 H 0.96998 * 120.00206 * 0.27453 * 12 10 8 40 40 H 1.09007 * 109.47002 * 55.00078 * 15 13 12 41 41 H 1.08999 * 109.47075 * 174.99972 * 15 13 12 42 42 H 0.96997 * 120.00031 * 179.97438 * 19 18 16 43 43 H 1.07995 * 120.00459 * 359.97438 * 25 24 13 44 44 H 1.08003 * 119.99164 * 180.22877 * 26 25 24 45 45 H 1.07996 * 119.99863 * 179.83805 * 27 26 25 46 46 H 1.07998 * 119.99659 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.00193 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2494 6 7 3.5000 -0.6179 1.3111 7 6 4.3342 -1.6424 0.6781 8 6 4.0757 0.4198 1.9501 9 8 3.3866 1.2327 2.5306 10 6 5.5627 0.5692 1.9439 11 8 6.2576 -0.2977 1.4556 12 7 6.1317 1.6691 2.4757 13 6 7.5890 1.8184 2.4642 14 1 7.9919 1.3809 1.5507 15 6 7.9501 3.3041 2.5204 16 6 7.4696 3.9856 1.2652 17 1 6.9583 3.4160 0.5033 18 6 7.6828 5.3364 1.0894 19 7 8.3050 6.0302 2.0174 20 14 7.0866 6.1815 -0.4662 21 1 5.6130 6.0335 -0.5763 22 1 7.4360 7.6237 -0.4111 23 1 7.7362 5.5591 -1.6477 24 6 8.1757 1.1132 3.6599 25 6 7.5433 1.1904 4.8867 26 6 8.0793 0.5404 5.9827 27 6 9.2521 -0.1801 5.8536 28 6 9.8871 -0.2529 4.6279 29 6 9.3490 0.3939 3.5312 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.7210 -1.5954 -1.2327 34 1 1.7515 -1.7714 1.2058 35 1 1.6053 -0.2616 2.1371 36 1 4.6307 -2.3808 1.4232 37 1 3.7689 -2.1327 -0.1143 38 1 5.2238 -1.1760 0.2548 39 1 5.5763 2.3620 2.8660 40 1 7.4732 3.7613 3.3875 41 1 9.0316 3.4123 2.6015 42 1 8.4553 6.9804 1.8936 43 1 6.6291 1.7564 4.9884 44 1 7.5833 0.5976 6.9403 45 1 9.6722 -0.6857 6.7104 46 1 10.8036 -0.8154 4.5272 47 1 9.8452 0.3369 2.5736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117611208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:17 Heat of formation + Delta-G solvation = -113.225543 kcal Electronic energy + Delta-G solvation = -29352.776399 eV Core-core repulsion = 25306.838747 eV Total energy + Delta-G solvation = -4045.937651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.96529 -40.52168 -39.47525 -38.60320 -37.19219 -36.09874 -34.73369 -32.60485 -32.42312 -31.70883 -30.59329 -28.55962 -27.92584 -26.77403 -24.59529 -23.81571 -23.34032 -22.78361 -21.38140 -21.01458 -18.96983 -18.56618 -18.26446 -17.64611 -17.57511 -17.05585 -16.86149 -16.64545 -16.52296 -16.11305 -15.84370 -15.42389 -15.19614 -14.86632 -14.70014 -14.41676 -14.20604 -14.06684 -13.95042 -13.72003 -13.61677 -13.50681 -13.31748 -12.97693 -12.92652 -12.69608 -12.65383 -12.47893 -12.36966 -12.18231 -11.93967 -11.88078 -11.63788 -11.44011 -11.39442 -10.63397 -10.40370 -10.16018 -9.77165 -9.70052 -9.55235 -8.22970 -6.33171 0.35386 0.48329 0.54810 1.32782 1.37683 1.38800 1.46790 2.13768 2.37460 2.49749 2.95013 3.11021 3.36051 3.44365 3.75696 3.92947 3.97719 4.00852 4.13842 4.19899 4.31584 4.35404 4.37475 4.45925 4.59649 4.60700 4.72133 4.74701 4.76487 4.83036 4.94756 5.06311 5.11050 5.17842 5.19062 5.24851 5.35898 5.38817 5.54014 5.59991 5.63445 5.74235 5.78386 5.91196 6.12190 6.17610 6.29210 6.68778 6.78441 6.88100 6.97960 7.35585 8.87565 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007496 B = 0.004561 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3734.665999 B = 6137.726459 C = 8977.101493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 H 0.063 0.937 4 O -0.573 6.573 5 C 0.079 3.921 6 N -0.574 5.574 7 C 0.071 3.929 8 C 0.502 3.498 9 O -0.547 6.547 10 C 0.500 3.500 11 O -0.535 6.535 12 N -0.669 5.669 13 C 0.199 3.801 14 H 0.074 0.926 15 C 0.037 3.963 16 C -0.533 4.533 17 H 0.052 0.948 18 C 0.014 3.986 19 N -0.923 5.923 20 Si 0.953 3.047 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.270 1.270 24 C -0.099 4.099 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.121 4.121 29 C -0.125 4.125 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.390 0.610 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.410 0.590 40 H 0.008 0.992 41 H 0.014 0.986 42 H 0.265 0.735 43 H 0.111 0.889 44 H 0.143 0.857 45 H 0.153 0.847 46 H 0.148 0.852 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.605 -18.948 2.042 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.028 3.972 3 H 0.081 0.919 4 O -0.381 6.381 5 C -0.043 4.043 6 N -0.306 5.306 7 C -0.070 4.070 8 C 0.285 3.715 9 O -0.425 6.425 10 C 0.281 3.719 11 O -0.414 6.414 12 N -0.319 5.319 13 C 0.095 3.905 14 H 0.092 0.908 15 C -0.001 4.001 16 C -0.571 4.571 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.563 5.563 20 Si 0.778 3.222 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.195 1.195 24 C -0.101 4.101 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.138 4.138 29 C -0.144 4.144 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.240 0.760 34 H 0.144 0.856 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.246 0.754 40 H 0.027 0.973 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.140 -18.392 1.920 21.090 hybrid contribution -0.558 0.996 -0.538 1.262 sum -10.698 -17.396 1.382 20.469 Atomic orbital electron populations 1.22340 0.93227 1.04327 1.03149 1.22210 0.94835 0.95704 0.84419 0.91865 1.86655 1.77507 1.30382 1.43594 1.22630 0.77777 1.04096 0.99789 1.47709 1.08131 1.23164 1.51587 1.22406 0.96061 0.90276 0.98302 1.20172 0.88461 0.82563 0.80333 1.90721 1.64568 1.42714 1.44525 1.20271 0.89184 0.82966 0.79449 1.90612 1.64635 1.41000 1.45132 1.45809 1.08290 1.20503 1.57262 1.19948 0.78132 0.97057 0.95360 0.90795 1.19149 0.96247 0.88264 0.96392 1.21356 1.37547 0.94012 1.04224 0.93019 1.25739 0.95160 0.98222 0.99428 1.70050 1.42569 1.08317 1.35363 0.85692 0.78860 0.77567 0.80103 1.19857 1.20484 1.19541 1.20339 0.96525 0.97907 0.95286 1.21053 1.00262 1.00168 0.92852 1.21408 0.96898 0.97445 0.98582 1.21485 0.95360 0.99257 0.98226 1.21420 1.00639 0.99319 0.92467 1.21181 0.95584 0.97568 1.00051 0.91100 0.91912 0.89374 0.75976 0.85568 0.89181 0.91793 0.88269 0.90051 0.75395 0.97326 0.96826 0.92626 0.87131 0.83929 0.82964 0.83393 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.53 71.98 0.69 -1.52 16 2 C 0.09 1.69 3.83 30.60 0.12 1.81 16 3 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 4 O -0.57 -10.67 12.28 -148.98 -1.83 -12.50 16 5 C 0.08 1.42 5.06 86.38 0.44 1.86 16 6 N -0.57 -14.74 2.84 -848.32 -2.41 -17.14 16 7 C 0.07 1.58 9.32 127.77 1.19 2.77 16 8 C 0.50 17.12 7.73 87.27 0.67 17.79 16 9 O -0.55 -20.57 16.05 -3.26 -0.05 -20.62 16 10 C 0.50 19.04 7.73 87.27 0.67 19.72 16 11 O -0.53 -20.93 12.80 -3.27 -0.04 -20.97 16 12 N -0.67 -27.15 4.03 -447.43 -1.80 -28.95 16 13 C 0.20 8.58 2.11 44.24 0.09 8.67 16 14 H 0.07 3.38 7.44 -2.39 -0.02 3.37 16 15 C 0.04 1.89 4.49 29.85 0.13 2.02 16 16 C -0.53 -29.78 8.84 25.60 0.23 -29.55 16 17 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 18 C 0.01 0.77 5.46 84.65 0.46 1.23 16 19 N -0.92 -54.94 13.29 21.45 0.28 -54.65 16 20 Si 0.95 44.83 29.54 68.60 2.03 46.85 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.10 -3.79 4.91 -19.86 -0.10 -3.89 16 25 C -0.12 -4.35 9.32 22.27 0.21 -4.14 16 26 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 27 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 28 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 29 C -0.13 -4.26 9.67 22.27 0.22 -4.04 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.39 3.23 9.04 -74.05 -0.67 2.56 16 34 H 0.13 1.22 8.07 -2.39 -0.02 1.20 16 35 H 0.09 1.80 7.37 -2.39 -0.02 1.78 16 36 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.10 1.51 7.24 -2.39 -0.02 1.49 16 38 H 0.08 2.37 5.35 -2.48 -0.01 2.36 16 39 H 0.41 16.90 8.09 -92.71 -0.75 16.15 16 40 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.26 14.93 8.31 -92.71 -0.77 14.15 16 43 H 0.11 3.88 7.73 -2.91 -0.02 3.86 16 44 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 45 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 46 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 47 H 0.12 3.96 8.04 -2.91 -0.02 3.94 16 Total: -1.00 -72.61 395.90 1.44 -71.17 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.43 Total: 33.36 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.69 Total: 3.47 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -3.93 Total: -100.75 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -1.92 Total: -54.10 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -72.61 1.44 -71.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117611208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.052 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds