Wall clock time and date at job start Tue Mar 31 2020 17:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47165 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.71084 * 305.58964 * 19 18 16 21 21 C 1.53478 * 109.71244 * 184.99903 * 19 18 16 22 22 O 1.43171 * 108.25262 * 180.57881 * 21 19 18 23 23 C 1.36107 * 116.71207 * 46.17829 * 22 21 19 24 24 C 1.38702 * 119.39966 * 162.82040 * 23 22 21 25 25 C 1.38199 * 120.06618 * 179.78830 * 24 23 22 26 26 C 1.38252 * 120.11739 * 0.06216 * 25 24 23 27 27 C 1.38198 * 120.10759 * 0.02562 * 26 25 24 28 28 C 1.38705 * 120.06653 * 359.97438 * 27 26 25 29 29 O 1.36113 * 119.38589 * 179.71928 * 28 27 26 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 32 32 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 34 34 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 38 38 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 39 39 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 40 40 H 1.08997 * 109.47244 * 299.99932 * 18 16 15 41 41 H 1.09004 * 109.47034 * 60.00271 * 18 16 15 42 42 H 1.09001 * 109.70453 * 300.27341 * 21 19 18 43 43 H 1.09002 * 109.70422 * 60.89031 * 21 19 18 44 44 H 1.07997 * 119.96542 * 359.83633 * 24 23 22 45 45 H 1.08006 * 119.94262 * 180.02562 * 25 24 23 46 46 H 1.08002 * 119.94646 * 180.02562 * 26 25 24 47 47 H 1.08000 * 119.96650 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 6 2.1084 -0.3554 -6.1424 20 1 3.1821 -0.5228 -6.0568 21 6 1.8145 0.4938 -7.3866 22 8 2.2923 -0.2140 -8.5358 23 6 1.9784 -1.5360 -8.6142 24 6 2.0865 -2.1904 -9.8324 25 6 1.7755 -3.5336 -9.9268 26 6 1.3548 -4.2285 -8.8081 27 6 1.2432 -3.5821 -7.5917 28 6 1.5537 -2.2341 -7.4901 29 8 1.4334 -1.6099 -6.2866 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1264 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2950 35 1 1.1483 0.8591 2.3518 36 1 0.6807 1.9070 5.4838 37 1 3.1264 -0.7994 -1.2056 38 1 1.6054 -1.7198 -1.2953 39 1 1.1483 0.8592 -2.3518 40 1 0.5110 0.4426 -4.9370 41 1 2.0313 1.3640 -4.8473 42 1 0.7404 0.6564 -7.4753 43 1 2.3266 1.4527 -7.3064 44 1 2.4147 -1.6498 -10.7078 45 1 1.8608 -4.0413 -10.8763 46 1 1.1129 -5.2783 -8.8849 47 1 0.9147 -4.1273 -6.7192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267987173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:49 Heat of formation + Delta-G solvation = -104.883195 kcal Electronic energy + Delta-G solvation = -27724.498858 eV Core-core repulsion = 23678.922959 eV Total energy + Delta-G solvation = -4045.575900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.31665 -40.76279 -38.73705 -38.33173 -38.06819 -35.96083 -34.27250 -33.82485 -31.91899 -31.62000 -30.24018 -28.61137 -27.64198 -26.78231 -24.97938 -24.12106 -23.65277 -21.80710 -21.55637 -21.11877 -19.85350 -19.21250 -18.58830 -18.00773 -17.73088 -17.19689 -16.67012 -16.51154 -16.17570 -16.05711 -15.81945 -15.58166 -15.46042 -15.34428 -15.01559 -14.83774 -14.74212 -14.46285 -14.18489 -13.81250 -13.69091 -13.57247 -13.01862 -12.95922 -12.83431 -12.80110 -12.71067 -12.19266 -12.14616 -12.12744 -12.00393 -11.94761 -11.71669 -11.66734 -11.44263 -10.96825 -10.90165 -10.08982 -9.63426 -9.06171 -9.00497 -7.96952 -5.25081 0.30548 0.33772 1.47244 1.47307 1.57693 1.65073 2.02141 2.11494 2.27379 2.55646 2.75356 3.20064 3.36915 3.52483 3.59486 3.72582 3.80929 3.95378 3.98769 4.08191 4.13842 4.25693 4.30203 4.35679 4.38866 4.43406 4.50423 4.54057 4.62807 4.69939 4.70865 4.78488 4.91216 4.93044 5.04209 5.11607 5.20189 5.23460 5.33178 5.41310 5.48675 5.49659 5.51965 5.73007 5.94996 6.26133 6.43546 6.56981 7.27429 7.33056 8.07809 8.32637 9.26562 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.001676 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.382879 B =16700.216002 C =17203.839662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.082 0.918 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.248 4.248 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.966 5.966 10 Si 0.972 3.028 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.139 3.861 15 N -0.714 5.714 16 C 0.507 3.493 17 O -0.582 6.582 18 C -0.124 4.124 19 C 0.062 3.938 20 H 0.069 0.931 21 C 0.027 3.973 22 O -0.320 6.320 23 C 0.027 3.973 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.136 4.136 28 C 0.032 3.968 29 O -0.316 6.316 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.377 0.623 36 H 0.252 0.748 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.417 0.583 40 H 0.132 0.868 41 H 0.163 0.837 42 H 0.091 0.909 43 H 0.159 0.841 44 H 0.150 0.850 45 H 0.163 0.837 46 H 0.156 0.844 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 -1.772 -33.540 33.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.100 0.900 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.194 1.194 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.014 3.986 15 N -0.367 5.367 16 C 0.294 3.706 17 O -0.462 6.462 18 C -0.163 4.163 19 C 0.005 3.995 20 H 0.087 0.913 21 C -0.048 4.048 22 O -0.235 6.235 23 C -0.018 4.018 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.155 4.155 28 C -0.013 4.013 29 O -0.232 6.232 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.210 0.790 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.254 0.746 40 H 0.150 0.850 41 H 0.180 0.820 42 H 0.110 0.890 43 H 0.176 0.824 44 H 0.167 0.833 45 H 0.181 0.819 46 H 0.174 0.826 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.659 -2.569 -33.454 33.559 hybrid contribution -0.102 0.351 1.741 1.779 sum -0.760 -2.218 -31.713 31.800 Atomic orbital electron populations 1.21730 0.93881 1.01774 1.01901 1.21322 0.97125 1.00127 0.92576 0.89954 1.20731 0.96486 0.94097 0.85859 1.42497 1.66904 1.27712 1.01261 1.19668 1.27862 1.05347 0.85100 0.90964 1.25528 1.01630 0.97922 1.01447 1.69805 1.44954 1.17917 1.29038 0.85089 0.77109 0.77592 0.80051 1.19366 1.21883 1.21915 1.21071 0.99302 0.94910 0.83301 1.45879 1.57652 1.28206 1.04936 1.21065 0.78636 0.85378 0.85502 1.90742 1.41801 1.26459 1.87195 1.21778 1.06191 1.00644 0.87696 1.22973 0.97020 0.83128 0.96379 0.91272 1.23949 1.02600 0.96106 0.82107 1.86264 1.73840 1.18621 1.44735 1.19198 1.04011 0.84338 0.94235 1.20801 1.02689 0.95641 0.94977 1.21319 0.98933 0.92968 1.00145 1.21286 0.99471 1.01355 0.91123 1.20741 1.03737 0.90886 1.00094 1.19285 1.04021 0.93608 0.84384 1.86371 1.70050 1.36051 1.30694 0.93856 0.90234 0.93343 0.96348 0.96400 0.79002 0.93934 0.92412 0.92512 0.74550 0.84989 0.81984 0.89039 0.82365 0.83261 0.81936 0.82591 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.94 71.98 0.64 -3.10 16 2 C -0.09 -2.70 2.46 -10.79 -0.03 -2.72 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.15 5.65 86.38 0.49 6.64 16 5 N -0.74 -37.19 5.33 -343.46 -1.83 -39.02 16 6 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 9 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 10 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 14 C 0.14 3.65 5.06 86.38 0.44 4.09 16 15 N -0.71 -13.99 5.28 -463.06 -2.45 -16.44 16 16 C 0.51 11.20 7.72 87.66 0.68 11.88 16 17 O -0.58 -19.27 15.47 9.24 0.14 -19.13 16 18 C -0.12 -1.45 5.43 29.85 0.16 -1.29 16 19 C 0.06 1.10 2.55 30.75 0.08 1.18 16 20 H 0.07 1.53 7.94 -2.39 -0.02 1.51 16 21 C 0.03 0.33 6.56 72.14 0.47 0.80 16 22 O -0.32 -6.12 10.42 -82.55 -0.86 -6.98 16 23 C 0.03 0.57 6.49 22.56 0.15 0.72 16 24 C -0.12 -2.03 9.96 22.37 0.22 -1.81 16 25 C -0.12 -1.54 10.04 22.26 0.22 -1.32 16 26 C -0.11 -1.75 10.04 22.26 0.22 -1.53 16 27 C -0.14 -2.91 9.96 22.37 0.22 -2.68 16 28 C 0.03 0.77 6.49 22.56 0.15 0.92 16 29 O -0.32 -8.00 9.40 -72.20 -0.68 -8.68 16 30 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 31 H 0.08 1.59 7.18 -2.39 -0.02 1.57 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.38 19.72 6.85 -92.71 -0.63 19.09 16 36 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.06 1.65 8.14 -2.38 -0.02 1.64 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.42 5.39 7.65 -92.71 -0.71 4.68 16 40 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.16 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 47 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -80.05 389.29 1.70 -78.34 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -0.36 Total: 26.85 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 5.43 Total: -5.04 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.99 Total: -113.61 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.40 Total: -34.78 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -80.05 1.70 -78.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267987173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.541 kcal (2) G-P(sol) polarization free energy of solvation -80.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds