Wall clock time and date at job start Tue Mar 31 2020 18:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00487 * 2 1 4 4 H 1.09002 * 110.63763 * 26.85558 * 3 2 1 5 5 C 1.54336 * 111.00092 * 263.78421 * 3 2 1 6 6 N 1.47023 * 107.26300 * 219.59716 * 5 3 2 7 7 C 1.36931 * 125.64661 * 178.85018 * 6 5 3 8 8 H 1.08005 * 120.00360 * 179.69287 * 7 6 5 9 9 C 1.38814 * 120.00156 * 359.41822 * 7 6 5 10 10 N 1.31622 * 119.99686 * 0.27344 * 9 7 6 11 11 Si 1.86804 * 120.00069 * 180.27703 * 9 7 6 12 12 H 1.48504 * 109.46861 * 89.99793 * 11 9 7 13 13 H 1.48501 * 109.46834 * 209.99748 * 11 9 7 14 14 H 1.48501 * 109.46852 * 329.99830 * 11 9 7 15 15 C 1.47425 * 108.70473 * 358.58520 * 6 5 3 16 16 C 1.54913 * 104.82890 * 24.35638 * 15 6 5 17 17 H 1.08993 * 111.00446 * 81.10748 * 16 15 6 18 18 N 1.46504 * 111.00230 * 204.91617 * 16 15 6 19 19 C 1.34776 * 119.99885 * 273.54567 * 18 16 15 20 20 O 1.21282 * 120.00091 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99775 * 179.97438 * 19 18 16 22 22 H 1.09002 * 109.47270 * 304.99939 * 21 19 18 23 23 C 1.53002 * 109.46987 * 65.00319 * 21 19 18 24 24 O 1.42901 * 109.46598 * 185.00120 * 21 19 18 25 25 C 1.35910 * 116.99517 * 155.32801 * 24 21 19 26 26 C 1.38731 * 120.05580 * 5.07734 * 25 24 21 27 27 C 1.38146 * 119.94001 * 179.69853 * 26 25 24 28 28 C 1.38268 * 120.05487 * 0.60421 * 27 26 25 29 29 C 1.38259 * 120.11155 * 359.67343 * 28 27 26 30 30 C 1.38142 * 120.05821 * 0.02713 * 29 28 27 31 31 H 1.09006 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47181 * 300.00105 * 1 2 3 33 33 H 1.08997 * 109.46935 * 59.99970 * 1 2 3 34 34 H 1.09004 * 109.99322 * 100.12288 * 5 3 2 35 35 H 1.08999 * 109.77690 * 338.95208 * 5 3 2 36 36 H 0.97002 * 119.99494 * 180.02562 * 10 9 7 37 37 H 1.08992 * 110.36807 * 143.19127 * 15 6 5 38 38 H 1.08999 * 110.36603 * 265.52148 * 15 6 5 39 39 H 0.97002 * 119.99776 * 93.54098 * 18 16 15 40 40 H 1.08997 * 109.46742 * 59.99595 * 23 21 19 41 41 H 1.08998 * 109.46612 * 179.97438 * 23 21 19 42 42 H 1.08997 * 109.46961 * 299.99491 * 23 21 19 43 43 H 1.07995 * 120.02857 * 0.02562 * 26 25 24 44 44 H 1.08003 * 119.97187 * 180.32325 * 27 26 25 45 45 H 1.07999 * 119.93766 * 179.69666 * 28 27 26 46 46 H 1.08000 * 119.97026 * 180.02562 * 29 28 27 47 47 H 1.08004 * 120.02618 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0265 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3550 7 6 4.3517 2.9802 -2.4156 8 1 5.2931 3.4841 -2.2532 9 6 3.8387 2.8653 -3.7003 10 7 2.6914 2.2513 -3.8983 11 14 4.7766 3.5821 -5.1481 12 1 5.7030 2.5577 -5.6938 13 1 3.8173 3.9946 -6.2040 14 1 5.5551 4.7637 -4.6975 15 6 4.0972 2.4945 0.0544 16 6 3.3817 1.2956 0.7255 17 1 3.9176 0.3655 0.5370 18 7 3.2165 1.5208 2.1637 19 6 4.2043 1.1837 3.0164 20 8 5.2301 0.6943 2.5931 21 6 4.0345 1.4159 4.4958 22 1 3.7899 2.4631 4.6735 23 6 2.9037 0.5311 5.0244 24 8 5.2505 1.0894 5.1717 25 6 5.4723 1.6936 6.3687 26 6 4.4939 2.4998 6.9320 27 6 4.7195 3.1078 8.1518 28 6 5.9240 2.9234 8.8052 29 6 6.9029 2.1250 8.2432 30 6 6.6799 1.5098 7.0265 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6128 2.4181 -1.8233 35 1 2.4706 0.8723 -2.0758 36 1 2.3332 2.1707 -4.7962 37 1 5.1787 2.3786 0.1247 38 1 3.7842 3.4305 0.5171 39 1 2.3962 1.9126 2.5022 40 1 3.1485 -0.5160 4.8466 41 1 2.7813 0.6988 6.0944 42 1 1.9763 0.7802 4.5088 43 1 3.5547 2.6478 6.4199 44 1 3.9561 3.7313 8.5933 45 1 6.1002 3.4035 9.7564 46 1 7.8427 1.9822 8.7557 47 1 7.4448 0.8859 6.5881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213803662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:46 Heat of formation + Delta-G solvation = -76.187015 kcal Electronic energy + Delta-G solvation = -28851.596834 eV Core-core repulsion = 24807.265294 eV Total energy + Delta-G solvation = -4044.331540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74835 -40.74979 -39.63336 -38.23234 -37.50028 -35.74315 -34.01495 -32.95628 -31.71435 -30.66365 -30.40709 -28.86443 -27.52182 -26.39414 -25.46140 -23.78903 -23.20794 -22.30236 -22.02965 -21.27795 -19.41028 -19.24731 -18.34553 -18.00223 -17.22334 -17.05982 -16.74264 -16.60431 -16.31047 -15.89157 -15.78520 -15.55748 -15.39096 -15.15291 -15.02271 -14.48491 -14.38539 -14.13139 -14.08726 -13.64358 -13.60181 -13.29402 -13.21140 -13.01154 -12.83901 -12.76821 -12.59883 -12.42607 -12.31715 -12.08698 -12.07761 -11.88390 -11.72569 -11.65616 -10.98615 -10.79137 -10.58804 -10.20283 -9.92215 -9.17135 -8.98985 -7.89484 -5.27557 0.41640 0.49647 1.42437 1.44371 1.47042 1.47999 1.55846 2.42742 2.51066 2.76247 2.87063 3.29638 3.40580 3.48568 3.68076 3.80010 3.88319 3.90890 3.95869 4.02962 4.07828 4.31270 4.34133 4.42694 4.44394 4.53871 4.60320 4.64882 4.66433 4.67199 4.78361 4.80043 4.90108 4.92768 5.10356 5.13136 5.29024 5.34418 5.37883 5.40983 5.50415 5.63108 5.64610 5.86253 6.11933 6.31351 6.33272 6.49649 7.03120 7.11444 7.67699 8.29837 9.19943 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002550 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.505145 B =10976.196780 C =12198.592946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.079 3.921 4 H 0.103 0.897 5 C 0.174 3.826 6 N -0.622 5.622 7 C -0.248 4.248 8 H 0.081 0.919 9 C -0.061 4.061 10 N -0.948 5.948 11 Si 0.981 3.019 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.130 3.870 16 C 0.152 3.848 17 H 0.071 0.929 18 N -0.691 5.691 19 C 0.514 3.486 20 O -0.570 6.570 21 C 0.074 3.926 22 H 0.129 0.871 23 C -0.169 4.169 24 O -0.318 6.318 25 C 0.105 3.895 26 C -0.215 4.215 27 C -0.082 4.082 28 C -0.162 4.162 29 C -0.084 4.084 30 C -0.176 4.176 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.025 0.975 35 H 0.017 0.983 36 H 0.249 0.751 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.420 0.580 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 1.355 27.392 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.020 3.980 4 H 0.121 0.879 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.376 4.376 8 H 0.099 0.901 9 C -0.255 4.255 10 N -0.596 5.596 11 Si 0.809 3.191 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.004 3.996 16 C 0.045 3.955 17 H 0.089 0.911 18 N -0.345 5.345 19 C 0.301 3.699 20 O -0.448 6.448 21 C 0.014 3.986 22 H 0.146 0.854 23 C -0.226 4.226 24 O -0.231 6.231 25 C 0.060 3.940 26 C -0.234 4.234 27 C -0.100 4.100 28 C -0.180 4.180 29 C -0.102 4.102 30 C -0.195 4.195 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.258 0.742 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.168 0.832 44 H 0.171 0.829 45 H 0.166 0.834 46 H 0.166 0.834 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.118 0.707 26.781 27.105 hybrid contribution 0.075 0.421 -1.454 1.515 sum -4.043 1.127 25.327 25.672 Atomic orbital electron populations 1.23015 0.79153 1.03933 1.00955 1.87904 1.21899 1.26856 1.94906 1.23461 0.93342 0.85466 0.95725 0.87917 1.21315 0.87066 0.94746 0.92093 1.44520 1.21993 1.66467 1.01992 1.19432 1.02841 1.29444 0.85927 0.90114 1.25670 0.98482 1.01396 0.99911 1.70153 1.20569 1.48246 1.20665 0.85050 0.77337 0.78070 0.78685 1.21550 1.21504 1.19265 1.21927 0.97135 0.95808 0.84766 1.21832 0.96039 0.98228 0.79354 0.91051 1.45488 1.19767 1.64021 1.05192 1.20798 0.83024 0.77355 0.88766 1.90750 1.29862 1.44521 1.79633 1.22306 0.85393 1.03389 0.87493 0.85406 1.22349 0.96668 0.99708 1.03858 1.86187 1.40603 1.64658 1.31697 1.19387 0.95371 0.93932 0.85264 1.21572 1.00295 1.02234 0.99258 1.21362 0.97798 0.97366 0.93433 1.21468 0.93991 1.00726 1.01860 1.21271 1.00331 0.95123 0.93454 1.20695 0.95953 1.05208 0.97630 0.88234 0.91242 0.94676 0.95685 0.96462 0.94136 0.95082 0.93716 0.74155 0.92356 0.88787 0.87423 0.83199 0.82903 0.83378 0.83382 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.85 113.37 1.23 1.84 16 2 O -0.40 -13.72 10.45 -148.98 -1.56 -15.27 16 3 C 0.08 2.84 3.05 31.78 0.10 2.94 16 4 H 0.10 2.89 7.68 -2.39 -0.02 2.87 16 5 C 0.17 8.59 5.16 86.73 0.45 9.04 16 6 N -0.62 -32.94 3.39 -691.96 -2.35 -35.29 16 7 C -0.25 -14.32 10.28 84.03 0.86 -13.45 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 9 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 10 N -0.95 -57.22 10.31 21.65 0.22 -57.00 16 11 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 C 0.13 5.66 6.93 86.86 0.60 6.26 16 16 C 0.15 5.63 3.04 46.38 0.14 5.77 16 17 H 0.07 3.18 7.73 -2.39 -0.02 3.16 16 18 N -0.69 -18.24 5.19 -435.96 -2.26 -20.50 16 19 C 0.51 15.44 7.18 87.66 0.63 16.07 16 20 O -0.57 -24.02 16.25 15.96 0.26 -23.76 16 21 C 0.07 1.54 2.64 29.85 0.08 1.61 16 22 H 0.13 1.85 6.31 -2.39 -0.02 1.83 16 23 C -0.17 -2.39 9.12 71.98 0.66 -1.73 16 24 O -0.32 -8.71 9.34 -73.55 -0.69 -9.40 16 25 C 0.11 2.36 6.60 22.51 0.15 2.51 16 26 C -0.22 -3.41 8.24 22.37 0.18 -3.22 16 27 C -0.08 -1.03 10.04 22.26 0.22 -0.80 16 28 C -0.16 -2.07 10.04 22.28 0.22 -1.85 16 29 C -0.08 -1.31 10.04 22.25 0.22 -1.09 16 30 C -0.18 -3.78 9.99 22.37 0.22 -3.56 16 31 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.07 1.21 8.11 -2.39 -0.02 1.19 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.03 1.34 7.53 -2.38 -0.02 1.32 16 35 H 0.02 1.00 7.28 -2.39 -0.02 0.98 16 36 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.42 7.08 8.30 -92.71 -0.77 6.31 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.00 6.90 -2.39 -0.02 0.99 16 42 H 0.11 0.91 7.92 -2.39 -0.02 0.89 16 43 H 0.15 1.60 5.43 -2.91 -0.02 1.59 16 44 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 46 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 47 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -81.99 386.75 2.30 -79.69 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.21 Total: 15.72 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.44 Total: 17.27 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -4.39 Total: -112.79 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -1.98 Total: -48.44 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -81.99 2.30 -79.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213803662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.503 kcal (2) G-P(sol) polarization free energy of solvation -81.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds