Wall clock time and date at job start Tue Mar 31 2020 17:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47165 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.71084 * 305.58964 * 19 18 16 21 21 C 1.53478 * 109.71244 * 184.99903 * 19 18 16 22 22 O 1.43171 * 108.25262 * 180.57881 * 21 19 18 23 23 C 1.36107 * 116.71207 * 46.17829 * 22 21 19 24 24 C 1.38702 * 119.39966 * 162.82040 * 23 22 21 25 25 C 1.38199 * 120.06618 * 179.78830 * 24 23 22 26 26 C 1.38252 * 120.11739 * 0.06216 * 25 24 23 27 27 C 1.38198 * 120.10759 * 0.02562 * 26 25 24 28 28 C 1.38705 * 120.06653 * 359.97438 * 27 26 25 29 29 O 1.36113 * 119.38589 * 179.71928 * 28 27 26 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 32 32 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 34 34 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 38 38 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 39 39 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 40 40 H 1.08997 * 109.47244 * 299.99932 * 18 16 15 41 41 H 1.09004 * 109.47034 * 60.00271 * 18 16 15 42 42 H 1.09001 * 109.70453 * 300.27341 * 21 19 18 43 43 H 1.09002 * 109.70422 * 60.89031 * 21 19 18 44 44 H 1.07997 * 119.96542 * 359.83633 * 24 23 22 45 45 H 1.08006 * 119.94262 * 180.02562 * 25 24 23 46 46 H 1.08002 * 119.94646 * 180.02562 * 26 25 24 47 47 H 1.08000 * 119.96650 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 6 2.1084 -0.3554 -6.1424 20 1 3.1821 -0.5228 -6.0568 21 6 1.8145 0.4938 -7.3866 22 8 2.2923 -0.2140 -8.5358 23 6 1.9784 -1.5360 -8.6142 24 6 2.0865 -2.1904 -9.8324 25 6 1.7755 -3.5336 -9.9268 26 6 1.3548 -4.2285 -8.8081 27 6 1.2432 -3.5821 -7.5917 28 6 1.5537 -2.2341 -7.4901 29 8 1.4334 -1.6099 -6.2866 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2950 35 1 1.1483 0.8591 2.3518 36 1 0.6807 1.9070 5.4838 37 1 3.1264 -0.7994 -1.2056 38 1 1.6054 -1.7198 -1.2953 39 1 1.1483 0.8592 -2.3518 40 1 0.5110 0.4426 -4.9370 41 1 2.0313 1.3640 -4.8473 42 1 0.7404 0.6564 -7.4753 43 1 2.3266 1.4527 -7.3064 44 1 2.4147 -1.6498 -10.7078 45 1 1.8608 -4.0413 -10.8763 46 1 1.1129 -5.2783 -8.8849 47 1 0.9147 -4.1273 -6.7192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267987173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:50 Heat of formation + Delta-G solvation = -80.949191 kcal Electronic energy + Delta-G solvation = -27723.461002 eV Core-core repulsion = 23678.922959 eV Total energy + Delta-G solvation = -4044.538043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63412 -39.81128 -38.03008 -37.54035 -36.81267 -34.38789 -33.37414 -32.44739 -30.96243 -30.16388 -29.49264 -27.84511 -26.37150 -25.29330 -24.05019 -23.02850 -22.40806 -21.04341 -20.62681 -19.89847 -19.09415 -17.95716 -17.43569 -17.11130 -16.76878 -16.10594 -15.73119 -15.49338 -15.39601 -14.92611 -14.81379 -14.57458 -14.40964 -14.13977 -14.04062 -13.73234 -13.64172 -13.21813 -13.06032 -12.80687 -12.47312 -12.24928 -12.17929 -12.12933 -12.01328 -11.53106 -11.29920 -11.08369 -10.93790 -10.75845 -10.72779 -10.59208 -10.44321 -10.08159 -9.89504 -9.68388 -9.06984 -8.94687 -8.89828 -8.35811 -6.93987 -5.79015 -3.07326 0.99381 1.01929 2.51460 2.68668 2.82606 3.02758 3.42371 3.43182 3.48471 3.50486 3.83556 4.15942 4.27666 4.40579 4.57776 4.61852 4.70010 4.79767 4.80811 4.93703 4.97910 5.04907 5.12270 5.16596 5.19884 5.28683 5.35915 5.55916 5.56302 5.79083 5.84304 5.89043 5.94333 5.96461 6.08400 6.16686 6.21669 6.32595 6.36758 6.44896 6.61413 6.62787 6.75035 6.84549 7.13677 7.41625 7.69641 8.13666 8.40218 9.51628 10.08709 10.43505 11.44049 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.001676 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.382879 B =16700.216002 C =17203.839662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.127 3.873 15 N -0.725 5.725 16 C 0.511 3.489 17 O -0.530 6.530 18 C -0.136 4.136 19 C 0.069 3.931 20 H 0.094 0.906 21 C 0.026 3.974 22 O -0.306 6.306 23 C 0.043 3.957 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.114 4.114 28 C 0.060 3.940 29 O -0.290 6.290 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 -2.370 -31.641 31.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.377 5.377 16 C 0.296 3.704 17 O -0.406 6.406 18 C -0.176 4.176 19 C 0.012 3.988 20 H 0.112 0.888 21 C -0.050 4.050 22 O -0.221 6.221 23 C -0.002 4.002 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.132 4.132 28 C 0.015 3.985 29 O -0.204 6.204 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.235 0.765 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.097 0.903 43 H 0.142 0.858 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.388 -3.177 -31.529 31.691 hybrid contribution -0.212 0.598 1.218 1.374 sum -0.600 -2.579 -30.311 30.426 Atomic orbital electron populations 1.21793 0.94665 1.01962 1.01457 1.21551 0.96704 1.00459 0.94201 0.90548 1.20577 0.96625 0.94223 0.85389 1.42344 1.67046 1.27570 1.00576 1.19297 1.28564 1.05477 0.83628 0.91080 1.24737 1.01009 0.97438 0.97873 1.69668 1.43567 1.16725 1.28360 0.86104 0.77580 0.77856 0.84590 1.20538 1.21877 1.21870 1.21418 1.00104 0.95300 0.82848 1.46044 1.57823 1.27956 1.05917 1.20249 0.79876 0.85845 0.84401 1.90755 1.39395 1.23948 1.86459 1.21688 1.04568 0.99970 0.91398 1.22821 0.98350 0.83382 0.94271 0.88789 1.23694 1.01315 0.95774 0.84221 1.86302 1.73410 1.18839 1.43518 1.18945 1.03556 0.83808 0.93851 1.20428 1.03037 0.94894 0.94978 1.20906 1.00605 0.93373 0.99075 1.20943 1.00414 1.00161 0.91828 1.20523 1.02738 0.90816 0.99151 1.18985 1.02589 0.92887 0.84043 1.86416 1.69484 1.34525 1.30005 0.91144 0.93934 0.92819 0.96126 0.95994 0.78223 0.93591 0.91375 0.91345 0.76530 0.87382 0.86356 0.90301 0.85824 0.84952 0.85156 0.85092 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.94 37.16 0.33 -1.70 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.87 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 5 N -0.73 -18.16 5.33 -59.91 -0.32 -18.48 16 6 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 10 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 C 0.13 1.70 5.06 -4.04 -0.02 1.68 16 15 N -0.73 -7.77 5.28 -60.29 -0.32 -8.08 16 16 C 0.51 5.93 7.72 -10.99 -0.08 5.84 16 17 O -0.53 -8.56 15.47 -7.28 -0.11 -8.68 16 18 C -0.14 -0.97 5.43 -27.88 -0.15 -1.12 16 19 C 0.07 0.64 2.55 -26.48 -0.07 0.57 16 20 H 0.09 1.00 7.94 -51.93 -0.41 0.59 16 21 C 0.03 0.18 6.56 37.41 0.25 0.42 16 22 O -0.31 -3.06 10.42 -32.86 -0.34 -3.41 16 23 C 0.04 0.46 6.49 -39.14 -0.25 0.21 16 24 C -0.11 -1.02 9.96 -39.42 -0.39 -1.41 16 25 C -0.12 -0.92 10.04 -39.59 -0.40 -1.32 16 26 C -0.12 -0.94 10.04 -39.59 -0.40 -1.33 16 27 C -0.11 -1.17 9.96 -39.42 -0.39 -1.57 16 28 C 0.06 0.70 6.49 -39.14 -0.25 0.45 16 29 O -0.29 -3.57 9.40 -43.77 -0.41 -3.98 16 30 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 31 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 9.89 6.85 -40.82 -0.28 9.61 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.40 3.22 7.65 -40.82 -0.31 2.91 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 47 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -35.44 389.29 -9.48 -44.92 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.22 Total: 7.06 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.33 Total: -5.35 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.09 Total: -53.81 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.87 Total: -16.06 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.44 -9.48 -44.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267987173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.025 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds