Wall clock time and date at job start Tue Mar 31 2020 17:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47366 * 2 1 4 4 C 1.52995 * 109.46759 * 120.00049 * 2 1 3 5 5 O 1.42904 * 109.47568 * 294.99901 * 4 2 1 6 6 C 1.35895 * 117.00381 * 180.02562 * 5 4 2 7 7 C 1.38735 * 120.05657 * 180.02562 * 6 5 4 8 8 C 1.38136 * 119.94328 * 179.97438 * 7 6 5 9 9 C 1.38268 * 120.06106 * 359.97111 * 8 7 6 10 10 C 1.38268 * 120.10557 * 0.05172 * 9 8 7 11 11 C 1.38141 * 120.05832 * 359.94854 * 10 9 8 12 12 C 1.50696 * 109.47213 * 239.99942 * 2 1 3 13 13 O 1.21283 * 120.00042 * 239.99748 * 12 2 1 14 14 N 1.34777 * 120.00326 * 60.00530 * 12 2 1 15 15 C 1.46497 * 120.00682 * 180.02562 * 14 12 2 16 16 H 1.09002 * 110.88361 * 34.29284 * 15 14 12 17 17 C 1.54913 * 111.00224 * 270.41649 * 15 14 12 18 18 N 1.47470 * 104.80963 * 204.94685 * 17 15 14 19 19 C 1.36938 * 125.62563 * 204.14372 * 18 17 15 20 20 H 1.08000 * 120.00112 * 354.79551 * 19 18 17 21 21 C 1.38815 * 119.99558 * 174.79240 * 19 18 17 22 22 N 1.31609 * 120.00355 * 7.06092 * 21 19 18 23 23 Si 1.86799 * 119.99791 * 187.06292 * 21 19 18 24 24 H 1.48501 * 109.47060 * 94.98321 * 23 21 19 25 25 H 1.48490 * 109.47382 * 214.99009 * 23 21 19 26 26 H 1.48508 * 109.46951 * 334.98861 * 23 21 19 27 27 C 1.47022 * 108.72249 * 24.06900 * 18 17 15 28 28 C 1.54323 * 107.27244 * 358.97485 * 27 18 17 29 29 H 1.09001 * 110.87196 * 219.37451 * 28 27 18 30 30 O 1.42899 * 110.71991 * 96.16988 * 28 27 18 31 31 H 1.09001 * 109.47058 * 60.00060 * 1 2 3 32 32 H 1.08999 * 109.46821 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47587 * 300.00115 * 1 2 3 34 34 H 1.09008 * 109.46802 * 175.00230 * 4 2 1 35 35 H 1.09004 * 109.47549 * 55.00564 * 4 2 1 36 36 H 1.08004 * 120.02575 * 359.70021 * 7 6 5 37 37 H 1.07999 * 119.97420 * 180.02562 * 8 7 6 38 38 H 1.07997 * 119.94953 * 180.02562 * 9 8 7 39 39 H 1.08007 * 119.96892 * 179.97438 * 10 9 8 40 40 H 1.08003 * 120.02867 * 180.02562 * 11 10 9 41 41 H 0.97008 * 119.99291 * 359.97438 * 14 12 2 42 42 H 1.09001 * 110.36611 * 323.75488 * 17 15 14 43 43 H 1.09001 * 110.36731 * 86.07321 * 17 15 14 44 44 H 0.96997 * 120.00333 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.88007 * 239.56185 * 27 18 17 46 46 H 1.08993 * 110.01012 * 118.46762 * 27 18 17 47 47 H 0.96695 * 114.00160 * 66.47619 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 0.0167 2.4131 6 6 2.0404 -0.4909 3.6155 7 6 1.7065 0.1738 4.7866 8 6 2.0920 -0.3446 6.0076 9 6 2.8095 -1.5252 6.0634 10 6 3.1439 -2.1893 4.8977 11 6 2.7608 -1.6751 3.6741 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7069 -0.2499 -2.4546 15 6 2.1947 -0.9408 -3.6508 16 1 2.2519 -2.0162 -3.4822 17 6 3.5658 -0.3753 -4.0982 18 7 3.6415 -0.6683 -5.5415 19 6 4.7938 -0.7908 -6.2712 20 1 5.7491 -0.5880 -5.8100 21 6 4.7339 -1.1757 -7.6035 22 7 3.5684 -1.2881 -8.2044 23 14 6.3077 -1.5344 -8.5437 24 1 6.5876 -2.9922 -8.5027 25 1 6.1513 -1.0998 -9.9549 26 1 7.4357 -0.7962 -7.9206 27 6 2.2756 -0.8089 -6.0668 28 6 1.3066 -0.6171 -4.8811 29 1 0.4702 -1.3129 -4.9467 30 8 0.8370 0.7313 -4.8249 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 3.1263 -0.7994 1.2056 35 1 1.6053 -1.7199 1.2951 36 1 1.1495 1.0981 4.7434 37 1 1.8320 0.1723 6.9195 38 1 3.1097 -1.9291 7.0190 39 1 3.7048 -3.1112 4.9438 40 1 3.0219 -2.1945 2.7639 41 1 1.1489 0.5386 -2.5435 42 1 3.6065 0.7005 -3.9272 43 1 4.3746 -0.8757 -3.5658 44 1 3.5266 -1.5567 -9.1355 45 1 2.1439 -1.8021 -6.4962 46 1 2.0878 -0.0493 -6.8256 47 1 0.2770 0.9842 -5.5715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220986975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:26 Heat of formation + Delta-G solvation = -95.062672 kcal Electronic energy + Delta-G solvation = -28356.695742 eV Core-core repulsion = 24311.545693 eV Total energy + Delta-G solvation = -4045.150050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49272 -40.85616 -39.56751 -38.36335 -36.46699 -35.53023 -34.90999 -33.49040 -31.93234 -30.74941 -30.23721 -28.81827 -27.76934 -26.54834 -24.76200 -23.49291 -22.83078 -22.27640 -21.65277 -20.95878 -19.50548 -19.13769 -18.34892 -17.86133 -17.27912 -17.03505 -16.83110 -16.81430 -16.47465 -16.04235 -15.75352 -15.55087 -15.08442 -14.85346 -14.74182 -14.48052 -14.33502 -14.31692 -14.12783 -13.87347 -13.49408 -13.22984 -13.21052 -12.85614 -12.78717 -12.68662 -12.47093 -12.29543 -12.19175 -12.11208 -11.93915 -11.90640 -11.81424 -11.66974 -10.95559 -10.83569 -10.76412 -10.12188 -9.94556 -9.17490 -8.96457 -7.91934 -5.26346 0.39967 0.49645 1.43679 1.45997 1.51849 1.54654 1.70673 2.40043 2.51865 2.85681 3.16858 3.27938 3.45522 3.61448 3.76223 3.78944 3.89493 3.92886 3.94822 4.00906 4.21440 4.25732 4.29843 4.36299 4.48270 4.51444 4.52492 4.60521 4.65598 4.75067 4.81240 4.87301 4.95530 5.02164 5.10021 5.26235 5.35057 5.38116 5.41629 5.47643 5.50139 5.61452 5.63586 5.85968 6.12808 6.39267 6.53394 6.86980 7.04761 7.19041 7.68869 8.32714 9.18426 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.002119 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.049152 B =13208.769227 C =14227.900956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.126 0.874 4 C 0.085 3.915 5 O -0.317 6.317 6 C 0.109 3.891 7 C -0.164 4.164 8 C -0.083 4.083 9 C -0.163 4.163 10 C -0.090 4.090 11 C -0.226 4.226 12 C 0.519 3.481 13 O -0.583 6.583 14 N -0.690 5.690 15 C 0.152 3.848 16 H 0.091 0.909 17 C 0.131 3.869 18 N -0.622 5.622 19 C -0.248 4.248 20 H 0.076 0.924 21 C -0.060 4.060 22 N -0.945 5.945 23 Si 0.978 3.022 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.271 1.271 27 C 0.158 3.842 28 C 0.094 3.906 29 H 0.093 0.907 30 O -0.564 6.564 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.421 0.579 42 H 0.025 0.975 43 H 0.028 0.972 44 H 0.250 0.750 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 3.646 25.116 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 H 0.144 0.856 4 C 0.009 3.991 5 O -0.231 6.231 6 C 0.064 3.936 7 C -0.182 4.182 8 C -0.100 4.100 9 C -0.181 4.181 10 C -0.108 4.108 11 C -0.245 4.245 12 C 0.306 3.694 13 O -0.463 6.463 14 N -0.342 5.342 15 C 0.045 3.955 16 H 0.109 0.891 17 C 0.004 3.996 18 N -0.349 5.349 19 C -0.376 4.376 20 H 0.094 0.906 21 C -0.253 4.253 22 N -0.594 5.594 23 Si 0.806 3.194 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.196 1.196 27 C 0.033 3.967 28 C 0.033 3.967 29 H 0.111 0.889 30 O -0.372 6.372 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.159 0.841 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.259 0.741 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.629 3.103 25.467 27.403 hybrid contribution 0.748 -0.292 -1.848 2.015 sum -8.881 2.812 23.619 25.390 Atomic orbital electron populations 1.21761 0.90007 1.03133 1.04532 1.21106 1.00008 1.01642 0.89158 0.85630 1.22375 0.99658 0.94668 0.82399 1.85932 1.74427 1.50296 1.12464 1.19309 0.95344 0.93252 0.85692 1.20731 1.05229 1.02294 0.89955 1.21348 0.95750 0.95510 0.97420 1.21438 1.01056 0.96613 0.99012 1.21272 0.97871 0.99950 0.91744 1.21492 1.04913 0.97985 1.00106 1.20834 0.79225 0.83986 0.85306 1.90716 1.39816 1.28473 1.87340 1.45540 1.52677 1.32236 1.03755 1.21941 0.93228 0.96878 0.83487 0.89054 1.21900 0.95856 0.97033 0.84782 1.44569 1.02641 1.83840 1.03826 1.19392 0.85784 1.39229 0.93228 0.90643 1.25618 1.00308 1.01754 0.97629 1.70107 1.23838 1.54190 1.11245 0.85071 0.78964 0.77825 0.77534 1.21344 1.21617 1.19625 1.21732 0.83192 0.98923 0.92875 1.23116 0.95302 0.84757 0.93485 0.88928 1.86202 1.71632 1.28203 1.51198 0.90053 0.92462 0.89673 0.92321 0.91628 0.84078 0.82596 0.83521 0.84331 0.85936 0.74075 0.95683 0.95389 0.94063 0.95607 0.95667 0.75004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.99 71.98 0.65 -1.48 16 2 C -0.10 -1.99 2.96 -11.54 -0.03 -2.02 16 3 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 4 C 0.08 1.91 3.47 71.98 0.25 2.16 16 5 O -0.32 -6.96 9.67 -92.37 -0.89 -7.85 16 6 C 0.11 2.34 6.69 22.51 0.15 2.49 16 7 C -0.16 -2.84 9.99 22.36 0.22 -2.62 16 8 C -0.08 -1.13 10.04 22.25 0.22 -0.90 16 9 C -0.16 -2.29 10.04 22.28 0.22 -2.06 16 10 C -0.09 -1.55 10.04 22.25 0.22 -1.32 16 11 C -0.23 -4.77 9.04 22.36 0.20 -4.57 16 12 C 0.52 14.68 7.15 87.66 0.63 15.31 16 13 O -0.58 -21.49 15.61 -3.04 -0.05 -21.54 16 14 N -0.69 -19.15 5.07 -435.97 -2.21 -21.36 16 15 C 0.15 5.41 3.25 46.38 0.15 5.56 16 16 H 0.09 3.55 7.63 -2.39 -0.02 3.53 16 17 C 0.13 5.80 6.92 86.85 0.60 6.40 16 18 N -0.62 -32.61 3.40 -691.87 -2.35 -34.96 16 19 C -0.25 -14.25 10.26 84.03 0.86 -13.39 16 20 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 21 C -0.06 -3.40 5.48 84.86 0.46 -2.94 16 22 N -0.95 -55.66 10.36 21.65 0.22 -55.44 16 23 Si 0.98 46.13 29.56 68.60 2.03 48.16 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.16 7.44 5.15 86.73 0.45 7.89 16 28 C 0.09 3.15 4.20 31.78 0.13 3.28 16 29 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 30 O -0.56 -15.82 12.14 -148.98 -1.81 -17.63 16 31 H 0.08 1.03 7.56 -2.39 -0.02 1.02 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.18 7.82 -2.39 -0.02 1.16 16 34 H 0.06 1.48 7.47 -2.38 -0.02 1.46 16 35 H 0.07 1.52 7.66 -2.38 -0.02 1.50 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 38 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 39 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.12 2.67 6.30 -2.91 -0.02 2.65 16 41 H 0.42 9.63 6.99 -92.70 -0.65 8.99 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 45 H 0.03 1.36 7.30 -2.39 -0.02 1.34 16 46 H 0.03 1.30 7.54 -2.39 -0.02 1.28 16 47 H 0.40 8.27 9.12 -74.06 -0.68 7.59 16 Total: -1.00 -73.40 385.28 0.01 -73.39 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.33 Total: 25.44 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.40 Total: 11.79 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -4.33 Total: -111.75 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -2.75 Total: -47.02 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -73.40 0.01 -73.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220986975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.672 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds