Wall clock time and date at job start Tue Mar 31 2020 17:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47484 * 2 1 4 4 C 1.53001 * 109.46996 * 240.00375 * 2 1 3 5 5 N 1.46504 * 109.47159 * 64.99917 * 4 2 1 6 6 C 1.36940 * 119.99674 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99539 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00297 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99645 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47021 * 60.00248 * 10 8 6 12 12 H 1.48496 * 109.47121 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47470 * 300.00146 * 10 8 6 14 14 C 1.53004 * 109.47478 * 120.00173 * 2 1 3 15 15 N 1.46499 * 109.46717 * 294.99952 * 14 2 1 16 16 C 1.34776 * 119.99444 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00352 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99519 * 179.97438 * 16 15 14 19 19 C 1.53006 * 109.46546 * 179.97438 * 18 16 15 20 20 H 1.08992 * 109.74350 * 304.39555 * 19 18 16 21 21 C 1.53473 * 109.70404 * 183.79380 * 19 18 16 22 22 O 1.43178 * 108.23378 * 180.57522 * 21 19 18 23 23 C 1.36101 * 116.69852 * 46.25665 * 22 21 19 24 24 C 1.38702 * 119.39791 * 163.02663 * 23 22 21 25 25 C 1.38196 * 120.06979 * 180.02562 * 24 23 22 26 26 C 1.38255 * 120.11173 * 359.51950 * 25 24 23 27 27 C 1.38201 * 120.10919 * 0.33654 * 26 25 24 28 28 C 1.38700 * 120.07083 * 359.92437 * 27 26 25 29 29 O 1.36106 * 119.39948 * 179.81778 * 28 27 26 30 30 H 1.09002 * 109.46768 * 59.99671 * 1 2 3 31 31 H 1.09001 * 109.46768 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46839 * 300.00070 * 1 2 3 33 33 H 1.08999 * 109.47353 * 184.99923 * 4 2 1 34 34 H 1.08995 * 109.46916 * 304.99541 * 4 2 1 35 35 H 0.96995 * 119.99894 * 359.97438 * 5 4 2 36 36 H 0.97002 * 120.00224 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47256 * 175.00008 * 14 2 1 38 38 H 1.09000 * 109.46662 * 54.99644 * 14 2 1 39 39 H 0.97001 * 120.00272 * 359.97438 * 15 14 2 40 40 H 1.08999 * 109.47165 * 60.00215 * 18 16 15 41 41 H 1.09000 * 109.47273 * 299.99532 * 18 16 15 42 42 H 1.08997 * 109.71202 * 300.26454 * 21 19 18 43 43 H 1.09000 * 109.70748 * 60.88940 * 21 19 18 44 44 H 1.07998 * 119.96539 * 359.81600 * 24 23 22 45 45 H 1.08002 * 119.94846 * 179.80519 * 25 24 23 46 46 H 1.07992 * 119.94650 * 180.31475 * 26 25 24 47 47 H 1.08008 * 119.96288 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0010 -0.4207 -3.6856 7 1 2.5620 -1.3380 -3.7866 8 6 1.6333 0.2961 -4.8161 9 7 0.9492 1.4137 -4.6932 10 14 2.1095 -0.3258 -6.5120 11 1 1.5169 -1.6698 -6.7308 12 1 1.6009 0.6128 -7.5442 13 1 3.5886 -0.4152 -6.6093 14 6 2.0401 -0.7213 1.2492 15 7 1.6526 0.0353 2.4423 16 6 1.9958 -0.4137 3.6659 17 8 2.6258 -1.4438 3.7791 18 6 1.5976 0.3650 4.8932 19 6 2.1065 -0.3571 6.1425 20 1 1.7357 -1.3820 6.1521 21 6 1.6234 0.3799 7.3990 22 8 2.1274 -0.3128 8.5463 23 6 3.4410 -0.6679 8.5180 24 6 4.0790 -1.0115 9.7006 25 6 5.4126 -1.3737 9.6880 26 6 6.1118 -1.4042 8.4957 27 6 5.4813 -1.0659 7.3134 28 6 4.1445 -0.6962 7.3197 29 8 3.5381 -0.3621 6.1479 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7994 -1.2057 34 1 1.6054 -1.7197 -1.2952 35 1 1.1482 0.8592 -2.3517 36 1 0.6919 1.9143 -5.4832 37 1 3.1264 -0.7995 1.2055 38 1 1.6054 -1.7198 1.2951 39 1 1.1490 0.8594 2.3517 40 1 0.5114 0.4440 4.9368 41 1 2.0330 1.3632 4.8474 42 1 1.9995 1.4029 7.3927 43 1 0.5337 0.3884 7.4240 44 1 3.5339 -0.9927 10.6328 45 1 5.9083 -1.6379 10.6105 46 1 7.1525 -1.6926 8.4883 47 1 6.0299 -1.0901 6.3833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267987171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:44 Heat of formation + Delta-G solvation = -80.638212 kcal Electronic energy + Delta-G solvation = -27721.187892 eV Core-core repulsion = 23676.663334 eV Total energy + Delta-G solvation = -4044.524558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63129 -39.80619 -38.02515 -37.53689 -36.80847 -34.38218 -33.37197 -32.44410 -30.95646 -30.16075 -29.48793 -27.84315 -26.37301 -25.28805 -24.04578 -23.02154 -22.40197 -21.03973 -20.62535 -19.89983 -19.08200 -17.96092 -17.42858 -17.10642 -16.76555 -16.11719 -15.70257 -15.45887 -15.36777 -15.06778 -14.74064 -14.53890 -14.41129 -14.14818 -14.07437 -13.70123 -13.60298 -13.23608 -13.04197 -12.83490 -12.46984 -12.24344 -12.18498 -12.10392 -12.01482 -11.52967 -11.29818 -11.08266 -10.91657 -10.75551 -10.71224 -10.59298 -10.44934 -10.12776 -9.89677 -9.67216 -9.06586 -8.94064 -8.88380 -8.35096 -6.93704 -5.78190 -3.06613 0.99986 1.02597 2.51855 2.68894 2.83203 3.03033 3.43810 3.43930 3.48156 3.49247 3.83725 4.16083 4.28140 4.40509 4.58270 4.62026 4.70645 4.79775 4.81100 4.93996 4.98298 5.04837 5.12913 5.17573 5.19680 5.28767 5.35868 5.56398 5.56791 5.78452 5.84968 5.89691 5.93378 5.97748 6.08648 6.17373 6.21366 6.33207 6.36306 6.45132 6.61932 6.62690 6.75418 6.84703 7.14382 7.42043 7.69105 8.14146 8.40954 9.52216 10.09295 10.44191 11.44699 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028579 B = 0.001703 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.490305 B =16436.856565 C =17161.981654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.725 5.725 16 C 0.511 3.489 17 O -0.529 6.529 18 C -0.136 4.136 19 C 0.069 3.931 20 H 0.094 0.906 21 C 0.026 3.974 22 O -0.306 6.306 23 C 0.043 3.957 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.114 4.114 28 C 0.061 3.939 29 O -0.289 6.289 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -0.510 31.384 31.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.378 5.378 16 C 0.296 3.704 17 O -0.405 6.405 18 C -0.176 4.176 19 C 0.012 3.988 20 H 0.111 0.889 21 C -0.050 4.050 22 O -0.221 6.221 23 C -0.002 4.002 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.132 4.132 28 C 0.015 3.985 29 O -0.204 6.204 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.235 0.765 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.142 0.858 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.575 -1.343 31.269 31.404 hybrid contribution -0.350 0.488 -1.202 1.343 sum 2.226 -0.855 30.068 30.162 Atomic orbital electron populations 1.21791 0.94678 1.01918 1.01458 1.21553 0.96681 1.00498 0.94211 0.90542 1.20577 0.96637 0.94208 0.85391 1.42325 1.66942 1.27677 1.00567 1.19201 1.28773 1.05468 0.83675 0.91197 1.24732 1.00992 0.97399 0.97861 1.69642 1.43484 1.16608 1.28610 0.86250 0.78031 0.77702 0.84098 1.21270 1.21691 1.21262 1.21415 1.00183 0.95209 0.82850 1.46046 1.57849 1.27943 1.05921 1.20248 0.79828 0.85873 0.84431 1.90756 1.38950 1.24294 1.86493 1.21696 1.03382 1.01017 0.91534 1.22812 0.80316 1.01152 0.94521 0.88852 1.23693 1.01312 0.95672 0.84332 1.86301 1.22008 1.72898 1.40870 1.18945 0.84534 1.03204 0.93519 1.20422 0.94541 1.02575 0.95799 1.20905 0.93355 1.01219 0.98493 1.20944 1.00246 1.00538 0.91606 1.20527 0.92122 1.00876 0.99695 1.18986 0.93790 1.01550 0.84163 1.86414 1.19775 1.84304 1.29860 0.91141 0.92835 0.93943 0.96126 0.96014 0.78221 0.93488 0.91358 0.91373 0.76537 0.86381 0.87386 0.90294 0.85833 0.84962 0.85159 0.85091 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.94 37.16 0.33 -1.67 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.16 3.16 5.65 -4.04 -0.02 3.13 16 5 N -0.73 -18.19 5.33 -59.91 -0.32 -18.51 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 10 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.13 1.71 5.07 -4.04 -0.02 1.69 16 15 N -0.73 -7.78 5.28 -60.29 -0.32 -8.10 16 16 C 0.51 5.93 7.71 -10.98 -0.08 5.85 16 17 O -0.53 -8.56 15.44 -8.68 -0.13 -8.70 16 18 C -0.14 -0.97 5.44 -27.88 -0.15 -1.12 16 19 C 0.07 0.64 2.56 -26.48 -0.07 0.57 16 20 H 0.09 0.98 7.98 -51.93 -0.41 0.57 16 21 C 0.03 0.18 6.56 37.40 0.25 0.42 16 22 O -0.31 -3.07 10.42 -32.85 -0.34 -3.41 16 23 C 0.04 0.46 6.49 -39.14 -0.25 0.21 16 24 C -0.11 -1.02 9.96 -39.43 -0.39 -1.42 16 25 C -0.12 -0.93 10.04 -39.59 -0.40 -1.33 16 26 C -0.12 -0.95 10.04 -39.59 -0.40 -1.35 16 27 C -0.11 -1.19 9.96 -39.42 -0.39 -1.58 16 28 C 0.06 0.71 6.49 -39.14 -0.25 0.46 16 29 O -0.29 -3.59 9.31 -44.40 -0.41 -4.00 16 30 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.47 7.18 -51.93 -0.37 0.09 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 3.23 7.66 -40.82 -0.31 2.92 16 40 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -35.43 389.22 -9.51 -44.94 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.22 Total: 7.15 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.33 Total: -5.36 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.09 Total: -53.87 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.89 Total: -16.11 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.43 -9.51 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267987171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.702 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds