Wall clock time and date at job start Tue Mar 31 2020 17:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47484 * 2 1 4 4 C 1.53001 * 109.46996 * 240.00375 * 2 1 3 5 5 N 1.46504 * 109.47159 * 64.99917 * 4 2 1 6 6 C 1.36940 * 119.99674 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99539 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00297 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99645 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47021 * 60.00248 * 10 8 6 12 12 H 1.48496 * 109.47121 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47470 * 300.00146 * 10 8 6 14 14 C 1.53004 * 109.47478 * 120.00173 * 2 1 3 15 15 N 1.46499 * 109.46717 * 294.99952 * 14 2 1 16 16 C 1.34776 * 119.99444 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00352 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99519 * 179.97438 * 16 15 14 19 19 C 1.53006 * 109.46546 * 179.97438 * 18 16 15 20 20 H 1.08992 * 109.74350 * 304.39555 * 19 18 16 21 21 C 1.53473 * 109.70404 * 183.79380 * 19 18 16 22 22 O 1.43178 * 108.23378 * 180.57522 * 21 19 18 23 23 C 1.36101 * 116.69852 * 46.25665 * 22 21 19 24 24 C 1.38702 * 119.39791 * 163.02663 * 23 22 21 25 25 C 1.38196 * 120.06979 * 180.02562 * 24 23 22 26 26 C 1.38255 * 120.11173 * 359.51950 * 25 24 23 27 27 C 1.38201 * 120.10919 * 0.33654 * 26 25 24 28 28 C 1.38700 * 120.07083 * 359.92437 * 27 26 25 29 29 O 1.36106 * 119.39948 * 179.81778 * 28 27 26 30 30 H 1.09002 * 109.46768 * 59.99671 * 1 2 3 31 31 H 1.09001 * 109.46768 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46839 * 300.00070 * 1 2 3 33 33 H 1.08999 * 109.47353 * 184.99923 * 4 2 1 34 34 H 1.08995 * 109.46916 * 304.99541 * 4 2 1 35 35 H 0.96995 * 119.99894 * 359.97438 * 5 4 2 36 36 H 0.97002 * 120.00224 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47256 * 175.00008 * 14 2 1 38 38 H 1.09000 * 109.46662 * 54.99644 * 14 2 1 39 39 H 0.97001 * 120.00272 * 359.97438 * 15 14 2 40 40 H 1.08999 * 109.47165 * 60.00215 * 18 16 15 41 41 H 1.09000 * 109.47273 * 299.99532 * 18 16 15 42 42 H 1.08997 * 109.71202 * 300.26454 * 21 19 18 43 43 H 1.09000 * 109.70748 * 60.88940 * 21 19 18 44 44 H 1.07998 * 119.96539 * 359.81600 * 24 23 22 45 45 H 1.08002 * 119.94846 * 179.80519 * 25 24 23 46 46 H 1.07992 * 119.94650 * 180.31475 * 26 25 24 47 47 H 1.08008 * 119.96288 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0010 -0.4207 -3.6856 7 1 2.5620 -1.3380 -3.7866 8 6 1.6333 0.2961 -4.8161 9 7 0.9492 1.4137 -4.6932 10 14 2.1095 -0.3258 -6.5120 11 1 1.5169 -1.6698 -6.7308 12 1 1.6009 0.6128 -7.5442 13 1 3.5886 -0.4152 -6.6093 14 6 2.0401 -0.7213 1.2492 15 7 1.6526 0.0353 2.4423 16 6 1.9958 -0.4137 3.6659 17 8 2.6258 -1.4438 3.7791 18 6 1.5976 0.3650 4.8932 19 6 2.1065 -0.3571 6.1425 20 1 1.7357 -1.3820 6.1521 21 6 1.6234 0.3799 7.3990 22 8 2.1274 -0.3128 8.5463 23 6 3.4410 -0.6679 8.5180 24 6 4.0790 -1.0115 9.7006 25 6 5.4126 -1.3737 9.6880 26 6 6.1118 -1.4042 8.4957 27 6 5.4813 -1.0659 7.3134 28 6 4.1445 -0.6962 7.3197 29 8 3.5381 -0.3621 6.1479 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7994 -1.2057 34 1 1.6054 -1.7197 -1.2952 35 1 1.1482 0.8592 -2.3517 36 1 0.6919 1.9143 -5.4832 37 1 3.1264 -0.7995 1.2055 38 1 1.6054 -1.7198 1.2951 39 1 1.1490 0.8594 2.3517 40 1 0.5114 0.4440 4.9368 41 1 2.0330 1.3632 4.8474 42 1 1.9995 1.4029 7.3927 43 1 0.5337 0.3884 7.4240 44 1 3.5339 -0.9927 10.6328 45 1 5.9083 -1.6379 10.6105 46 1 7.1525 -1.6926 8.4883 47 1 6.0299 -1.0901 6.3833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267987171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:43 Heat of formation + Delta-G solvation = -104.535185 kcal Electronic energy + Delta-G solvation = -27722.224143 eV Core-core repulsion = 23676.663334 eV Total energy + Delta-G solvation = -4045.560809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31784 -40.75935 -38.73762 -38.33133 -38.06523 -35.95736 -34.27095 -33.82351 -31.91685 -31.62097 -30.24001 -28.60852 -27.63448 -26.77902 -24.97677 -24.11865 -23.65326 -21.80496 -21.55945 -21.11559 -19.85065 -19.20612 -18.59688 -18.00095 -17.73036 -17.20655 -16.62999 -16.51498 -16.15330 -16.05954 -15.90264 -15.52065 -15.49224 -15.30342 -15.05566 -14.83673 -14.74740 -14.40902 -14.16770 -13.89915 -13.63774 -13.56406 -13.01568 -12.94935 -12.80752 -12.76286 -12.71919 -12.22402 -12.18763 -12.13271 -11.99747 -11.94872 -11.71863 -11.66117 -11.44251 -10.94832 -10.89524 -10.08804 -9.63531 -9.06053 -9.00477 -7.96327 -5.24647 0.30412 0.33740 1.47055 1.49687 1.55870 1.65357 2.01982 2.12165 2.27319 2.56056 2.75259 3.20144 3.37086 3.52598 3.59458 3.72717 3.81010 3.95431 3.99099 4.08598 4.13780 4.25835 4.30188 4.35885 4.38843 4.43365 4.50552 4.54276 4.62807 4.69394 4.71423 4.78852 4.91196 4.93433 5.05102 5.11886 5.20096 5.23416 5.33395 5.42076 5.48461 5.49995 5.51858 5.72910 5.95193 6.26224 6.43738 6.57287 7.27764 7.33255 8.08079 8.33046 9.26693 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028579 B = 0.001703 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.490305 B =16436.856565 C =17161.981654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.251 4.251 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.280 1.280 14 C 0.139 3.861 15 N -0.714 5.714 16 C 0.506 3.494 17 O -0.582 6.582 18 C -0.124 4.124 19 C 0.062 3.938 20 H 0.070 0.930 21 C 0.027 3.973 22 O -0.319 6.319 23 C 0.027 3.973 24 C -0.122 4.122 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.137 4.137 28 C 0.032 3.968 29 O -0.317 6.317 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.016 0.984 34 H 0.020 0.980 35 H 0.377 0.623 36 H 0.252 0.748 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.417 0.583 40 H 0.164 0.836 41 H 0.131 0.869 42 H 0.091 0.909 43 H 0.160 0.840 44 H 0.150 0.850 45 H 0.163 0.837 46 H 0.156 0.844 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 0.006 33.308 33.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.097 0.903 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.383 4.383 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.206 1.206 14 C 0.014 3.986 15 N -0.367 5.367 16 C 0.294 3.706 17 O -0.461 6.461 18 C -0.163 4.163 19 C 0.005 3.995 20 H 0.088 0.912 21 C -0.048 4.048 22 O -0.234 6.234 23 C -0.018 4.018 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.155 4.155 28 C -0.013 4.013 29 O -0.232 6.232 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.210 0.790 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.254 0.746 40 H 0.181 0.819 41 H 0.149 0.851 42 H 0.109 0.891 43 H 0.177 0.823 44 H 0.168 0.832 45 H 0.181 0.819 46 H 0.174 0.826 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.107 -0.820 33.219 33.295 hybrid contribution -0.166 0.272 -1.733 1.762 sum 1.941 -0.548 31.486 31.550 Atomic orbital electron populations 1.21727 0.93613 1.01907 1.01959 1.21324 0.97339 0.99982 0.92572 0.90265 1.20731 0.96383 0.94175 0.85888 1.42479 1.66807 1.27820 1.01258 1.19593 1.28115 1.05396 0.85147 0.91004 1.25531 1.01601 0.97869 1.01468 1.69788 1.44867 1.17785 1.29214 0.85225 0.77849 0.77197 0.79553 1.20506 1.21890 1.20571 1.21066 0.99122 0.95059 0.83315 1.45881 1.57681 1.28196 1.04935 1.21069 0.78591 0.85397 0.85540 1.90742 1.41311 1.26852 1.87229 1.21788 1.06105 1.00567 0.87851 1.22978 0.79125 1.00701 0.96700 0.91186 1.23951 1.03200 0.95395 0.82219 1.86264 1.21676 1.73330 1.42145 1.19195 0.84991 1.03821 0.93772 1.20798 0.95283 1.02044 0.95946 1.21318 0.92942 0.99632 0.99473 1.21283 1.01420 0.99494 0.91040 1.20739 0.92233 1.02057 1.00499 1.19284 0.94474 1.02961 0.84561 1.86369 1.21546 1.84625 1.30659 0.93929 0.93115 0.90058 0.96584 0.96238 0.79009 0.93920 0.92887 0.92077 0.74557 0.81861 0.85125 0.89125 0.82264 0.83221 0.81920 0.82627 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.94 71.98 0.64 -3.00 16 2 C -0.09 -2.73 2.46 -10.79 -0.03 -2.75 16 3 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.16 6.18 5.65 86.38 0.49 6.67 16 5 N -0.74 -37.32 5.33 -343.45 -1.83 -39.15 16 6 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 7 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 8 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 9 N -0.97 -58.46 13.06 21.65 0.28 -58.17 16 10 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 14 C 0.14 3.67 5.07 86.38 0.44 4.11 16 15 N -0.71 -14.04 5.28 -463.05 -2.45 -16.49 16 16 C 0.51 11.22 7.71 87.66 0.68 11.89 16 17 O -0.58 -19.28 15.44 10.58 0.16 -19.12 16 18 C -0.12 -1.45 5.44 29.85 0.16 -1.28 16 19 C 0.06 1.10 2.56 30.76 0.08 1.17 16 20 H 0.07 1.52 7.98 -2.39 -0.02 1.50 16 21 C 0.03 0.33 6.56 72.14 0.47 0.80 16 22 O -0.32 -6.09 10.42 -82.47 -0.86 -6.95 16 23 C 0.03 0.58 6.49 22.56 0.15 0.72 16 24 C -0.12 -2.04 9.96 22.37 0.22 -1.81 16 25 C -0.12 -1.56 10.04 22.26 0.22 -1.34 16 26 C -0.11 -1.78 10.04 22.26 0.22 -1.56 16 27 C -0.14 -2.98 9.96 22.37 0.22 -2.75 16 28 C 0.03 0.78 6.49 22.56 0.15 0.93 16 29 O -0.32 -8.11 9.31 -71.49 -0.67 -8.77 16 30 H 0.04 1.40 7.18 -2.39 -0.02 1.39 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.55 7.18 -2.39 -0.02 1.53 16 33 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.38 19.78 6.85 -92.71 -0.63 19.15 16 36 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.42 5.41 7.66 -92.71 -0.71 4.70 16 40 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -80.22 389.22 1.74 -78.48 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.36 Total: 27.10 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.43 Total: -5.17 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -3.99 Total: -113.81 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.36 Total: -34.84 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -80.22 1.74 -78.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267987171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.053 kcal (2) G-P(sol) polarization free energy of solvation -80.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds