Wall clock time and date at job start Tue Mar 31 2020 17:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47090 * 2 1 4 4 C 1.53000 * 109.47517 * 119.99461 * 2 1 3 5 5 N 1.46506 * 109.47108 * 295.00670 * 4 2 1 6 6 C 1.36935 * 119.99911 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00151 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99846 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99892 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46627 * 90.00291 * 10 8 6 12 12 H 1.48501 * 109.47183 * 210.00091 * 10 8 6 13 13 H 1.48502 * 109.47020 * 330.00546 * 10 8 6 14 14 C 1.52997 * 109.47260 * 239.99743 * 2 1 3 15 15 N 1.46496 * 109.47194 * 64.99617 * 14 2 1 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 2 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 H 1.08992 * 109.70708 * 54.99751 * 19 18 16 21 21 C 1.53467 * 109.70405 * 175.58325 * 19 18 16 22 22 O 1.43176 * 108.23655 * 179.38449 * 21 19 18 23 23 C 1.36107 * 116.72407 * 313.81689 * 22 21 19 24 24 C 1.38701 * 119.39089 * 197.15101 * 23 22 21 25 25 C 1.38194 * 120.06694 * 180.18707 * 24 23 22 26 26 C 1.38253 * 120.10870 * 359.97438 * 25 24 23 27 27 C 1.38187 * 120.11912 * 359.95042 * 26 25 24 28 28 C 1.38713 * 120.06790 * 0.02562 * 27 26 25 29 29 O 1.36102 * 119.40049 * 180.15986 * 28 27 26 30 30 H 1.09001 * 109.47254 * 60.00390 * 1 2 3 31 31 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47094 * 300.00305 * 1 2 3 33 33 H 1.09001 * 109.46604 * 54.99696 * 4 2 1 34 34 H 1.08993 * 109.47585 * 175.00310 * 4 2 1 35 35 H 0.96999 * 119.99735 * 359.97438 * 5 4 2 36 36 H 0.97001 * 119.99955 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47045 * 304.99744 * 14 2 1 38 38 H 1.09001 * 109.47375 * 184.99669 * 14 2 1 39 39 H 0.97005 * 120.00266 * 0.02562 * 15 14 2 40 40 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 41 41 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 42 42 H 1.09002 * 109.71002 * 299.11685 * 21 19 18 43 43 H 1.09003 * 109.71856 * 59.75363 * 21 19 18 44 44 H 1.08007 * 119.96625 * 0.16055 * 24 23 22 45 45 H 1.07997 * 119.94269 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.93744 * 179.97438 * 26 25 24 47 47 H 1.08003 * 119.97113 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.0011 -0.4205 3.6856 7 1 2.5616 -1.3382 3.7866 8 6 1.6343 0.2967 4.8160 9 7 0.9508 1.4148 4.6931 10 14 2.1093 -0.3258 6.5121 11 1 3.4323 0.2321 6.8914 12 1 1.0886 0.1045 7.5011 13 1 2.1848 -1.8088 6.4918 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0352 -2.4423 16 6 1.9964 -0.4133 -3.6659 17 8 2.6265 -1.4433 -3.7791 18 6 1.5982 0.3652 -4.8932 19 6 2.1081 -0.3562 -6.1424 20 1 1.7466 -1.3844 -6.1464 21 6 1.6120 0.3718 -7.3991 22 8 2.1180 -0.3194 -8.5464 23 6 3.4349 -0.6625 -8.5227 24 6 4.0718 -0.9999 -9.7077 25 6 5.4075 -1.3542 -9.6993 26 6 6.1126 -1.3730 -8.5102 27 6 5.4845 -1.0365 -7.3263 28 6 4.1441 -0.6794 -7.3277 29 8 3.5399 -0.3473 -6.1542 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7196 1.2953 34 1 3.1264 -0.7993 1.2057 35 1 1.1488 0.8595 2.3517 36 1 0.6942 1.9157 5.4830 37 1 1.6054 -1.7199 -1.2950 38 1 3.1264 -0.7995 -1.2056 39 1 1.1488 0.8593 -2.3518 40 1 2.0328 1.3638 -4.8470 41 1 0.5119 0.4435 -4.9372 42 1 0.5222 0.3698 -7.4189 43 1 1.9784 1.3984 -7.3982 44 1 3.5232 -0.9860 -10.6380 45 1 5.9013 -1.6169 -10.6232 46 1 7.1562 -1.6508 -8.5068 47 1 6.0376 -1.0516 -6.3988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267987174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:52 Heat of formation + Delta-G solvation = -104.723258 kcal Electronic energy + Delta-G solvation = -27718.560143 eV Core-core repulsion = 23672.991178 eV Total energy + Delta-G solvation = -4045.568964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31677 -40.76154 -38.73806 -38.33135 -38.06687 -35.96003 -34.27218 -33.82516 -31.91826 -31.62141 -30.24063 -28.60890 -27.63548 -26.78105 -24.97827 -24.12033 -23.65385 -21.80478 -21.55964 -21.11636 -19.85111 -19.20966 -18.59763 -18.00120 -17.73076 -17.20860 -16.63060 -16.51608 -16.15670 -16.05827 -15.90254 -15.52417 -15.49527 -15.30489 -15.05180 -14.83644 -14.74914 -14.40888 -14.16977 -13.89920 -13.63835 -13.56595 -13.01935 -12.94737 -12.82398 -12.78218 -12.71981 -12.19273 -12.17432 -12.13114 -12.00364 -11.94760 -11.71679 -11.66362 -11.44428 -10.95837 -10.89883 -10.08901 -9.63562 -9.06128 -9.00604 -7.96697 -5.24925 0.30423 0.33671 1.47012 1.48280 1.56835 1.65193 2.02013 2.11803 2.27266 2.55750 2.75266 3.20108 3.36943 3.52504 3.59396 3.72649 3.80993 3.95405 3.99095 4.08582 4.13736 4.25715 4.30246 4.35795 4.38812 4.43303 4.50476 4.54257 4.62805 4.69370 4.71384 4.78818 4.91181 4.93411 5.05115 5.11888 5.20065 5.23388 5.33358 5.42074 5.48559 5.50013 5.51855 5.72902 5.95065 6.26077 6.43657 6.57109 7.27588 7.33081 8.07839 8.32767 9.26564 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028623 B = 0.001702 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.984942 B =16451.171356 C =17172.550819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.249 4.249 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.966 5.966 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.272 1.272 14 C 0.139 3.861 15 N -0.714 5.714 16 C 0.507 3.493 17 O -0.582 6.582 18 C -0.124 4.124 19 C 0.062 3.938 20 H 0.070 0.930 21 C 0.027 3.973 22 O -0.319 6.319 23 C 0.027 3.973 24 C -0.122 4.122 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.137 4.137 28 C 0.032 3.968 29 O -0.317 6.317 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.020 0.980 34 H 0.016 0.984 35 H 0.377 0.623 36 H 0.252 0.748 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.417 0.583 40 H 0.131 0.869 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.091 0.909 44 H 0.150 0.850 45 H 0.163 0.837 46 H 0.156 0.844 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -0.026 -33.351 33.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.097 0.903 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.381 4.381 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.219 1.219 13 H -0.197 1.197 14 C 0.014 3.986 15 N -0.367 5.367 16 C 0.294 3.706 17 O -0.462 6.462 18 C -0.163 4.163 19 C 0.005 3.995 20 H 0.088 0.912 21 C -0.048 4.048 22 O -0.234 6.234 23 C -0.018 4.018 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.155 4.155 28 C -0.013 4.013 29 O -0.232 6.232 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.034 0.966 35 H 0.210 0.790 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.254 0.746 40 H 0.149 0.851 41 H 0.181 0.819 42 H 0.177 0.823 43 H 0.109 0.891 44 H 0.168 0.832 45 H 0.181 0.819 46 H 0.174 0.826 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.079 -0.864 -33.265 33.341 hybrid contribution -0.157 0.296 1.739 1.771 sum 1.922 -0.568 -31.526 31.589 Atomic orbital electron populations 1.21727 0.93609 1.01912 1.01960 1.21322 0.97344 0.99981 0.92572 0.90268 1.20733 0.96389 0.94180 0.85880 1.42488 1.66806 1.27806 1.01270 1.19628 1.28006 1.05338 0.85137 0.90987 1.25530 1.01623 0.97891 1.01459 1.69796 1.44945 1.17805 1.29135 0.85157 0.76995 0.77914 0.79777 1.21429 1.21939 1.19690 1.21066 0.99124 0.95064 0.83311 1.45881 1.57651 1.28216 1.04937 1.21068 0.78585 0.85391 0.85544 1.90741 1.41335 1.26857 1.87231 1.21785 1.06097 1.00581 0.87854 1.22979 0.79095 1.00741 0.96693 0.91181 1.23951 1.03102 0.95500 0.82199 1.86262 1.21342 1.73564 1.42266 1.19196 0.84848 1.03936 0.93791 1.20802 0.95301 1.02080 0.95889 1.21317 0.92904 0.99634 0.99510 1.21280 1.01429 0.99479 0.91046 1.20740 0.92168 1.02129 1.00486 1.19286 0.94425 1.03022 0.84551 1.86372 1.21607 1.84562 1.30681 0.90054 0.93109 0.93934 0.96223 0.96568 0.79009 0.93927 0.92068 0.92885 0.74556 0.85129 0.81853 0.82263 0.89124 0.83220 0.81922 0.82622 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 8.94 71.98 0.64 -2.99 16 2 C -0.09 -2.72 2.46 -10.79 -0.03 -2.75 16 3 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.16 6.17 5.65 86.38 0.49 6.66 16 5 N -0.74 -37.29 5.33 -343.44 -1.83 -39.13 16 6 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 7 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 8 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 9 N -0.97 -58.48 13.06 21.65 0.28 -58.19 16 10 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 C 0.14 3.66 5.06 86.38 0.44 4.10 16 15 N -0.71 -14.02 5.28 -463.07 -2.45 -16.47 16 16 C 0.51 11.21 7.72 87.66 0.68 11.89 16 17 O -0.58 -19.28 15.46 9.95 0.15 -19.12 16 18 C -0.12 -1.45 5.43 29.85 0.16 -1.29 16 19 C 0.06 1.10 2.55 30.75 0.08 1.17 16 20 H 0.07 1.53 7.96 -2.39 -0.02 1.51 16 21 C 0.03 0.33 6.56 72.14 0.47 0.80 16 22 O -0.32 -6.10 10.42 -82.55 -0.86 -6.96 16 23 C 0.03 0.58 6.49 22.56 0.15 0.73 16 24 C -0.12 -2.03 9.96 22.37 0.22 -1.81 16 25 C -0.12 -1.56 10.04 22.26 0.22 -1.34 16 26 C -0.11 -1.78 10.04 22.26 0.22 -1.56 16 27 C -0.14 -2.97 9.96 22.37 0.22 -2.74 16 28 C 0.03 0.78 6.49 22.56 0.15 0.93 16 29 O -0.32 -8.10 9.36 -71.76 -0.67 -8.77 16 30 H 0.08 1.54 7.18 -2.39 -0.02 1.53 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.40 7.18 -2.38 -0.02 1.38 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.38 19.77 6.85 -92.71 -0.64 19.14 16 36 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.42 5.40 7.66 -92.70 -0.71 4.69 16 40 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 47 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -80.25 389.26 1.72 -78.53 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.36 Total: 26.94 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.43 Total: -5.10 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -3.99 Total: -113.79 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.38 Total: -34.85 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -80.25 1.72 -78.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267987174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.190 kcal (2) G-P(sol) polarization free energy of solvation -80.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds