Wall clock time and date at job start Tue Mar 31 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00487 * 2 1 4 4 H 1.09002 * 110.63763 * 26.85558 * 3 2 1 5 5 C 1.54336 * 111.00092 * 263.78421 * 3 2 1 6 6 N 1.47023 * 107.26300 * 219.59716 * 5 3 2 7 7 C 1.36931 * 125.64661 * 178.85018 * 6 5 3 8 8 H 1.08005 * 120.00360 * 179.69287 * 7 6 5 9 9 C 1.38814 * 120.00156 * 359.41822 * 7 6 5 10 10 N 1.31622 * 119.99686 * 0.27344 * 9 7 6 11 11 Si 1.86804 * 120.00069 * 180.27703 * 9 7 6 12 12 H 1.48504 * 109.46861 * 89.99793 * 11 9 7 13 13 H 1.48501 * 109.46834 * 209.99748 * 11 9 7 14 14 H 1.48501 * 109.46852 * 329.99830 * 11 9 7 15 15 C 1.47425 * 108.70473 * 358.58520 * 6 5 3 16 16 C 1.54913 * 104.82890 * 24.35638 * 15 6 5 17 17 H 1.08993 * 111.00446 * 81.10748 * 16 15 6 18 18 N 1.46504 * 111.00230 * 204.91617 * 16 15 6 19 19 C 1.34776 * 119.99885 * 273.54567 * 18 16 15 20 20 O 1.21282 * 120.00091 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99775 * 179.97438 * 19 18 16 22 22 H 1.09002 * 109.47270 * 304.99939 * 21 19 18 23 23 C 1.53002 * 109.46987 * 65.00319 * 21 19 18 24 24 O 1.42901 * 109.46598 * 185.00120 * 21 19 18 25 25 C 1.35910 * 116.99517 * 155.32801 * 24 21 19 26 26 C 1.38731 * 120.05580 * 5.07734 * 25 24 21 27 27 C 1.38146 * 119.94001 * 179.69853 * 26 25 24 28 28 C 1.38268 * 120.05487 * 0.60421 * 27 26 25 29 29 C 1.38259 * 120.11155 * 359.67343 * 28 27 26 30 30 C 1.38142 * 120.05821 * 0.02713 * 29 28 27 31 31 H 1.09006 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47181 * 300.00105 * 1 2 3 33 33 H 1.08997 * 109.46935 * 59.99970 * 1 2 3 34 34 H 1.09004 * 109.99322 * 100.12288 * 5 3 2 35 35 H 1.08999 * 109.77690 * 338.95208 * 5 3 2 36 36 H 0.97002 * 119.99494 * 180.02562 * 10 9 7 37 37 H 1.08992 * 110.36807 * 143.19127 * 15 6 5 38 38 H 1.08999 * 110.36603 * 265.52148 * 15 6 5 39 39 H 0.97002 * 119.99776 * 93.54098 * 18 16 15 40 40 H 1.08997 * 109.46742 * 59.99595 * 23 21 19 41 41 H 1.08998 * 109.46612 * 179.97438 * 23 21 19 42 42 H 1.08997 * 109.46961 * 299.99491 * 23 21 19 43 43 H 1.07995 * 120.02857 * 0.02562 * 26 25 24 44 44 H 1.08003 * 119.97187 * 180.32325 * 27 26 25 45 45 H 1.07999 * 119.93766 * 179.69666 * 28 27 26 46 46 H 1.08000 * 119.97026 * 180.02562 * 29 28 27 47 47 H 1.08004 * 120.02618 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0265 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3550 7 6 4.3517 2.9802 -2.4156 8 1 5.2931 3.4841 -2.2532 9 6 3.8387 2.8653 -3.7003 10 7 2.6914 2.2513 -3.8983 11 14 4.7766 3.5821 -5.1481 12 1 5.7030 2.5577 -5.6938 13 1 3.8173 3.9946 -6.2040 14 1 5.5551 4.7637 -4.6975 15 6 4.0972 2.4945 0.0544 16 6 3.3817 1.2956 0.7255 17 1 3.9176 0.3655 0.5370 18 7 3.2165 1.5208 2.1637 19 6 4.2043 1.1837 3.0164 20 8 5.2301 0.6943 2.5931 21 6 4.0345 1.4159 4.4958 22 1 3.7899 2.4631 4.6735 23 6 2.9037 0.5311 5.0244 24 8 5.2505 1.0894 5.1717 25 6 5.4723 1.6936 6.3687 26 6 4.4939 2.4998 6.9320 27 6 4.7195 3.1078 8.1518 28 6 5.9240 2.9234 8.8052 29 6 6.9029 2.1250 8.2432 30 6 6.6799 1.5098 7.0265 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6128 2.4181 -1.8233 35 1 2.4706 0.8723 -2.0758 36 1 2.3332 2.1707 -4.7962 37 1 5.1787 2.3786 0.1247 38 1 3.7842 3.4305 0.5171 39 1 2.3962 1.9126 2.5022 40 1 3.1485 -0.5160 4.8466 41 1 2.7813 0.6988 6.0944 42 1 1.9763 0.7802 4.5088 43 1 3.5547 2.6478 6.4199 44 1 3.9561 3.7313 8.5933 45 1 6.1002 3.4035 9.7564 46 1 7.8427 1.9822 8.7557 47 1 7.4448 0.8859 6.5881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213803662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:47 Heat of formation + Delta-G solvation = -52.375013 kcal Electronic energy + Delta-G solvation = -28850.564268 eV Core-core repulsion = 24807.265294 eV Total energy + Delta-G solvation = -4043.298974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.78617 -39.57150 -38.29133 -37.34910 -35.92139 -34.20779 -32.61662 -31.58626 -30.98837 -29.87254 -28.78686 -27.20844 -26.16111 -25.09161 -24.10329 -23.02888 -22.34554 -20.68498 -20.56495 -19.91195 -18.62988 -17.71948 -16.79095 -16.65837 -16.24332 -15.86422 -15.70130 -15.47536 -14.83002 -14.73456 -14.51323 -14.40176 -14.16894 -13.98447 -13.69231 -13.37627 -13.27032 -12.91181 -12.77233 -12.65651 -12.28856 -12.07439 -11.92007 -11.82915 -11.62713 -11.31165 -11.25752 -11.04958 -11.02760 -10.81300 -10.78818 -10.16129 -10.04303 -9.81454 -9.72527 -9.27195 -9.16239 -8.83357 -8.62112 -8.43989 -6.91063 -5.74931 -3.09963 1.06289 1.18433 2.49217 2.62661 3.40289 3.45054 3.46518 3.49969 3.53109 4.08085 4.35374 4.47888 4.54730 4.60037 4.61715 4.68279 4.85792 5.04449 5.09768 5.11998 5.26410 5.31605 5.33309 5.40754 5.46159 5.52529 5.60214 5.66714 5.73220 5.75835 5.80431 5.87859 6.00283 6.05171 6.10995 6.12936 6.26347 6.44914 6.48918 6.61016 6.78682 7.14557 7.22035 7.44629 7.55598 7.68744 7.83084 8.17951 8.27387 9.16009 9.75934 10.38625 11.36577 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002550 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.505145 B =10976.196780 C =12198.592946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.135 3.865 17 H 0.106 0.894 18 N -0.711 5.711 19 C 0.517 3.483 20 O -0.511 6.511 21 C 0.067 3.933 22 H 0.098 0.902 23 C -0.175 4.175 24 O -0.283 6.283 25 C 0.133 3.867 26 C -0.214 4.214 27 C -0.080 4.080 28 C -0.162 4.162 29 C -0.080 4.080 30 C -0.150 4.150 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.253 0.747 37 H 0.052 0.948 38 H 0.023 0.977 39 H 0.396 0.604 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.130 0.870 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 -0.250 24.384 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.030 3.970 17 H 0.124 0.876 18 N -0.364 5.364 19 C 0.301 3.699 20 O -0.385 6.385 21 C 0.007 3.993 22 H 0.115 0.885 23 C -0.232 4.232 24 O -0.195 6.195 25 C 0.088 3.912 26 C -0.232 4.232 27 C -0.098 4.098 28 C -0.181 4.181 29 C -0.099 4.099 30 C -0.169 4.169 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.230 0.770 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.357 -0.915 23.710 23.844 hybrid contribution -0.488 0.934 -0.599 1.212 sum -2.845 0.019 23.111 23.285 Atomic orbital electron populations 1.22716 0.81698 1.02104 0.99749 1.87916 1.19095 1.27490 1.95031 1.23836 0.92771 0.84102 0.99569 0.91885 1.21564 0.88224 0.97303 0.88937 1.44255 1.21284 1.66530 1.00715 1.19081 1.02499 1.29376 0.84682 0.90117 1.24824 0.97449 1.00672 0.97400 1.69936 1.19294 1.47225 1.20574 0.86071 0.78648 0.78599 0.82162 1.21455 1.21662 1.20624 1.21831 0.97969 0.93678 0.86254 1.22432 0.96619 1.01132 0.76823 0.87648 1.45818 1.18784 1.64396 1.07353 1.19942 0.84130 0.78983 0.86866 1.90771 1.27434 1.41930 1.78344 1.22227 0.85088 1.01053 0.90922 0.88452 1.22328 0.96996 1.01506 1.02415 1.86241 1.39289 1.63586 1.30418 1.19124 0.94212 0.92428 0.85472 1.21324 1.00172 1.02994 0.98730 1.20948 0.97096 0.97781 0.94020 1.21066 0.94363 1.01595 1.01050 1.20984 0.99090 0.95542 0.94234 1.20513 0.95853 1.04159 0.96336 0.90197 0.94862 0.93599 0.93314 0.91834 0.93643 0.92985 0.95939 0.77016 0.90471 0.90721 0.90167 0.85247 0.85814 0.85993 0.85359 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.55 16 2 O -0.38 -6.69 10.45 -35.23 -0.37 -7.06 16 3 C 0.06 1.03 3.05 -24.89 -0.08 0.95 16 4 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 5 C 0.17 3.96 5.16 -3.06 -0.02 3.94 16 6 N -0.60 -15.41 3.39 -170.06 -0.58 -15.99 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 9 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 10 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 11 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 C 0.13 2.78 6.93 -2.53 -0.02 2.77 16 16 C 0.13 2.49 3.04 -65.78 -0.20 2.29 16 17 H 0.11 2.24 7.73 -51.93 -0.40 1.84 16 18 N -0.71 -10.00 5.19 -51.73 -0.27 -10.27 16 19 C 0.52 7.90 7.18 -10.98 -0.08 7.82 16 20 O -0.51 -10.35 16.25 -14.31 -0.23 -10.58 16 21 C 0.07 0.76 2.64 -27.88 -0.07 0.69 16 22 H 0.10 0.87 6.31 -51.93 -0.33 0.54 16 23 C -0.17 -1.49 9.12 37.16 0.34 -1.15 16 24 O -0.28 -3.87 9.34 -39.32 -0.37 -4.24 16 25 C 0.13 1.54 6.60 -39.22 -0.26 1.29 16 26 C -0.21 -1.99 8.24 -39.43 -0.32 -2.31 16 27 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 28 C -0.16 -1.28 10.04 -39.56 -0.40 -1.68 16 29 C -0.08 -0.69 10.04 -39.61 -0.40 -1.08 16 30 C -0.15 -1.60 9.99 -39.43 -0.39 -1.99 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 1.26 7.53 -51.93 -0.39 0.87 16 35 H 0.06 1.74 7.28 -51.93 -0.38 1.36 16 36 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.40 4.11 8.30 -40.82 -0.34 3.77 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.53 6.90 -51.93 -0.36 0.18 16 42 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 43 H 0.13 0.96 5.43 -52.49 -0.29 0.67 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -34.69 386.75 -8.95 -43.64 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.06 Total: 2.67 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -1.45 Total: 5.17 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.27 Total: -52.61 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.97 Total: -21.88 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.69 -8.95 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213803662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.738 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds