Wall clock time and date at job start Tue Mar 31 2020 17:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47427 * 2 1 4 4 O 1.42893 * 109.46945 * 120.00622 * 2 1 3 5 5 C 1.53004 * 109.46706 * 240.00335 * 2 1 3 6 6 N 1.46500 * 109.47082 * 180.02562 * 5 2 1 7 7 C 1.46500 * 120.00257 * 89.99727 * 6 5 2 8 8 C 1.34777 * 119.99892 * 269.99660 * 6 5 2 9 9 O 1.21348 * 119.99863 * 5.35007 * 8 6 5 10 10 C 1.49448 * 119.99884 * 185.34076 * 8 6 5 11 11 O 1.21347 * 120.00438 * 5.98859 * 10 8 6 12 12 N 1.34783 * 119.99875 * 185.98427 * 10 8 6 13 13 C 1.46499 * 120.00155 * 180.02562 * 12 10 8 14 14 H 1.09003 * 109.46991 * 34.99731 * 13 12 10 15 15 C 1.52998 * 109.47241 * 155.00179 * 13 12 10 16 16 C 1.50693 * 109.47160 * 295.00005 * 15 13 12 17 17 H 1.08002 * 120.00082 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99970 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99782 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99914 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47350 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47027 * 120.00584 * 20 18 16 23 23 H 1.48500 * 109.47331 * 240.00671 * 20 18 16 24 24 C 1.50705 * 109.47140 * 275.00484 * 13 12 10 25 25 C 1.38238 * 119.99912 * 319.72370 * 24 13 12 26 26 C 1.38236 * 119.99983 * 179.78793 * 25 24 13 27 27 C 1.38238 * 119.99733 * 0.44304 * 26 25 24 28 28 C 1.38234 * 120.00160 * 359.81065 * 27 26 25 29 29 C 1.38229 * 119.99894 * 139.99756 * 24 13 12 30 30 H 1.09004 * 109.46891 * 300.00389 * 1 2 3 31 31 H 1.09001 * 109.46824 * 59.99675 * 1 2 3 32 32 H 1.08995 * 109.47620 * 179.97438 * 1 2 3 33 33 H 0.96700 * 114.00486 * 59.99442 * 4 2 1 34 34 H 1.09006 * 109.46945 * 300.00019 * 5 2 1 35 35 H 1.09001 * 109.47487 * 60.00397 * 5 2 1 36 36 H 1.08998 * 109.47180 * 95.24810 * 7 6 5 37 37 H 1.09002 * 109.47159 * 215.25025 * 7 6 5 38 38 H 1.09005 * 109.46938 * 335.25413 * 7 6 5 39 39 H 0.97004 * 119.99781 * 0.02562 * 12 10 8 40 40 H 1.09002 * 109.47003 * 55.00067 * 15 13 12 41 41 H 1.08999 * 109.46777 * 174.99862 * 15 13 12 42 42 H 0.97002 * 119.99298 * 179.97438 * 19 18 16 43 43 H 1.08000 * 119.99871 * 0.02562 * 25 24 13 44 44 H 1.07998 * 120.00079 * 180.27526 * 26 25 24 45 45 H 1.08004 * 119.99679 * 179.83376 * 27 26 25 46 46 H 1.07999 * 120.00231 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.00742 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 7 3.5049 -0.7218 -1.2491 7 6 4.2370 -1.8209 -0.6148 8 6 4.1793 0.2889 -1.8325 9 8 3.5769 1.2463 -2.2719 10 6 5.6689 0.2305 -1.9380 11 8 6.2625 -0.7719 -1.5982 12 7 6.3531 1.2912 -2.4107 13 6 7.8133 1.2338 -2.5147 14 1 8.1190 0.2221 -2.7814 15 6 8.2866 2.2108 -3.5928 16 6 7.7733 1.7627 -4.9369 17 1 7.1695 0.8706 -5.0144 18 6 8.0736 2.4923 -6.0677 19 7 8.8085 3.5789 -5.9732 20 14 7.4368 1.9373 -7.7337 21 1 6.6397 0.6950 -7.5703 22 1 6.5801 3.0016 -8.3158 23 1 8.5837 1.6744 -8.6396 24 6 8.4264 1.6111 -1.1907 25 6 7.8870 2.6455 -0.4489 26 6 8.4467 2.9887 0.7676 27 6 9.5514 2.3036 1.2380 28 6 10.0939 1.2727 0.4938 29 6 9.5315 0.9266 -0.7207 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7209 -1.5953 1.2328 34 1 1.6765 -1.7489 -1.2494 35 1 1.6767 -0.2073 -2.1393 36 1 4.4999 -2.5644 -1.3673 37 1 5.1455 -1.4339 -0.1535 38 1 3.6101 -2.2823 0.1482 39 1 5.8786 2.0926 -2.6820 40 1 7.9054 3.2078 -3.3722 41 1 9.3762 2.2337 -3.6092 42 1 9.0201 4.0919 -6.7688 43 1 7.0260 3.1829 -0.8181 44 1 8.0226 3.7939 1.3491 45 1 9.9903 2.5735 2.1872 46 1 10.9572 0.7377 0.8611 47 1 9.9554 0.1212 -1.3020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117611209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:20 Heat of formation + Delta-G solvation = -116.119083 kcal Electronic energy + Delta-G solvation = -29377.736589 eV Core-core repulsion = 25331.673465 eV Total energy + Delta-G solvation = -4046.063124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95181 -40.52464 -39.47230 -38.58425 -37.17178 -36.08826 -34.73112 -32.60130 -32.42406 -31.71109 -30.59427 -28.56470 -27.92079 -26.77363 -24.58064 -23.81747 -23.34359 -22.77511 -21.38535 -20.97063 -18.97167 -18.58277 -18.26824 -17.73782 -17.45362 -17.07746 -16.82081 -16.58986 -16.49886 -16.13200 -15.89517 -15.38731 -15.20302 -14.85119 -14.69414 -14.39624 -14.21083 -14.08160 -13.93550 -13.72405 -13.58053 -13.46234 -13.28422 -12.96242 -12.95606 -12.71482 -12.64871 -12.53177 -12.40672 -12.16190 -11.93469 -11.89332 -11.64870 -11.40845 -11.34565 -10.64834 -10.41884 -10.18718 -9.77393 -9.71512 -9.55381 -8.22949 -6.33114 0.36158 0.47834 0.54527 1.33754 1.36797 1.38437 1.50152 2.13055 2.37973 2.50171 2.94911 3.11190 3.37420 3.45572 3.76494 3.92787 3.97709 4.00571 4.16164 4.19492 4.31180 4.34019 4.37496 4.47303 4.59743 4.60456 4.71868 4.75345 4.76178 4.84894 4.95987 5.08489 5.10290 5.16412 5.18981 5.22294 5.36388 5.38646 5.52487 5.59787 5.63252 5.74442 5.77518 5.91120 6.12345 6.17474 6.29679 6.68467 6.79029 6.87817 6.98073 7.35805 8.88057 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008258 B = 0.004232 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.912803 B = 6614.498640 C = 9076.238601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.069 0.931 4 O -0.572 6.572 5 C 0.078 3.922 6 N -0.574 5.574 7 C 0.085 3.915 8 C 0.502 3.498 9 O -0.546 6.546 10 C 0.500 3.500 11 O -0.536 6.536 12 N -0.670 5.670 13 C 0.199 3.801 14 H 0.074 0.926 15 C 0.037 3.963 16 C -0.532 4.532 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.956 3.044 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.276 1.276 24 C -0.099 4.099 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.125 4.125 28 C -0.120 4.120 29 C -0.125 4.125 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.389 0.611 34 H 0.124 0.876 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.410 0.590 40 H 0.008 0.992 41 H 0.013 0.987 42 H 0.265 0.735 43 H 0.110 0.890 44 H 0.142 0.858 45 H 0.152 0.848 46 H 0.149 0.851 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 -9.838 16.163 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.032 3.968 3 H 0.087 0.913 4 O -0.380 6.380 5 C -0.044 4.044 6 N -0.306 5.306 7 C -0.056 4.056 8 C 0.285 3.715 9 O -0.425 6.425 10 C 0.281 3.719 11 O -0.415 6.415 12 N -0.320 5.320 13 C 0.095 3.905 14 H 0.092 0.908 15 C -0.001 4.001 16 C -0.570 4.570 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.202 1.202 24 C -0.100 4.100 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.138 4.138 29 C -0.144 4.144 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.239 0.761 34 H 0.142 0.858 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.246 0.754 40 H 0.026 0.974 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.128 0.872 44 H 0.160 0.840 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.292 -9.360 16.170 21.831 hybrid contribution -0.475 0.053 -1.692 1.758 sum -11.767 -9.307 14.478 20.849 Atomic orbital electron populations 1.22350 0.93334 1.04224 1.03215 1.22171 0.94673 0.95867 0.84131 0.91257 1.86639 1.77531 1.30330 1.43507 1.22635 0.77470 1.04278 1.00010 1.47676 1.07603 1.22158 1.53183 1.22170 0.97344 0.88107 0.97984 1.20202 0.88174 0.83615 0.79554 1.90726 1.69979 1.32880 1.48874 1.20251 0.88633 0.83976 0.79058 1.90662 1.70890 1.31197 1.48724 1.45804 1.07808 1.17045 1.61300 1.19943 0.77761 1.00575 0.92186 0.90787 1.19152 0.95913 0.93350 0.91669 1.21424 1.32491 1.10268 0.92824 0.92933 1.25770 0.95202 0.94918 1.02851 1.70072 1.38748 1.17169 1.30427 0.85533 0.78272 0.78360 0.79698 1.19456 1.20368 1.20183 1.20342 0.97020 0.96805 0.95882 1.21042 1.00446 0.97038 0.95869 1.21401 0.96941 1.00491 0.95511 1.21483 0.96126 0.95851 1.00861 1.21421 1.00430 0.97940 0.93985 1.21184 0.95955 0.99971 0.97244 0.91653 0.91150 0.89664 0.76089 0.85771 0.89669 0.92162 0.91222 0.87906 0.75413 0.97388 0.96844 0.92653 0.87225 0.84020 0.82983 0.83356 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.53 71.98 0.69 -1.28 16 2 C 0.09 1.60 3.86 30.60 0.12 1.72 16 3 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 4 O -0.57 -9.60 12.15 -148.98 -1.81 -11.41 16 5 C 0.08 1.39 5.04 86.38 0.44 1.82 16 6 N -0.57 -14.59 2.80 -848.33 -2.37 -16.96 16 7 C 0.09 1.85 8.91 127.77 1.14 2.99 16 8 C 0.50 17.15 7.72 87.27 0.67 17.83 16 9 O -0.55 -20.79 16.13 -3.24 -0.05 -20.84 16 10 C 0.50 19.09 7.66 87.27 0.67 19.75 16 11 O -0.54 -21.04 13.05 -3.24 -0.04 -21.08 16 12 N -0.67 -27.27 4.03 -447.42 -1.80 -29.08 16 13 C 0.20 8.61 2.11 44.25 0.09 8.71 16 14 H 0.07 3.39 7.44 -2.39 -0.02 3.37 16 15 C 0.04 1.88 4.49 29.85 0.13 2.01 16 16 C -0.53 -29.69 8.84 25.60 0.23 -29.46 16 17 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 18 C 0.01 0.65 5.46 84.66 0.46 1.11 16 19 N -0.92 -54.96 13.29 21.45 0.28 -54.67 16 20 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 C -0.10 -3.81 4.91 -19.86 -0.10 -3.90 16 25 C -0.13 -4.42 9.32 22.27 0.21 -4.21 16 26 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 27 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 28 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 29 C -0.13 -4.27 9.67 22.27 0.22 -4.05 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.39 2.79 8.79 -74.06 -0.65 2.14 16 34 H 0.12 1.23 8.07 -2.38 -0.02 1.21 16 35 H 0.08 1.75 7.50 -2.39 -0.02 1.73 16 36 H 0.06 1.31 8.11 -2.39 -0.02 1.30 16 37 H 0.07 1.91 5.95 -2.39 -0.01 1.90 16 38 H 0.10 1.41 7.00 -2.38 -0.02 1.39 16 39 H 0.41 16.96 8.09 -92.71 -0.75 16.21 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.11 3.89 7.73 -2.91 -0.02 3.87 16 44 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 45 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 46 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 47 H 0.12 3.98 8.04 -2.91 -0.02 3.96 16 Total: -1.00 -72.77 395.76 1.45 -71.32 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -0.41 Total: 32.41 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 5.63 Total: 3.66 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -3.89 Total: -100.71 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -1.90 Total: -53.33 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -72.77 1.45 -71.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117611209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.799 kcal (2) G-P(sol) polarization free energy of solvation -72.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds