Wall clock time and date at job start Tue Mar 31 2020 17:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21588 * 119.99783 * 359.97438 * 16 15 14 18 18 C 1.47609 * 120.00288 * 179.97438 * 16 15 14 19 19 C 1.39699 * 120.04768 * 359.97438 * 18 16 15 20 20 C 1.37869 * 120.07844 * 179.97438 * 19 18 16 21 21 C 1.38779 * 119.91128 * 0.03436 * 20 19 18 22 22 C 1.39022 * 120.28995 * 359.97438 * 21 20 19 23 23 C 1.38050 * 120.21971 * 359.70233 * 22 21 20 24 24 O 1.36504 * 119.58914 * 179.97438 * 22 21 20 25 25 C 1.42895 * 115.93206 * 68.28549 * 24 22 21 26 26 C 1.52062 * 110.76832 * 275.59339 * 25 24 22 27 27 C 1.52061 * 112.36553 * 64.81485 * 26 25 24 28 28 O 1.36321 * 120.15454 * 179.97438 * 21 20 19 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 32 32 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 39 39 H 1.08002 * 119.96486 * 0.02562 * 19 18 16 40 40 H 1.08000 * 120.04441 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.20362 * 180.31482 * 23 22 21 42 42 H 1.09005 * 109.22020 * 35.92876 * 25 24 22 43 43 H 1.09006 * 109.21596 * 155.26194 * 25 24 22 44 44 H 1.09007 * 108.90432 * 185.55137 * 26 25 24 45 45 H 1.08998 * 108.90659 * 304.16411 * 26 25 24 46 46 H 1.09002 * 109.21654 * 55.49988 * 27 26 25 47 47 H 1.08998 * 109.21447 * 174.82468 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6288 -1.4452 -3.7795 18 6 1.6055 0.3491 -4.8681 19 6 0.8785 1.5350 -4.7388 20 6 0.5135 2.2476 -5.8613 21 6 0.8686 1.7849 -7.1205 22 6 1.5919 0.6054 -7.2559 23 6 1.9677 -0.1115 -6.1376 24 8 1.9332 0.1632 -8.5015 25 6 2.8920 0.9555 -9.2049 26 6 2.2135 2.1115 -9.9230 27 6 1.5775 3.0992 -8.9575 28 8 0.5099 2.4852 -8.2337 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 0.6807 1.9070 5.4838 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 0.6027 1.8946 -3.7585 40 1 -0.0482 3.1645 -5.7607 41 1 2.5339 -1.0251 -6.2429 42 1 3.6199 1.3509 -8.4963 43 1 3.4063 0.3313 -9.9357 44 1 2.9542 2.6355 -10.5272 45 1 1.4398 1.7139 -10.5799 46 1 2.3326 3.4498 -8.2538 47 1 1.1886 3.9491 -9.5182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270420653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:30 Heat of formation + Delta-G solvation = -77.805276 kcal Electronic energy + Delta-G solvation = -27824.516044 eV Core-core repulsion = 23780.114331 eV Total energy + Delta-G solvation = -4044.401713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38215 -39.95934 -37.94895 -37.68638 -36.77270 -34.46425 -33.46128 -32.51104 -31.17350 -30.30939 -29.53956 -27.14588 -26.55779 -25.44588 -23.71032 -23.09224 -22.32124 -22.09392 -20.69897 -20.01182 -19.00744 -18.03241 -17.46114 -17.08659 -16.64266 -16.19291 -15.87789 -15.68561 -15.37586 -14.84522 -14.61902 -14.47489 -14.40789 -14.34867 -14.12229 -13.72264 -13.62571 -13.39689 -13.05435 -12.73329 -12.41433 -12.32823 -12.17902 -12.03898 -11.81557 -11.36099 -11.07415 -10.93533 -10.91403 -10.71842 -10.59489 -10.46071 -10.43703 -10.16757 -9.97581 -9.67754 -9.34927 -9.15943 -8.90328 -8.87536 -6.92970 -5.77542 -3.05943 0.26602 0.74906 2.38120 2.87719 3.03687 3.21238 3.44477 3.48714 3.49722 3.50893 4.09799 4.15216 4.36500 4.48278 4.56926 4.58138 4.61375 4.73069 4.75857 4.78054 4.89121 5.03562 5.10982 5.19072 5.19658 5.35814 5.38167 5.47182 5.57221 5.61797 5.78772 5.79134 5.81063 5.93625 5.96312 6.00436 6.08775 6.21771 6.37117 6.43243 6.62702 6.63989 6.75883 6.85366 7.07572 7.38779 7.69726 8.07569 8.41688 9.52891 10.10014 10.44801 11.45365 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031900 B = 0.001756 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.529872 B =15942.246194 C =16467.816588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.718 5.718 16 C 0.557 3.443 17 O -0.536 6.536 18 C -0.123 4.123 19 C -0.076 4.076 20 C -0.122 4.122 21 C 0.089 3.911 22 C 0.057 3.943 23 C -0.056 4.056 24 O -0.316 6.316 25 C 0.058 3.942 26 C -0.188 4.188 27 C 0.060 3.940 28 O -0.319 6.319 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.023 0.977 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.400 0.600 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 5.138 -31.260 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.369 5.369 16 C 0.343 3.657 17 O -0.414 6.414 18 C -0.127 4.127 19 C -0.095 4.095 20 C -0.141 4.141 21 C 0.044 3.956 22 C 0.012 3.988 23 C -0.076 4.076 24 O -0.232 6.232 25 C -0.017 4.017 26 C -0.226 4.226 27 C -0.015 4.015 28 O -0.235 6.235 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.378 4.164 -31.347 31.652 hybrid contribution 0.042 0.591 0.963 1.131 sum 1.420 4.755 -30.384 30.786 Atomic orbital electron populations 1.21805 0.94618 1.02061 1.01491 1.21564 0.96753 1.00521 0.94163 0.90483 1.20573 0.96648 0.94226 0.85335 1.42326 1.67070 1.27576 1.00545 1.19199 1.28743 1.05495 0.83643 0.91191 1.24735 1.00987 0.97431 0.97859 1.69647 1.43434 1.16667 1.28596 0.86249 0.77997 0.77722 0.84107 1.21272 1.21707 1.21266 1.21478 1.00338 0.95338 0.82590 1.45979 1.57288 1.27866 1.05795 1.18042 0.79688 0.84873 0.83081 1.90800 1.39902 1.24039 1.86652 1.19909 1.02429 0.96777 0.93546 1.21281 0.95809 0.93320 0.99082 1.21042 1.01965 1.01145 0.89915 1.19429 0.97459 0.91364 0.87321 1.19008 0.99616 0.94437 0.85691 1.21189 0.96910 1.00263 0.89208 1.86418 1.60659 1.50662 1.25508 1.22675 0.89743 0.93389 0.95913 1.22485 1.02151 0.97722 1.00225 1.22666 0.89715 0.94902 0.94188 1.86320 1.32747 1.67481 1.36991 0.92715 0.91070 0.93954 0.96085 0.95945 0.78208 0.93488 0.91071 0.91041 0.76420 0.84384 0.83911 0.83308 0.92247 0.87599 0.88973 0.89675 0.92211 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.73 -18.09 5.33 -59.91 -0.32 -18.41 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 10 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.13 1.69 5.06 -4.04 -0.02 1.67 16 15 N -0.72 -8.25 5.23 -61.32 -0.32 -8.57 16 16 C 0.56 7.22 7.76 -12.44 -0.10 7.13 16 17 O -0.54 -8.87 16.34 5.29 0.09 -8.79 16 18 C -0.12 -1.32 5.88 -104.94 -0.62 -1.94 16 19 C -0.08 -0.63 9.53 -39.17 -0.37 -1.00 16 20 C -0.12 -0.99 9.98 -39.52 -0.39 -1.39 16 21 C 0.09 0.86 5.74 -39.09 -0.22 0.64 16 22 C 0.06 0.59 5.72 -39.36 -0.23 0.37 16 23 C -0.06 -0.62 9.54 -39.06 -0.37 -0.99 16 24 O -0.32 -3.24 10.16 -36.80 -0.37 -3.61 16 25 C 0.06 0.37 6.51 36.68 0.24 0.61 16 26 C -0.19 -0.92 5.92 -27.69 -0.16 -1.09 16 27 C 0.06 0.34 6.51 36.68 0.24 0.58 16 28 O -0.32 -2.96 10.15 -36.20 -0.37 -3.33 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 31 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.38 9.86 6.85 -40.82 -0.28 9.58 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.40 3.61 5.67 -40.82 -0.23 3.37 16 39 H 0.14 0.81 6.38 -52.49 -0.34 0.48 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.15 1.69 7.65 -52.49 -0.40 1.29 16 42 H 0.06 0.34 7.93 -51.93 -0.41 -0.07 16 43 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.30 7.93 -51.93 -0.41 -0.11 16 47 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -34.28 384.25 -8.99 -43.27 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.01 Total: 6.75 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.17 Total: -3.23 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.08 Total: -54.19 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.65 Total: -15.73 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.28 -8.99 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270420653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.536 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds