Wall clock time and date at job start Tue Mar 31 2020 17:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46980 * 2 1 4 4 C 1.53005 * 109.47257 * 240.00481 * 2 1 3 5 5 O 1.42900 * 109.46967 * 64.99864 * 4 2 1 6 6 C 1.35898 * 116.99554 * 179.97438 * 5 4 2 7 7 C 1.38734 * 120.06025 * 359.72884 * 6 5 4 8 8 C 1.38140 * 119.94630 * 179.73988 * 7 6 5 9 9 C 1.38268 * 120.05495 * 0.51181 * 8 7 6 10 10 C 1.38267 * 120.11046 * 359.76134 * 9 8 7 11 11 C 1.38139 * 120.05836 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47339 * 120.00210 * 2 1 3 13 13 O 1.21273 * 119.99911 * 119.99997 * 12 2 1 14 14 N 1.34780 * 119.99741 * 300.00427 * 12 2 1 15 15 C 1.46496 * 119.99446 * 179.97438 * 14 12 2 16 16 H 1.08999 * 110.89236 * 37.43120 * 15 14 12 17 17 C 1.54906 * 111.00586 * 273.54440 * 15 14 12 18 18 N 1.47431 * 104.83279 * 204.92245 * 17 15 14 19 19 C 1.36937 * 125.64997 * 204.09430 * 18 17 15 20 20 H 1.08005 * 119.99476 * 10.05726 * 19 18 17 21 21 C 1.38809 * 120.00423 * 190.05514 * 19 18 17 22 22 N 1.31614 * 120.00398 * 195.13821 * 21 19 18 23 23 Si 1.86800 * 119.99703 * 15.14195 * 21 19 18 24 24 H 1.48505 * 109.47219 * 54.48887 * 23 21 19 25 25 H 1.48498 * 109.47210 * 294.49091 * 23 21 19 26 26 H 1.48497 * 109.47206 * 174.48993 * 23 21 19 27 27 C 1.47022 * 108.70445 * 24.35113 * 18 17 15 28 28 C 1.54333 * 107.26472 * 358.59142 * 27 18 17 29 29 H 1.09004 * 110.67059 * 96.51772 * 28 27 18 30 30 O 1.42899 * 110.85257 * 219.66924 * 28 27 18 31 31 H 1.08997 * 109.47246 * 299.99559 * 1 2 3 32 32 H 1.09002 * 109.47000 * 59.99631 * 1 2 3 33 33 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47010 * 184.99728 * 4 2 1 35 35 H 1.08996 * 109.47010 * 304.99661 * 4 2 1 36 36 H 1.08003 * 120.02635 * 359.97438 * 7 6 5 37 37 H 1.08005 * 119.97416 * 180.27069 * 8 7 6 38 38 H 1.07998 * 119.94211 * 179.74631 * 9 8 7 39 39 H 1.07997 * 119.97135 * 179.97438 * 10 9 8 40 40 H 1.07998 * 120.03142 * 179.97438 * 11 10 9 41 41 H 0.97002 * 119.99967 * 359.97438 * 14 12 2 42 42 H 1.08995 * 110.36638 * 86.08281 * 17 15 14 43 43 H 1.09003 * 110.46174 * 323.79994 * 17 15 14 44 44 H 0.96997 * 119.99844 * 2.98073 * 22 21 19 45 45 H 1.09003 * 109.88013 * 118.12942 * 27 18 17 46 46 H 1.08998 * 109.88605 * 239.29917 * 27 18 17 47 47 H 0.96699 * 113.99739 * 293.69732 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6620 0.0170 -2.4131 6 6 2.0406 -0.4906 -3.6155 7 6 2.7661 -1.6717 -3.6739 8 6 3.1451 -2.1884 -4.8977 9 6 2.8113 -1.5239 -6.0633 10 6 2.0932 -0.3436 -6.0076 11 6 1.7070 0.1744 -4.7866 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6964 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 2.1946 -0.9410 3.6506 16 1 3.2107 -1.3063 3.5012 17 6 1.2430 -2.0955 4.0520 18 7 1.4643 -2.2817 5.4977 19 6 1.2262 -3.4331 6.1997 20 1 1.0000 -4.3490 5.6740 21 6 1.2756 -3.4230 7.5869 22 7 1.3456 -4.5570 8.2512 23 14 1.2427 -1.7998 8.5108 24 1 0.0542 -1.0149 8.0903 25 1 2.4764 -1.0316 8.2060 26 1 1.1712 -2.0626 9.9706 27 6 1.9772 -1.0247 6.0619 28 6 2.1114 -0.0210 4.8973 29 1 1.2346 0.6243 4.8425 30 8 3.3021 0.7576 5.0314 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1263 -0.7993 -1.2057 35 1 1.6055 -1.7197 -1.2953 36 1 3.0310 -2.1888 -2.7635 37 1 3.7061 -3.1101 -4.9439 38 1 3.1121 -1.9273 -7.0189 39 1 1.8340 0.1738 -6.9194 40 1 1.1465 1.0965 -4.7435 41 1 1.1493 0.5388 2.5436 42 1 1.4995 -3.0049 3.5087 43 1 0.2063 -1.8191 3.8596 44 1 1.4063 -5.3975 7.7709 45 1 1.2796 -0.6407 6.8063 46 1 2.9529 -1.1937 6.5175 47 1 3.3007 1.3498 5.7958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198679132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:21 Heat of formation + Delta-G solvation = -61.683050 kcal Electronic energy + Delta-G solvation = -28403.610441 eV Core-core repulsion = 24359.907840 eV Total energy + Delta-G solvation = -4043.702601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.61304 -39.95207 -38.44850 -37.62625 -35.45007 -34.43639 -33.98372 -31.99426 -31.29677 -30.06142 -28.76436 -27.90936 -27.05983 -24.56913 -23.52430 -22.79353 -21.98264 -21.22396 -20.40696 -20.02781 -18.72870 -17.67779 -17.38751 -16.91230 -16.58313 -16.30184 -16.14598 -15.91786 -15.09522 -15.01270 -14.72964 -14.53295 -14.03461 -13.83466 -13.71690 -13.57661 -13.35183 -12.94933 -12.85240 -12.82493 -12.66551 -12.50010 -12.11041 -11.92201 -11.87448 -11.69841 -11.51584 -11.22369 -11.05496 -10.98510 -10.62900 -10.46024 -10.03152 -9.83448 -9.35227 -9.30353 -9.13867 -9.05240 -8.72334 -8.48918 -7.14995 -6.37678 -3.29495 1.04173 1.15548 2.54808 2.57831 3.30427 3.34134 3.39518 3.50251 3.63448 4.17945 4.26702 4.52531 4.54599 4.55728 4.58994 4.66494 4.74764 4.84333 4.98661 5.03999 5.09878 5.13611 5.16419 5.24304 5.28404 5.30189 5.37336 5.40700 5.46963 5.62556 5.70670 5.74624 5.75081 5.88113 6.02318 6.11326 6.12322 6.23809 6.28014 6.42751 6.47514 6.51152 6.63842 7.12313 7.43445 7.55190 7.70387 8.14630 8.26591 8.96970 9.46645 10.11536 11.13349 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.002134 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.328359 B =13114.905725 C =13628.121641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.109 0.891 4 C 0.078 3.922 5 O -0.315 6.315 6 C 0.134 3.866 7 C -0.208 4.208 8 C -0.080 4.080 9 C -0.162 4.162 10 C -0.083 4.083 11 C -0.155 4.155 12 C 0.523 3.477 13 O -0.536 6.536 14 N -0.711 5.711 15 C 0.140 3.860 16 H 0.107 0.893 17 C 0.131 3.869 18 N -0.606 5.606 19 C -0.324 4.324 20 H 0.081 0.919 21 C -0.023 4.023 22 N -0.925 5.925 23 Si 1.073 2.927 24 H -0.298 1.298 25 H -0.286 1.286 26 H -0.299 1.299 27 C 0.083 3.917 28 C 0.086 3.914 29 H 0.068 0.932 30 O -0.558 6.558 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.400 0.600 42 H 0.057 0.943 43 H 0.029 0.971 44 H 0.263 0.737 45 H 0.035 0.965 46 H 0.061 0.939 47 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 14.443 -24.307 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 H 0.127 0.873 4 C 0.003 3.997 5 O -0.229 6.229 6 C 0.088 3.912 7 C -0.226 4.226 8 C -0.098 4.098 9 C -0.180 4.180 10 C -0.101 4.101 11 C -0.173 4.173 12 C 0.309 3.691 13 O -0.412 6.412 14 N -0.362 5.362 15 C 0.035 3.965 16 H 0.125 0.875 17 C 0.003 3.997 18 N -0.335 5.335 19 C -0.451 4.451 20 H 0.099 0.901 21 C -0.222 4.222 22 N -0.566 5.566 23 Si 0.907 3.093 24 H -0.227 1.227 25 H -0.214 1.214 26 H -0.227 1.227 27 C -0.042 4.042 28 C 0.026 3.974 29 H 0.086 0.914 30 O -0.363 6.363 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.234 0.766 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.335 14.126 -23.295 27.245 hybrid contribution -0.402 -0.188 -0.853 0.962 sum -0.067 13.937 -24.148 27.881 Atomic orbital electron populations 1.21775 0.91811 1.03297 1.03222 1.21159 0.98700 1.01555 0.91505 0.87317 1.22517 1.00545 0.94810 0.81831 1.85959 1.74258 1.50240 1.12400 1.19009 0.94220 0.92571 0.85372 1.21407 1.03966 0.97628 0.99640 1.20998 0.97778 0.99166 0.91839 1.21075 1.01841 0.96755 0.98368 1.20958 0.96714 0.95612 0.96865 1.20443 1.05091 1.01843 0.89970 1.20178 0.80099 0.84524 0.84335 1.90746 1.37708 1.26057 1.86684 1.45801 1.53395 1.31700 1.05300 1.22249 1.00359 0.92151 0.81752 0.87500 1.21869 0.95419 0.95880 0.86485 1.44600 1.76468 1.09356 1.03045 1.20187 1.48180 0.86128 0.90590 0.90118 1.25864 0.98853 1.04586 0.92930 1.70889 1.50376 0.97885 1.37432 0.83807 0.75939 0.74473 0.75119 1.22741 1.21394 1.22731 1.22692 0.98908 0.87699 0.94943 1.23050 0.87138 0.91817 0.95364 0.91373 1.86517 1.39791 1.58252 1.51737 0.91665 0.90636 0.91769 0.90818 0.90917 0.85080 0.85752 0.86000 0.85471 0.85267 0.76596 0.92466 0.95352 0.92709 0.94813 0.92105 0.77386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.99 37.16 0.33 -0.86 16 2 C -0.11 -1.06 2.96 -91.77 -0.27 -1.33 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.08 0.83 3.47 37.16 0.13 0.96 16 5 O -0.31 -3.35 9.67 -19.42 -0.19 -3.54 16 6 C 0.13 1.41 6.69 -39.21 -0.26 1.14 16 7 C -0.21 -2.11 9.04 -39.43 -0.36 -2.46 16 8 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 9 C -0.16 -1.27 10.04 -39.56 -0.40 -1.67 16 10 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 11 C -0.15 -1.40 9.99 -39.43 -0.39 -1.79 16 12 C 0.52 7.06 7.15 -10.98 -0.08 6.98 16 13 O -0.54 -9.43 15.66 5.56 0.09 -9.34 16 14 N -0.71 -9.20 5.12 -51.73 -0.27 -9.47 16 15 C 0.14 2.39 3.04 -65.78 -0.20 2.19 16 16 H 0.11 2.10 7.73 -51.93 -0.40 1.70 16 17 C 0.13 2.66 6.93 -2.53 -0.02 2.64 16 18 N -0.61 -14.77 3.33 -170.06 -0.57 -15.33 16 19 C -0.32 -9.30 10.56 -15.06 -0.16 -9.46 16 20 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 21 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 22 N -0.92 -29.04 13.71 55.49 0.76 -28.28 16 23 Si 1.07 26.13 24.52 -169.99 -4.17 21.96 16 24 H -0.30 -6.90 6.82 56.52 0.39 -6.51 16 25 H -0.29 -6.29 5.41 56.52 0.31 -5.98 16 26 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 27 C 0.08 1.74 4.39 -3.06 -0.01 1.73 16 28 C 0.09 1.38 3.94 -24.89 -0.10 1.28 16 29 H 0.07 0.90 7.99 -51.93 -0.42 0.49 16 30 O -0.56 -8.12 13.39 -35.23 -0.47 -8.60 16 31 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 32 H 0.07 0.58 7.82 -51.93 -0.41 0.17 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.83 7.46 -51.93 -0.39 0.44 16 35 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 36 H 0.13 1.30 6.30 -52.48 -0.33 0.97 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.40 3.86 7.93 -40.82 -0.32 3.54 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 45 H 0.03 0.73 3.89 -51.93 -0.20 0.53 16 46 H 0.06 1.37 6.61 -51.93 -0.34 1.03 16 47 H 0.38 3.81 9.12 45.56 0.42 4.23 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -35.46 379.20 -8.03 -43.49 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.26 Total: 6.94 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.68 Total: -3.55 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.07 Total: -53.08 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.57 Total: -21.48 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -4.17 Total: 21.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.46 -8.03 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198679132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.195 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds