Wall clock time and date at job start Tue Mar 31 2020 17:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47099 * 2 1 4 4 C 1.52999 * 109.47615 * 240.00109 * 2 1 3 5 5 N 1.46498 * 109.46911 * 64.99433 * 4 2 1 6 6 C 1.36939 * 119.99599 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00649 * 0.02562 * 6 5 4 8 8 C 1.38820 * 119.99706 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00221 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99776 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47281 * 59.99832 * 10 8 6 12 12 H 1.48496 * 109.46677 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46767 * 299.99571 * 10 8 6 14 14 C 1.52998 * 109.47247 * 119.99810 * 2 1 3 15 15 N 1.46506 * 109.47237 * 295.00112 * 14 2 1 16 16 C 1.34773 * 119.99969 * 179.72043 * 15 14 2 17 17 O 1.21281 * 120.00220 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00080 * 180.02562 * 16 15 14 19 19 C 1.52992 * 109.47274 * 180.02562 * 18 16 15 20 20 H 1.08998 * 109.70836 * 54.99919 * 19 18 16 21 21 C 1.53464 * 109.70725 * 175.58023 * 19 18 16 22 22 O 1.43172 * 108.23902 * 179.38181 * 21 19 18 23 23 C 1.36104 * 116.72519 * 313.82077 * 22 21 19 24 24 C 1.38702 * 119.38893 * 197.14730 * 23 22 21 25 25 C 1.38205 * 120.06349 * 180.18640 * 24 23 22 26 26 C 1.38250 * 120.11180 * 359.97438 * 25 24 23 27 27 C 1.38199 * 120.11435 * 359.94363 * 26 25 24 28 28 C 1.38701 * 120.06585 * 0.02562 * 27 26 25 29 29 O 1.36106 * 119.39481 * 180.15369 * 28 27 26 30 30 H 1.08995 * 109.46959 * 60.00126 * 1 2 3 31 31 H 1.08997 * 109.46764 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47418 * 299.99897 * 1 2 3 33 33 H 1.08993 * 109.47340 * 185.00053 * 4 2 1 34 34 H 1.09004 * 109.46801 * 304.99991 * 4 2 1 35 35 H 0.97000 * 120.00151 * 0.02562 * 5 4 2 36 36 H 0.97000 * 120.00367 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47671 * 175.00452 * 14 2 1 38 38 H 1.08998 * 109.47454 * 55.00449 * 14 2 1 39 39 H 0.97005 * 119.99811 * 0.02562 * 15 14 2 40 40 H 1.09004 * 109.46762 * 300.00389 * 18 16 15 41 41 H 1.08998 * 109.46924 * 59.99727 * 18 16 15 42 42 H 1.08999 * 109.71384 * 299.12074 * 21 19 18 43 43 H 1.09009 * 109.71102 * 59.75352 * 21 19 18 44 44 H 1.07996 * 119.96834 * 0.16489 * 24 23 22 45 45 H 1.07999 * 119.94008 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.94228 * 179.97438 * 26 25 24 47 47 H 1.08003 * 119.96540 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 0.0354 -2.4423 6 6 2.0012 -0.4208 -3.6855 7 1 2.5616 -1.3384 -3.7865 8 6 1.6344 0.2964 -4.8161 9 7 0.9518 1.4150 -4.6931 10 14 2.1095 -0.3263 -6.5120 11 1 1.5151 -1.6694 -6.7306 12 1 1.6031 0.6137 -7.5440 13 1 3.5884 -0.4176 -6.6093 14 6 2.0400 -0.7212 1.2492 15 7 1.6525 0.0354 2.4424 16 6 1.9912 -0.4162 3.6662 17 8 2.6172 -1.4487 3.7798 18 6 1.5920 0.3619 4.8937 19 6 2.0967 -0.3626 6.1431 20 1 3.1716 -0.5251 6.0649 21 6 1.7900 0.4796 7.3889 22 8 2.2612 -0.2324 8.5382 23 6 1.9515 -1.5559 8.6078 24 6 2.0532 -2.2157 9.8236 25 6 1.7458 -3.5604 9.9094 26 6 1.3358 -4.2513 8.7843 27 6 1.2307 -3.5994 7.5702 28 6 1.5371 -2.2499 7.4774 29 8 1.4258 -1.6207 6.2756 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1264 -0.7994 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 1.1488 0.8594 -2.3517 36 1 0.6952 1.9159 -5.4831 37 1 3.1264 -0.7994 1.2057 38 1 1.6055 -1.7198 1.2952 39 1 1.1482 0.8592 2.3518 40 1 2.0303 1.3590 4.8502 41 1 0.5059 0.4439 4.9345 42 1 2.2985 1.4410 7.3171 43 1 0.7144 0.6371 7.4706 44 1 2.3732 -1.6782 10.7040 45 1 1.8261 -4.0723 10.8570 46 1 1.0967 -5.3022 8.8544 47 1 0.9098 -4.1414 6.6929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267987172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:46 Heat of formation + Delta-G solvation = -104.558710 kcal Electronic energy + Delta-G solvation = -27728.491952 eV Core-core repulsion = 23682.930123 eV Total energy + Delta-G solvation = -4045.561829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31569 -40.76078 -38.73616 -38.33091 -38.06541 -35.95661 -34.27143 -33.82434 -31.91704 -31.61958 -30.23927 -28.61143 -27.64029 -26.77879 -24.97649 -24.11700 -23.65202 -21.80659 -21.55562 -21.11728 -19.85416 -19.20640 -18.58548 -18.00655 -17.72988 -17.19379 -16.67029 -16.51040 -16.17541 -16.05529 -15.82078 -15.57962 -15.44743 -15.34201 -15.02292 -14.83735 -14.74155 -14.46038 -14.18235 -13.81309 -13.68535 -13.57112 -13.01610 -12.95390 -12.80620 -12.77590 -12.71021 -12.22480 -12.18398 -12.13311 -12.00009 -11.94714 -11.72251 -11.66170 -11.44374 -10.94657 -10.89820 -10.08873 -9.63367 -9.06023 -9.00285 -7.96187 -5.24463 0.30569 0.33823 1.47200 1.49815 1.55995 1.65242 2.01984 2.11784 2.27292 2.56190 2.75419 3.20099 3.37232 3.52569 3.59498 3.72748 3.80916 3.95409 3.98765 4.08242 4.13867 4.25802 4.30241 4.35875 4.38844 4.43461 4.50494 4.54083 4.62881 4.69921 4.70894 4.78509 4.91220 4.93088 5.04223 5.11685 5.20226 5.23485 5.33208 5.41367 5.48510 5.49632 5.51987 5.73047 5.95080 6.26351 6.43692 6.57143 7.27596 7.33415 8.08275 8.33216 9.26821 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032043 B = 0.001678 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.608729 B =16682.321998 C =17190.084863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.082 0.918 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.251 4.251 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.139 3.861 15 N -0.714 5.714 16 C 0.507 3.493 17 O -0.582 6.582 18 C -0.124 4.124 19 C 0.062 3.938 20 H 0.069 0.931 21 C 0.027 3.973 22 O -0.320 6.320 23 C 0.027 3.973 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.136 4.136 28 C 0.032 3.968 29 O -0.316 6.316 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.377 0.623 36 H 0.252 0.748 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.417 0.583 40 H 0.163 0.837 41 H 0.132 0.868 42 H 0.159 0.841 43 H 0.091 0.909 44 H 0.150 0.850 45 H 0.163 0.837 46 H 0.156 0.844 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 -1.753 33.458 33.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.100 0.900 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.383 4.383 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.616 5.616 10 Si 0.802 3.198 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.014 3.986 15 N -0.367 5.367 16 C 0.294 3.706 17 O -0.462 6.462 18 C -0.163 4.163 19 C 0.005 3.995 20 H 0.087 0.913 21 C -0.048 4.048 22 O -0.235 6.235 23 C -0.018 4.018 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.155 4.155 28 C -0.013 4.013 29 O -0.231 6.231 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.210 0.790 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.254 0.746 40 H 0.180 0.820 41 H 0.150 0.850 42 H 0.177 0.823 43 H 0.109 0.891 44 H 0.167 0.833 45 H 0.181 0.819 46 H 0.174 0.826 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.764 -2.536 33.365 33.470 hybrid contribution -0.078 0.327 -1.729 1.761 sum -0.842 -2.209 31.636 31.724 Atomic orbital electron populations 1.21726 0.93877 1.01770 1.01904 1.21320 0.97127 1.00122 0.92575 0.89962 1.20729 0.96461 0.94103 0.85872 1.42477 1.66836 1.27790 1.01253 1.19595 1.28155 1.05358 0.85154 0.91003 1.25531 1.01606 0.97857 1.01455 1.69787 1.44937 1.17712 1.29212 0.85226 0.77874 0.77170 0.79566 1.20561 1.21896 1.20522 1.21070 0.99297 0.94908 0.83306 1.45882 1.57756 1.28129 1.04917 1.21066 0.78618 0.85406 0.85497 1.90742 1.41947 1.26282 1.87197 1.21781 1.06229 1.00602 0.87701 1.22972 0.97068 0.83039 0.96417 0.91262 1.23948 1.02605 0.96108 0.82091 1.86261 1.74278 1.18401 1.44525 1.19197 1.04064 0.84316 0.94208 1.20802 1.02683 0.95571 0.95050 1.21319 0.98972 0.92988 1.00091 1.21285 0.99495 1.01348 0.91108 1.20739 1.03760 0.90840 1.00127 1.19284 1.04047 0.93568 0.84389 1.86373 1.70514 1.35655 1.30603 0.93850 0.93353 0.90231 0.96383 0.96415 0.79003 0.93922 0.92414 0.92526 0.74554 0.81990 0.84992 0.82340 0.89061 0.83259 0.81938 0.82599 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.94 71.98 0.64 -3.10 16 2 C -0.09 -2.70 2.46 -10.79 -0.03 -2.73 16 3 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 4 C 0.16 6.17 5.65 86.38 0.49 6.66 16 5 N -0.74 -37.23 5.33 -343.46 -1.83 -39.06 16 6 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 7 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 8 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 9 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 10 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 C 0.14 3.66 5.06 86.38 0.44 4.10 16 15 N -0.71 -14.03 5.28 -463.05 -2.45 -16.47 16 16 C 0.51 11.21 7.72 87.66 0.68 11.89 16 17 O -0.58 -19.28 15.46 9.92 0.15 -19.13 16 18 C -0.12 -1.45 5.43 29.85 0.16 -1.29 16 19 C 0.06 1.10 2.55 30.75 0.08 1.18 16 20 H 0.07 1.52 7.96 -2.39 -0.02 1.50 16 21 C 0.03 0.33 6.56 72.14 0.47 0.80 16 22 O -0.32 -6.12 10.42 -82.51 -0.86 -6.98 16 23 C 0.03 0.57 6.49 22.56 0.15 0.72 16 24 C -0.12 -2.04 9.96 22.37 0.22 -1.81 16 25 C -0.12 -1.55 10.04 22.26 0.22 -1.32 16 26 C -0.11 -1.76 10.04 22.26 0.22 -1.53 16 27 C -0.14 -2.92 9.96 22.37 0.22 -2.69 16 28 C 0.03 0.78 6.49 22.56 0.15 0.92 16 29 O -0.32 -8.01 9.36 -71.80 -0.67 -8.68 16 30 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.59 7.18 -2.39 -0.02 1.58 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.38 19.74 6.85 -92.71 -0.64 19.11 16 36 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.42 5.41 7.65 -92.70 -0.71 4.70 16 40 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 46 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -79.96 389.26 1.72 -78.24 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.36 Total: 27.14 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.43 Total: -5.15 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -3.99 Total: -113.63 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.38 Total: -34.79 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -79.96 1.72 -78.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267987172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.316 kcal (2) G-P(sol) polarization free energy of solvation -79.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds