Wall clock time and date at job start Tue Mar 31 2020 17:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47366 * 2 1 4 4 C 1.52995 * 109.46759 * 120.00049 * 2 1 3 5 5 O 1.42904 * 109.47568 * 294.99901 * 4 2 1 6 6 C 1.35895 * 117.00381 * 180.02562 * 5 4 2 7 7 C 1.38735 * 120.05657 * 180.02562 * 6 5 4 8 8 C 1.38136 * 119.94328 * 179.97438 * 7 6 5 9 9 C 1.38268 * 120.06106 * 359.97111 * 8 7 6 10 10 C 1.38268 * 120.10557 * 0.05172 * 9 8 7 11 11 C 1.38141 * 120.05832 * 359.94854 * 10 9 8 12 12 C 1.50696 * 109.47213 * 239.99942 * 2 1 3 13 13 O 1.21283 * 120.00042 * 239.99748 * 12 2 1 14 14 N 1.34777 * 120.00326 * 60.00530 * 12 2 1 15 15 C 1.46497 * 120.00682 * 180.02562 * 14 12 2 16 16 H 1.09002 * 110.88361 * 34.29284 * 15 14 12 17 17 C 1.54913 * 111.00224 * 270.41649 * 15 14 12 18 18 N 1.47470 * 104.80963 * 204.94685 * 17 15 14 19 19 C 1.36938 * 125.62563 * 204.14372 * 18 17 15 20 20 H 1.08000 * 120.00112 * 354.79551 * 19 18 17 21 21 C 1.38815 * 119.99558 * 174.79240 * 19 18 17 22 22 N 1.31609 * 120.00355 * 7.06092 * 21 19 18 23 23 Si 1.86799 * 119.99791 * 187.06292 * 21 19 18 24 24 H 1.48501 * 109.47060 * 94.98321 * 23 21 19 25 25 H 1.48490 * 109.47382 * 214.99009 * 23 21 19 26 26 H 1.48508 * 109.46951 * 334.98861 * 23 21 19 27 27 C 1.47022 * 108.72249 * 24.06900 * 18 17 15 28 28 C 1.54323 * 107.27244 * 358.97485 * 27 18 17 29 29 H 1.09001 * 110.87196 * 219.37451 * 28 27 18 30 30 O 1.42899 * 110.71991 * 96.16988 * 28 27 18 31 31 H 1.09001 * 109.47058 * 60.00060 * 1 2 3 32 32 H 1.08999 * 109.46821 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47587 * 300.00115 * 1 2 3 34 34 H 1.09008 * 109.46802 * 175.00230 * 4 2 1 35 35 H 1.09004 * 109.47549 * 55.00564 * 4 2 1 36 36 H 1.08004 * 120.02575 * 359.70021 * 7 6 5 37 37 H 1.07999 * 119.97420 * 180.02562 * 8 7 6 38 38 H 1.07997 * 119.94953 * 180.02562 * 9 8 7 39 39 H 1.08007 * 119.96892 * 179.97438 * 10 9 8 40 40 H 1.08003 * 120.02867 * 180.02562 * 11 10 9 41 41 H 0.97008 * 119.99291 * 359.97438 * 14 12 2 42 42 H 1.09001 * 110.36611 * 323.75488 * 17 15 14 43 43 H 1.09001 * 110.36731 * 86.07321 * 17 15 14 44 44 H 0.96997 * 120.00333 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.88007 * 239.56185 * 27 18 17 46 46 H 1.08993 * 110.01012 * 118.46762 * 27 18 17 47 47 H 0.96695 * 114.00160 * 66.47619 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 0.0167 2.4131 6 6 2.0404 -0.4909 3.6155 7 6 1.7065 0.1738 4.7866 8 6 2.0920 -0.3446 6.0076 9 6 2.8095 -1.5252 6.0634 10 6 3.1439 -2.1893 4.8977 11 6 2.7608 -1.6751 3.6741 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7069 -0.2499 -2.4546 15 6 2.1947 -0.9408 -3.6508 16 1 2.2519 -2.0162 -3.4822 17 6 3.5658 -0.3753 -4.0982 18 7 3.6415 -0.6683 -5.5415 19 6 4.7938 -0.7908 -6.2712 20 1 5.7491 -0.5880 -5.8100 21 6 4.7339 -1.1757 -7.6035 22 7 3.5684 -1.2881 -8.2044 23 14 6.3077 -1.5344 -8.5437 24 1 6.5876 -2.9922 -8.5027 25 1 6.1513 -1.0998 -9.9549 26 1 7.4357 -0.7962 -7.9206 27 6 2.2756 -0.8089 -6.0668 28 6 1.3066 -0.6171 -4.8811 29 1 0.4702 -1.3129 -4.9467 30 8 0.8370 0.7313 -4.8249 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 3.1263 -0.7994 1.2056 35 1 1.6053 -1.7199 1.2951 36 1 1.1495 1.0981 4.7434 37 1 1.8320 0.1723 6.9195 38 1 3.1097 -1.9291 7.0190 39 1 3.7048 -3.1112 4.9438 40 1 3.0219 -2.1945 2.7639 41 1 1.1489 0.5386 -2.5435 42 1 3.6065 0.7005 -3.9272 43 1 4.3746 -0.8757 -3.5658 44 1 3.5266 -1.5567 -9.1355 45 1 2.1439 -1.8021 -6.4962 46 1 2.0878 -0.0493 -6.8256 47 1 0.2770 0.9842 -5.5715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220986975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:27 Heat of formation + Delta-G solvation = -71.656490 kcal Electronic energy + Delta-G solvation = -28355.680774 eV Core-core repulsion = 24311.545693 eV Total energy + Delta-G solvation = -4044.135082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.51839 -39.78945 -38.15075 -37.52319 -34.88577 -34.21208 -33.79635 -31.63250 -31.24492 -29.99378 -28.52138 -27.18435 -26.91744 -24.74386 -23.67684 -22.75887 -21.93358 -20.57295 -20.18476 -19.75734 -18.65047 -17.42398 -16.89628 -16.82831 -16.29470 -16.08498 -15.96557 -15.37223 -14.90809 -14.85617 -14.62360 -14.06172 -13.95337 -13.89174 -13.65027 -13.34607 -13.15872 -12.79533 -12.73008 -12.61741 -12.43314 -12.23660 -11.90609 -11.83925 -11.44795 -11.33698 -10.98287 -10.97537 -10.92338 -10.87865 -10.55125 -10.49545 -10.14472 -9.86245 -9.69489 -9.34776 -9.26450 -8.75236 -8.65395 -8.44210 -6.90214 -5.78794 -3.10568 1.08096 1.19733 2.68658 2.70680 3.38506 3.43986 3.45504 3.52927 3.54282 4.36685 4.45961 4.51869 4.60132 4.63151 4.67870 4.81606 4.88378 5.08470 5.11889 5.14901 5.24627 5.33179 5.35357 5.36435 5.43280 5.48964 5.56311 5.68429 5.70850 5.75239 5.83861 5.94240 6.03555 6.07055 6.16291 6.18071 6.27452 6.51983 6.54915 6.62759 6.88623 7.18125 7.29348 7.41190 7.68481 7.74175 8.02550 8.16856 8.35622 9.14948 9.75229 10.39897 11.33901 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.002119 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.049152 B =13208.769227 C =14227.900956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.109 0.891 4 C 0.079 3.921 5 O -0.315 6.315 6 C 0.135 3.865 7 C -0.155 4.155 8 C -0.083 4.083 9 C -0.163 4.163 10 C -0.080 4.080 11 C -0.208 4.208 12 C 0.519 3.481 13 O -0.544 6.544 14 N -0.702 5.702 15 C 0.138 3.862 16 H 0.104 0.896 17 C 0.131 3.869 18 N -0.600 5.600 19 C -0.225 4.225 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.924 5.924 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.154 3.846 28 C 0.068 3.932 29 H 0.061 0.939 30 O -0.568 6.568 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.408 0.592 42 H 0.026 0.974 43 H 0.045 0.955 44 H 0.253 0.747 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.332 2.745 23.152 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.127 0.873 4 C 0.004 3.996 5 O -0.228 6.228 6 C 0.089 3.911 7 C -0.174 4.174 8 C -0.102 4.102 9 C -0.181 4.181 10 C -0.098 4.098 11 C -0.227 4.227 12 C 0.304 3.696 13 O -0.422 6.422 14 N -0.353 5.353 15 C 0.033 3.967 16 H 0.122 0.878 17 C 0.004 3.996 18 N -0.327 5.327 19 C -0.353 4.353 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.028 3.972 28 C 0.008 3.992 29 H 0.079 0.921 30 O -0.374 6.374 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.244 0.756 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.529 2.162 23.477 25.072 hybrid contribution 0.387 -0.037 -1.329 1.385 sum -8.142 2.125 22.147 23.692 Atomic orbital electron populations 1.21760 0.92007 1.02954 1.03258 1.21160 0.98579 1.01699 0.91580 0.87313 1.22524 1.00602 0.94676 0.81820 1.85968 1.74189 1.50284 1.12402 1.19016 0.94149 0.92501 0.85427 1.20446 1.05119 1.01840 0.89977 1.20954 0.96733 0.95606 0.96862 1.21067 1.01914 0.96798 0.98341 1.20992 0.97758 0.99202 0.91852 1.21407 1.04035 0.97599 0.99626 1.20198 0.80280 0.84579 0.84566 1.90725 1.38101 1.26559 1.86816 1.45722 1.52778 1.32066 1.04755 1.22374 0.95091 0.97497 0.81765 0.87822 1.21846 0.93956 0.97232 0.86570 1.44288 1.02252 1.83937 1.02258 1.19093 0.84759 1.38976 0.92521 0.90245 1.24814 0.97190 1.01652 0.96787 1.69918 1.22214 1.53772 1.11318 0.86069 0.82283 0.78188 0.79087 1.21535 1.21764 1.20578 1.21862 0.82755 1.01561 0.91012 1.23507 0.95902 0.82875 0.96883 0.92098 1.86240 1.71326 1.29637 1.50221 0.91540 0.92060 0.90772 0.90781 0.91064 0.85262 0.85502 0.86039 0.85791 0.85068 0.75606 0.95670 0.93694 0.93696 0.92511 0.93048 0.77223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.99 37.16 0.33 -0.94 16 2 C -0.11 -1.18 2.96 -91.78 -0.27 -1.45 16 3 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.08 0.89 3.47 37.16 0.13 1.02 16 5 O -0.31 -3.53 9.67 -19.41 -0.19 -3.72 16 6 C 0.13 1.47 6.69 -39.22 -0.26 1.21 16 7 C -0.16 -1.46 9.99 -39.44 -0.39 -1.85 16 8 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 9 C -0.16 -1.32 10.04 -39.56 -0.40 -1.72 16 10 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 11 C -0.21 -2.17 9.04 -39.43 -0.36 -2.52 16 12 C 0.52 7.52 7.15 -10.99 -0.08 7.44 16 13 O -0.54 -9.88 15.61 5.56 0.09 -9.79 16 14 N -0.70 -10.26 5.07 -51.73 -0.26 -10.52 16 15 C 0.14 2.50 3.25 -65.78 -0.21 2.29 16 16 H 0.10 2.01 7.63 -51.93 -0.40 1.61 16 17 C 0.13 2.86 6.92 -2.50 -0.02 2.84 16 18 N -0.60 -15.36 3.40 -170.04 -0.58 -15.94 16 19 C -0.23 -6.33 10.26 -15.06 -0.15 -6.48 16 20 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 21 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 22 N -0.92 -26.62 10.36 55.49 0.57 -26.04 16 23 Si 0.91 22.14 29.56 -169.99 -5.02 17.11 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 C 0.15 3.55 5.15 -3.06 -0.02 3.53 16 28 C 0.07 1.19 4.20 -24.90 -0.10 1.09 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 O -0.57 -8.68 12.14 -35.23 -0.43 -9.10 16 31 H 0.07 0.53 7.56 -51.93 -0.39 0.14 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.61 7.82 -51.93 -0.41 0.21 16 34 H 0.07 0.89 7.47 -51.92 -0.39 0.50 16 35 H 0.07 0.80 7.66 -51.93 -0.40 0.41 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 41 H 0.41 5.22 6.99 -40.82 -0.29 4.94 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.06 1.45 7.30 -51.93 -0.38 1.07 16 46 H 0.05 1.30 7.54 -51.93 -0.39 0.90 16 47 H 0.38 4.46 9.12 45.56 0.42 4.87 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -32.95 385.28 -9.01 -41.96 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.30 Total: 8.30 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.69 Total: 1.94 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.26 Total: -52.50 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.53 Total: -22.62 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.95 -9.01 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220986975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.695 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds