Wall clock time and date at job start Tue Mar 31 2020 17:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47427 * 2 1 4 4 O 1.42893 * 109.46945 * 120.00622 * 2 1 3 5 5 C 1.53004 * 109.46706 * 240.00335 * 2 1 3 6 6 N 1.46500 * 109.47082 * 180.02562 * 5 2 1 7 7 C 1.46500 * 120.00257 * 89.99727 * 6 5 2 8 8 C 1.34777 * 119.99892 * 269.99660 * 6 5 2 9 9 O 1.21348 * 119.99863 * 5.35007 * 8 6 5 10 10 C 1.49448 * 119.99884 * 185.34076 * 8 6 5 11 11 O 1.21347 * 120.00438 * 5.98859 * 10 8 6 12 12 N 1.34783 * 119.99875 * 185.98427 * 10 8 6 13 13 C 1.46499 * 120.00155 * 180.02562 * 12 10 8 14 14 H 1.09003 * 109.46991 * 34.99731 * 13 12 10 15 15 C 1.52998 * 109.47241 * 155.00179 * 13 12 10 16 16 C 1.50693 * 109.47160 * 295.00005 * 15 13 12 17 17 H 1.08002 * 120.00082 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99970 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99782 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99914 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47350 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47027 * 120.00584 * 20 18 16 23 23 H 1.48500 * 109.47331 * 240.00671 * 20 18 16 24 24 C 1.50705 * 109.47140 * 275.00484 * 13 12 10 25 25 C 1.38238 * 119.99912 * 319.72370 * 24 13 12 26 26 C 1.38236 * 119.99983 * 179.78793 * 25 24 13 27 27 C 1.38238 * 119.99733 * 0.44304 * 26 25 24 28 28 C 1.38234 * 120.00160 * 359.81065 * 27 26 25 29 29 C 1.38229 * 119.99894 * 139.99756 * 24 13 12 30 30 H 1.09004 * 109.46891 * 300.00389 * 1 2 3 31 31 H 1.09001 * 109.46824 * 59.99675 * 1 2 3 32 32 H 1.08995 * 109.47620 * 179.97438 * 1 2 3 33 33 H 0.96700 * 114.00486 * 59.99442 * 4 2 1 34 34 H 1.09006 * 109.46945 * 300.00019 * 5 2 1 35 35 H 1.09001 * 109.47487 * 60.00397 * 5 2 1 36 36 H 1.08998 * 109.47180 * 95.24810 * 7 6 5 37 37 H 1.09002 * 109.47159 * 215.25025 * 7 6 5 38 38 H 1.09005 * 109.46938 * 335.25413 * 7 6 5 39 39 H 0.97004 * 119.99781 * 0.02562 * 12 10 8 40 40 H 1.09002 * 109.47003 * 55.00067 * 15 13 12 41 41 H 1.08999 * 109.46777 * 174.99862 * 15 13 12 42 42 H 0.97002 * 119.99298 * 179.97438 * 19 18 16 43 43 H 1.08000 * 119.99871 * 0.02562 * 25 24 13 44 44 H 1.07998 * 120.00079 * 180.27526 * 26 25 24 45 45 H 1.08004 * 119.99679 * 179.83376 * 27 26 25 46 46 H 1.07999 * 120.00231 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.00742 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 7 3.5049 -0.7218 -1.2491 7 6 4.2370 -1.8209 -0.6148 8 6 4.1793 0.2889 -1.8325 9 8 3.5769 1.2463 -2.2719 10 6 5.6689 0.2305 -1.9380 11 8 6.2625 -0.7719 -1.5982 12 7 6.3531 1.2912 -2.4107 13 6 7.8133 1.2338 -2.5147 14 1 8.1190 0.2221 -2.7814 15 6 8.2866 2.2108 -3.5928 16 6 7.7733 1.7627 -4.9369 17 1 7.1695 0.8706 -5.0144 18 6 8.0736 2.4923 -6.0677 19 7 8.8085 3.5789 -5.9732 20 14 7.4368 1.9373 -7.7337 21 1 6.6397 0.6950 -7.5703 22 1 6.5801 3.0016 -8.3158 23 1 8.5837 1.6744 -8.6396 24 6 8.4264 1.6111 -1.1907 25 6 7.8870 2.6455 -0.4489 26 6 8.4467 2.9887 0.7676 27 6 9.5514 2.3036 1.2380 28 6 10.0939 1.2727 0.4938 29 6 9.5315 0.9266 -0.7207 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7209 -1.5953 1.2328 34 1 1.6765 -1.7489 -1.2494 35 1 1.6767 -0.2073 -2.1393 36 1 4.4999 -2.5644 -1.3673 37 1 5.1455 -1.4339 -0.1535 38 1 3.6101 -2.2823 0.1482 39 1 5.8786 2.0926 -2.6820 40 1 7.9054 3.2078 -3.3722 41 1 9.3762 2.2337 -3.6092 42 1 9.0201 4.0919 -6.7688 43 1 7.0260 3.1829 -0.8181 44 1 8.0226 3.7939 1.3491 45 1 9.9903 2.5735 2.1872 46 1 10.9572 0.7377 0.8611 47 1 9.9554 0.1212 -1.3020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117611209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:21 Heat of formation + Delta-G solvation = -93.988508 kcal Electronic energy + Delta-G solvation = -29376.776935 eV Core-core repulsion = 25331.673465 eV Total energy + Delta-G solvation = -4045.103471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62361 -39.24562 -38.28292 -37.53135 -35.77704 -34.81761 -32.73077 -31.69934 -31.14248 -30.47528 -28.86420 -27.73091 -26.68863 -25.11507 -23.28972 -22.32893 -22.03268 -21.85402 -19.93573 -19.62321 -17.63666 -17.12918 -16.82890 -16.46923 -16.16202 -15.89568 -15.76732 -15.39128 -14.89231 -14.75069 -14.51285 -14.36939 -13.99755 -13.49000 -13.42555 -13.02633 -12.89218 -12.80366 -12.67489 -12.58379 -12.45417 -12.26025 -12.12178 -11.93756 -11.57074 -11.29793 -11.14575 -11.07658 -10.93222 -10.74095 -10.64294 -10.59018 -10.46733 -9.81596 -9.31816 -9.06996 -8.76487 -8.57950 -8.50950 -8.45217 -8.22005 -6.08854 -4.12400 1.72165 1.76519 1.78584 2.55488 3.28043 3.36165 3.40767 3.52443 3.77254 4.09378 4.20135 4.41001 4.49695 4.69359 4.81197 4.87062 5.08146 5.21488 5.24339 5.25946 5.28462 5.34682 5.36545 5.42039 5.51141 5.68615 5.74124 5.81005 5.88086 5.90581 5.98460 6.09113 6.31298 6.32814 6.39625 6.51717 6.73930 6.82498 6.83738 7.01864 7.08100 7.36405 7.37738 7.46992 7.51912 7.72940 7.87207 8.06414 8.23835 8.46252 8.92914 9.52984 11.01708 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008258 B = 0.004232 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.912803 B = 6614.498640 C = 9076.238601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 H 0.104 0.896 4 O -0.556 6.556 5 C 0.082 3.918 6 N -0.586 5.586 7 C 0.086 3.914 8 C 0.507 3.493 9 O -0.521 6.521 10 C 0.504 3.496 11 O -0.527 6.527 12 N -0.665 5.665 13 C 0.183 3.817 14 H 0.092 0.908 15 C 0.023 3.977 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 C -0.075 4.075 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.123 4.123 29 C -0.106 4.106 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.369 0.631 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.413 0.587 40 H 0.027 0.973 41 H 0.038 0.962 42 H 0.262 0.738 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 -8.293 14.510 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.025 3.975 3 H 0.122 0.878 4 O -0.361 6.361 5 C -0.041 4.041 6 N -0.320 5.320 7 C -0.056 4.056 8 C 0.290 3.710 9 O -0.396 6.396 10 C 0.284 3.716 11 O -0.405 6.405 12 N -0.315 5.315 13 C 0.079 3.921 14 H 0.110 0.890 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.216 0.784 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.249 0.751 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.145 -7.761 14.490 19.316 hybrid contribution -0.839 -0.370 -1.305 1.595 sum -10.984 -8.131 13.185 18.990 Atomic orbital electron populations 1.22432 0.95710 1.02561 1.03300 1.22377 0.93033 0.97655 0.84435 0.87764 1.86675 1.77085 1.28615 1.43730 1.22313 0.79888 1.01806 1.00074 1.47519 1.06064 1.23275 1.55105 1.22107 0.97451 0.88832 0.97221 1.20503 0.89131 0.82727 0.78682 1.90742 1.69995 1.31721 1.47158 1.19859 0.87550 0.84579 0.79642 1.90675 1.70267 1.31064 1.48490 1.45861 1.08248 1.16667 1.60755 1.20414 0.76862 1.02976 0.91799 0.89048 1.19420 0.97690 0.93303 0.91005 1.21151 1.32819 1.10582 0.91461 0.92368 1.24972 0.94986 0.94859 0.99214 1.69966 1.37561 1.16081 1.29336 0.86531 0.78693 0.78751 0.84040 1.19751 1.20948 1.20964 1.20474 0.95669 0.95082 0.96343 1.20955 1.00064 0.96953 0.94614 1.21053 0.96777 0.99932 0.96404 1.21015 0.97130 0.97106 0.99839 1.21042 0.99948 0.97890 0.95204 1.21000 0.96034 0.99608 0.95838 0.91450 0.91154 0.92229 0.78403 0.89881 0.88721 0.92328 0.88763 0.91875 0.75069 0.95495 0.94379 0.92882 0.86485 0.86644 0.86773 0.86530 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 9.53 37.16 0.35 -0.89 16 2 C 0.09 0.80 3.86 -26.73 -0.10 0.70 16 3 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 4 O -0.56 -5.32 12.15 -35.23 -0.43 -5.75 16 5 C 0.08 0.82 5.04 -4.04 -0.02 0.80 16 6 N -0.59 -7.69 2.80 -182.08 -0.51 -8.20 16 7 C 0.09 1.00 8.91 59.85 0.53 1.53 16 8 C 0.51 8.45 7.72 -11.59 -0.09 8.36 16 9 O -0.52 -9.55 16.13 5.50 0.09 -9.46 16 10 C 0.50 9.23 7.66 -11.58 -0.09 9.14 16 11 O -0.53 -10.03 13.05 5.50 0.07 -9.96 16 12 N -0.67 -12.75 4.03 -55.36 -0.22 -12.97 16 13 C 0.18 3.71 2.11 -69.08 -0.15 3.57 16 14 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 15 C 0.02 0.56 4.49 -27.89 -0.13 0.43 16 16 C -0.52 -13.98 8.84 -34.44 -0.30 -14.29 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.07 -1.37 4.91 -104.62 -0.51 -1.88 16 25 C -0.11 -1.84 9.32 -39.58 -0.37 -2.21 16 26 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 28 C -0.12 -1.80 10.05 -39.58 -0.40 -2.19 16 29 C -0.11 -1.79 9.67 -39.58 -0.38 -2.17 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.37 2.00 8.79 45.56 0.40 2.41 16 34 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.09 1.02 7.50 -51.93 -0.39 0.63 16 36 H 0.06 0.69 8.11 -51.93 -0.42 0.26 16 37 H 0.09 1.31 5.95 -51.93 -0.31 1.00 16 38 H 0.06 0.54 7.00 -51.93 -0.36 0.17 16 39 H 0.41 7.93 8.09 -40.82 -0.33 7.60 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.12 1.96 7.73 -52.49 -0.41 1.55 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.12 1.92 8.04 -52.49 -0.42 1.50 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -32.22 395.76 -8.26 -40.48 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.39 Total: 10.55 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.55 Total: -2.01 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.00 Total: -46.19 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.27 Total: -25.16 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.22 -8.26 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117611209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.509 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds