Wall clock time and date at job start Tue Mar 31 2020 17:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46980 * 2 1 4 4 C 1.53005 * 109.47257 * 240.00481 * 2 1 3 5 5 O 1.42900 * 109.46967 * 64.99864 * 4 2 1 6 6 C 1.35898 * 116.99554 * 179.97438 * 5 4 2 7 7 C 1.38734 * 120.06025 * 359.72884 * 6 5 4 8 8 C 1.38140 * 119.94630 * 179.73988 * 7 6 5 9 9 C 1.38268 * 120.05495 * 0.51181 * 8 7 6 10 10 C 1.38267 * 120.11046 * 359.76134 * 9 8 7 11 11 C 1.38139 * 120.05836 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47339 * 120.00210 * 2 1 3 13 13 O 1.21273 * 119.99911 * 119.99997 * 12 2 1 14 14 N 1.34780 * 119.99741 * 300.00427 * 12 2 1 15 15 C 1.46496 * 119.99446 * 179.97438 * 14 12 2 16 16 H 1.08999 * 110.89236 * 37.43120 * 15 14 12 17 17 C 1.54906 * 111.00586 * 273.54440 * 15 14 12 18 18 N 1.47431 * 104.83279 * 204.92245 * 17 15 14 19 19 C 1.36937 * 125.64997 * 204.09430 * 18 17 15 20 20 H 1.08005 * 119.99476 * 10.05726 * 19 18 17 21 21 C 1.38809 * 120.00423 * 190.05514 * 19 18 17 22 22 N 1.31614 * 120.00398 * 195.13821 * 21 19 18 23 23 Si 1.86800 * 119.99703 * 15.14195 * 21 19 18 24 24 H 1.48505 * 109.47219 * 54.48887 * 23 21 19 25 25 H 1.48498 * 109.47210 * 294.49091 * 23 21 19 26 26 H 1.48497 * 109.47206 * 174.48993 * 23 21 19 27 27 C 1.47022 * 108.70445 * 24.35113 * 18 17 15 28 28 C 1.54333 * 107.26472 * 358.59142 * 27 18 17 29 29 H 1.09004 * 110.67059 * 96.51772 * 28 27 18 30 30 O 1.42899 * 110.85257 * 219.66924 * 28 27 18 31 31 H 1.08997 * 109.47246 * 299.99559 * 1 2 3 32 32 H 1.09002 * 109.47000 * 59.99631 * 1 2 3 33 33 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47010 * 184.99728 * 4 2 1 35 35 H 1.08996 * 109.47010 * 304.99661 * 4 2 1 36 36 H 1.08003 * 120.02635 * 359.97438 * 7 6 5 37 37 H 1.08005 * 119.97416 * 180.27069 * 8 7 6 38 38 H 1.07998 * 119.94211 * 179.74631 * 9 8 7 39 39 H 1.07997 * 119.97135 * 179.97438 * 10 9 8 40 40 H 1.07998 * 120.03142 * 179.97438 * 11 10 9 41 41 H 0.97002 * 119.99967 * 359.97438 * 14 12 2 42 42 H 1.08995 * 110.36638 * 86.08281 * 17 15 14 43 43 H 1.09003 * 110.46174 * 323.79994 * 17 15 14 44 44 H 0.96997 * 119.99844 * 2.98073 * 22 21 19 45 45 H 1.09003 * 109.88013 * 118.12942 * 27 18 17 46 46 H 1.08998 * 109.88605 * 239.29917 * 27 18 17 47 47 H 0.96699 * 113.99739 * 293.69732 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6620 0.0170 -2.4131 6 6 2.0406 -0.4906 -3.6155 7 6 2.7661 -1.6717 -3.6739 8 6 3.1451 -2.1884 -4.8977 9 6 2.8113 -1.5239 -6.0633 10 6 2.0932 -0.3436 -6.0076 11 6 1.7070 0.1744 -4.7866 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6964 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 2.1946 -0.9410 3.6506 16 1 3.2107 -1.3063 3.5012 17 6 1.2430 -2.0955 4.0520 18 7 1.4643 -2.2817 5.4977 19 6 1.2262 -3.4331 6.1997 20 1 1.0000 -4.3490 5.6740 21 6 1.2756 -3.4230 7.5869 22 7 1.3456 -4.5570 8.2512 23 14 1.2427 -1.7998 8.5108 24 1 0.0542 -1.0149 8.0903 25 1 2.4764 -1.0316 8.2060 26 1 1.1712 -2.0626 9.9706 27 6 1.9772 -1.0247 6.0619 28 6 2.1114 -0.0210 4.8973 29 1 1.2346 0.6243 4.8425 30 8 3.3021 0.7576 5.0314 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1263 -0.7993 -1.2057 35 1 1.6055 -1.7197 -1.2953 36 1 3.0310 -2.1888 -2.7635 37 1 3.7061 -3.1101 -4.9439 38 1 3.1121 -1.9273 -7.0189 39 1 1.8340 0.1738 -6.9194 40 1 1.1465 1.0965 -4.7435 41 1 1.1493 0.5388 2.5436 42 1 1.4995 -3.0049 3.5087 43 1 0.2063 -1.8191 3.8596 44 1 1.4063 -5.3975 7.7709 45 1 1.2796 -0.6407 6.8063 46 1 2.9529 -1.1937 6.5175 47 1 3.3007 1.3498 5.7958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198679132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:20 Heat of formation + Delta-G solvation = -90.098902 kcal Electronic energy + Delta-G solvation = -28404.842645 eV Core-core repulsion = 24359.907840 eV Total energy + Delta-G solvation = -4044.934805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57222 -40.92883 -39.78385 -38.39870 -36.86554 -35.77123 -34.98503 -33.95942 -31.95917 -30.83068 -30.33370 -29.47265 -27.81457 -26.13940 -24.67495 -23.50973 -22.88614 -22.80404 -21.91335 -21.07888 -19.77122 -19.46683 -18.55699 -17.93080 -17.91041 -17.21324 -16.90524 -16.76837 -16.51398 -16.20606 -16.04155 -15.55749 -15.34197 -14.96075 -14.81612 -14.55705 -14.42359 -14.36888 -14.33034 -14.16454 -13.54701 -13.51242 -13.38276 -13.24970 -13.03164 -12.73320 -12.49315 -12.30383 -12.20915 -12.10062 -11.84695 -11.69767 -11.50931 -11.29552 -11.12013 -10.97902 -10.65168 -10.27767 -9.96750 -9.19997 -9.19739 -8.72444 -5.55619 0.37729 0.47411 1.36423 1.46291 1.49411 1.61288 1.72996 2.37855 2.54421 2.83481 2.89469 3.07236 3.28637 3.39776 3.57207 3.72444 3.75126 3.85715 3.90014 3.95724 3.98270 4.16271 4.21143 4.27821 4.33797 4.36575 4.47984 4.49855 4.55048 4.58230 4.72304 4.72910 4.84192 4.89131 4.90372 4.94027 5.07860 5.24491 5.29689 5.35720 5.46404 5.48074 5.59496 5.83447 6.00767 6.35396 6.42173 6.73485 6.81462 7.11257 7.33257 7.97107 8.80239 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.002134 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.328359 B =13114.905725 C =13628.121641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.136 0.864 4 C 0.082 3.918 5 O -0.315 6.315 6 C 0.109 3.891 7 C -0.227 4.227 8 C -0.091 4.091 9 C -0.163 4.163 10 C -0.082 4.082 11 C -0.162 4.162 12 C 0.521 3.479 13 O -0.583 6.583 14 N -0.694 5.694 15 C 0.153 3.847 16 H 0.075 0.925 17 C 0.130 3.870 18 N -0.628 5.628 19 C -0.319 4.319 20 H 0.040 0.960 21 C -0.083 4.083 22 N -0.960 5.960 23 Si 1.113 2.887 24 H -0.270 1.270 25 H -0.246 1.246 26 H -0.312 1.312 27 C 0.071 3.929 28 C 0.109 3.891 29 H 0.116 0.884 30 O -0.563 6.563 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.422 0.578 42 H 0.025 0.975 43 H 0.049 0.951 44 H 0.246 0.754 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 18.962 -25.977 32.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.154 0.846 4 C 0.007 3.993 5 O -0.229 6.229 6 C 0.064 3.936 7 C -0.246 4.246 8 C -0.109 4.109 9 C -0.181 4.181 10 C -0.100 4.100 11 C -0.181 4.181 12 C 0.309 3.691 13 O -0.463 6.463 14 N -0.347 5.347 15 C 0.046 3.954 16 H 0.093 0.907 17 C 0.003 3.997 18 N -0.357 5.357 19 C -0.448 4.448 20 H 0.058 0.942 21 C -0.276 4.276 22 N -0.603 5.603 23 Si 0.939 3.061 24 H -0.197 1.197 25 H -0.171 1.171 26 H -0.241 1.241 27 C -0.054 4.054 28 C 0.049 3.951 29 H 0.133 0.867 30 O -0.371 6.371 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.161 0.839 41 H 0.260 0.740 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.419 18.717 -25.019 31.248 hybrid contribution -0.129 -1.714 -0.505 1.791 sum -0.548 17.003 -25.525 30.675 Atomic orbital electron populations 1.21795 0.90173 1.02909 1.04875 1.21105 0.99752 1.01942 0.88744 0.84587 1.22384 0.99719 0.94578 0.82659 1.85925 1.74454 1.50128 1.12387 1.19301 0.95295 0.93231 0.85759 1.21483 1.04964 0.98129 1.00021 1.21266 0.97976 0.99890 0.91805 1.21438 1.01062 0.96637 0.98964 1.21359 0.95685 0.95460 0.97496 1.20738 1.05130 1.02318 0.89865 1.20871 0.79035 0.83852 0.85356 1.90739 1.39860 1.28346 1.87342 1.45548 1.53356 1.31914 1.03838 1.21722 0.97751 0.91885 0.84081 0.90678 1.21949 0.97285 0.96265 0.84164 1.44593 1.76883 1.09559 1.04631 1.20029 1.46887 0.86800 0.91040 0.94203 1.27430 0.98509 1.07242 0.94378 1.71017 1.53546 0.98093 1.37683 0.83403 0.78710 0.71126 0.72871 1.19730 1.17084 1.24124 1.22926 0.97794 0.87273 0.97364 1.22835 0.89421 0.91184 0.91659 0.86702 1.86491 1.39152 1.58335 1.53156 0.89461 0.89515 0.93207 0.92145 0.92286 0.86130 0.84478 0.83548 0.82515 0.83887 0.73973 0.95700 0.93337 0.94561 0.93640 0.93905 0.74632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.99 71.98 0.65 -1.32 16 2 C -0.09 -1.68 2.96 -11.54 -0.03 -1.71 16 3 H 0.14 1.75 8.14 -2.38 -0.02 1.73 16 4 C 0.08 1.77 3.47 71.98 0.25 2.02 16 5 O -0.31 -6.51 9.67 -92.41 -0.89 -7.41 16 6 C 0.11 2.27 6.69 22.51 0.15 2.42 16 7 C -0.23 -4.75 9.04 22.37 0.20 -4.55 16 8 C -0.09 -1.56 10.04 22.25 0.22 -1.34 16 9 C -0.16 -2.25 10.04 22.28 0.22 -2.02 16 10 C -0.08 -1.08 10.04 22.25 0.22 -0.85 16 11 C -0.16 -2.68 9.99 22.37 0.22 -2.45 16 12 C 0.52 13.55 7.15 87.66 0.63 14.18 16 13 O -0.58 -21.19 15.66 -3.01 -0.05 -21.24 16 14 N -0.69 -16.15 5.12 -435.97 -2.23 -18.38 16 15 C 0.15 4.95 3.04 46.39 0.14 5.10 16 16 H 0.08 2.97 7.73 -2.39 -0.02 2.95 16 17 C 0.13 5.29 6.93 86.85 0.60 5.89 16 18 N -0.63 -30.60 3.33 -691.96 -2.30 -32.91 16 19 C -0.32 -19.03 10.56 84.03 0.89 -18.14 16 20 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 21 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 22 N -0.96 -62.80 13.71 21.65 0.30 -62.50 16 23 Si 1.11 51.57 24.52 68.60 1.68 53.25 16 24 H -0.27 -11.25 6.82 99.48 0.68 -10.57 16 25 H -0.25 -9.78 5.41 99.48 0.54 -9.24 16 26 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 27 C 0.07 2.80 4.39 86.73 0.38 3.18 16 28 C 0.11 3.04 3.94 31.79 0.13 3.17 16 29 H 0.12 2.26 7.99 -2.39 -0.02 2.24 16 30 O -0.56 -13.89 13.39 -148.98 -2.00 -15.89 16 31 H 0.09 0.85 7.56 -2.39 -0.02 0.83 16 32 H 0.09 1.08 7.82 -2.39 -0.02 1.06 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.43 7.46 -2.39 -0.02 1.41 16 35 H 0.06 1.40 7.68 -2.39 -0.02 1.38 16 36 H 0.12 2.65 6.30 -2.91 -0.02 2.63 16 37 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 40 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.42 6.15 7.93 -92.71 -0.74 5.42 16 42 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 45 H 0.05 1.74 3.89 -2.39 -0.01 1.73 16 46 H 0.04 1.83 6.61 -2.39 -0.02 1.82 16 47 H 0.40 5.92 9.12 -74.06 -0.68 5.25 16 Total: -1.00 -83.23 379.20 -0.80 -84.03 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.65 Total: 22.03 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.34 Total: -1.00 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -4.24 Total: -113.78 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -2.94 Total: -44.53 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 1.68 Total: 53.25 kcal Total: -83.23 -0.80 -84.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198679132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.070 kcal (2) G-P(sol) polarization free energy of solvation -83.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds