Wall clock time and date at job start Tue Mar 31 2020 17:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21588 * 119.99783 * 359.97438 * 16 15 14 18 18 C 1.47609 * 120.00288 * 179.97438 * 16 15 14 19 19 C 1.39699 * 120.04768 * 359.97438 * 18 16 15 20 20 C 1.37869 * 120.07844 * 179.97438 * 19 18 16 21 21 C 1.38779 * 119.91128 * 0.03436 * 20 19 18 22 22 C 1.39022 * 120.28995 * 359.97438 * 21 20 19 23 23 C 1.38050 * 120.21971 * 359.70233 * 22 21 20 24 24 O 1.36504 * 119.58914 * 179.97438 * 22 21 20 25 25 C 1.42895 * 115.93206 * 68.28549 * 24 22 21 26 26 C 1.52062 * 110.76832 * 275.59339 * 25 24 22 27 27 C 1.52061 * 112.36553 * 64.81485 * 26 25 24 28 28 O 1.36321 * 120.15454 * 179.97438 * 21 20 19 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 32 32 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 39 39 H 1.08002 * 119.96486 * 0.02562 * 19 18 16 40 40 H 1.08000 * 120.04441 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.20362 * 180.31482 * 23 22 21 42 42 H 1.09005 * 109.22020 * 35.92876 * 25 24 22 43 43 H 1.09006 * 109.21596 * 155.26194 * 25 24 22 44 44 H 1.09007 * 108.90432 * 185.55137 * 26 25 24 45 45 H 1.08998 * 108.90659 * 304.16411 * 26 25 24 46 46 H 1.09002 * 109.21654 * 55.49988 * 27 26 25 47 47 H 1.08998 * 109.21447 * 174.82468 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6288 -1.4452 -3.7795 18 6 1.6055 0.3491 -4.8681 19 6 0.8785 1.5350 -4.7388 20 6 0.5135 2.2476 -5.8613 21 6 0.8686 1.7849 -7.1205 22 6 1.5919 0.6054 -7.2559 23 6 1.9677 -0.1115 -6.1376 24 8 1.9332 0.1632 -8.5015 25 6 2.8920 0.9555 -9.2049 26 6 2.2135 2.1115 -9.9230 27 6 1.5775 3.0992 -8.9575 28 8 0.5099 2.4852 -8.2337 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 0.6807 1.9070 5.4838 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 0.6027 1.8946 -3.7585 40 1 -0.0482 3.1645 -5.7607 41 1 2.5339 -1.0251 -6.2429 42 1 3.6199 1.3509 -8.4963 43 1 3.4063 0.3313 -9.9357 44 1 2.9542 2.6355 -10.5272 45 1 1.4398 1.7139 -10.5799 46 1 2.3326 3.4498 -8.2538 47 1 1.1886 3.9491 -9.5182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270420653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:29 Heat of formation + Delta-G solvation = -100.775955 kcal Electronic energy + Delta-G solvation = -27825.512128 eV Core-core repulsion = 23780.114331 eV Total energy + Delta-G solvation = -4045.397796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06205 -40.91773 -38.59260 -38.55173 -38.01028 -36.01587 -34.31329 -33.78616 -32.02249 -31.83678 -30.45879 -27.81284 -27.60960 -27.05527 -24.92152 -23.84175 -23.72993 -22.60330 -21.70038 -21.24379 -19.78766 -19.18451 -18.64248 -18.11848 -17.54895 -17.08437 -16.71238 -16.52665 -16.43806 -16.22734 -15.70680 -15.48678 -15.34416 -15.18256 -15.08895 -14.89466 -14.73275 -14.36685 -14.16791 -13.97479 -13.63840 -13.55070 -13.01817 -12.95262 -12.86871 -12.76042 -12.35056 -12.20815 -12.16471 -11.98347 -11.84467 -11.71467 -11.64112 -11.43791 -11.19157 -10.99010 -10.91914 -10.23383 -10.01993 -9.64133 -8.97521 -7.94108 -5.22036 -0.48346 0.05340 1.48751 1.51262 1.56352 1.57329 1.98470 2.39805 2.43437 2.57941 2.76672 3.39484 3.59979 3.61976 3.69970 3.71852 3.84675 3.98031 3.98588 4.08873 4.12596 4.19125 4.20434 4.34507 4.35190 4.37329 4.56247 4.63792 4.72038 4.75475 4.79036 4.83922 4.93821 4.97523 5.06121 5.07264 5.08724 5.12422 5.14828 5.26610 5.35123 5.40869 5.49908 5.51624 6.04776 6.28652 6.43129 6.45936 7.10789 7.35700 8.11133 8.35556 9.28988 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031900 B = 0.001756 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.529872 B =15942.246194 C =16467.816588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.082 0.918 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.137 3.863 15 N -0.704 5.704 16 C 0.558 3.442 17 O -0.579 6.579 18 C -0.136 4.136 19 C -0.063 4.063 20 C -0.117 4.117 21 C 0.087 3.913 22 C 0.046 3.954 23 C -0.070 4.070 24 O -0.340 6.340 25 C 0.047 3.953 26 C -0.184 4.184 27 C 0.051 3.949 28 O -0.336 6.336 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.415 0.585 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.133 0.867 42 H 0.062 0.938 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 6.479 -32.351 33.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.101 0.899 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.206 1.206 14 C 0.013 3.987 15 N -0.357 5.357 16 C 0.346 3.654 17 O -0.460 6.460 18 C -0.139 4.139 19 C -0.082 4.082 20 C -0.135 4.135 21 C 0.042 3.958 22 C 0.002 3.998 23 C -0.089 4.089 24 O -0.257 6.257 25 C -0.027 4.027 26 C -0.221 4.221 27 C -0.023 4.023 28 O -0.253 6.253 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.253 0.747 39 H 0.184 0.816 40 H 0.187 0.813 41 H 0.151 0.849 42 H 0.081 0.919 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.191 5.508 -32.468 32.953 hybrid contribution 0.132 0.179 1.153 1.174 sum 1.323 5.687 -31.315 31.855 Atomic orbital electron populations 1.21753 0.93840 1.01994 1.01911 1.21338 0.97188 1.00212 0.92553 0.89925 1.20728 0.96591 0.94139 0.85674 1.42486 1.66930 1.27733 1.01247 1.19594 1.27943 1.05374 0.85101 0.90923 1.25524 1.01675 0.97940 1.01430 1.69792 1.44899 1.17875 1.29148 0.85234 0.77853 0.77156 0.79640 1.20528 1.22023 1.20571 1.21205 0.99839 0.95095 0.82582 1.45774 1.57004 1.28096 1.04792 1.18361 0.78812 0.84369 0.83817 1.90778 1.41975 1.26047 1.87242 1.19739 1.04109 0.97874 0.92191 1.21532 0.94242 0.91863 1.00554 1.21329 1.01393 1.01782 0.89045 1.19637 0.96839 0.91097 0.88236 1.19093 1.00205 0.94860 0.85622 1.21129 0.97634 1.00189 0.89981 1.86368 1.61631 1.52141 1.25607 1.22980 0.89446 0.94132 0.96161 1.22474 1.02500 0.97195 0.99934 1.22981 0.89442 0.95495 0.94403 1.86286 1.34380 1.67495 1.37120 0.93060 0.93737 0.90364 0.96180 0.96152 0.79005 0.93967 0.91731 0.91572 0.74664 0.81558 0.81279 0.84881 0.91915 0.86031 0.85936 0.90616 0.91473 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.94 71.98 0.64 -3.09 16 2 C -0.09 -2.68 2.46 -10.79 -0.03 -2.71 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.16 6.03 5.65 86.38 0.49 6.52 16 5 N -0.74 -36.76 5.33 -343.46 -1.83 -38.59 16 6 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 7 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 8 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 9 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 10 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.14 3.53 5.06 86.38 0.44 3.97 16 15 N -0.70 -14.96 5.23 -466.19 -2.44 -17.40 16 16 C 0.56 14.17 7.76 86.72 0.67 14.84 16 17 O -0.58 -19.57 16.34 -3.99 -0.07 -19.63 16 18 C -0.14 -2.80 5.88 -20.07 -0.12 -2.92 16 19 C -0.06 -0.89 9.53 22.54 0.21 -0.67 16 20 C -0.12 -1.60 9.98 22.31 0.22 -1.37 16 21 C 0.09 1.55 5.74 22.59 0.13 1.68 16 22 C 0.05 0.97 5.72 22.41 0.13 1.09 16 23 C -0.07 -1.57 9.54 22.61 0.22 -1.36 16 24 O -0.34 -7.04 10.16 -84.62 -0.86 -7.89 16 25 C 0.05 0.56 6.51 71.67 0.47 1.02 16 26 C -0.18 -1.46 5.92 29.97 0.18 -1.29 16 27 C 0.05 0.47 6.51 71.67 0.47 0.93 16 28 O -0.34 -5.66 10.15 -82.47 -0.84 -6.49 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.46 7.18 -2.39 -0.02 1.45 16 31 H 0.08 1.54 7.18 -2.39 -0.02 1.52 16 32 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.38 19.52 6.85 -92.71 -0.63 18.89 16 35 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.41 6.21 5.67 -92.71 -0.53 5.69 16 39 H 0.17 1.29 6.38 -2.91 -0.02 1.27 16 40 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.13 3.30 7.65 -2.91 -0.02 3.28 16 42 H 0.06 0.68 7.93 -2.38 -0.02 0.66 16 43 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 45 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.52 7.93 -2.39 -0.02 0.50 16 47 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -75.14 384.25 1.54 -73.60 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.16 Total: 26.37 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.43 Total: -0.04 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -3.99 Total: -113.89 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.76 Total: -34.02 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -75.14 1.54 -73.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270420653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.176 kcal (2) G-P(sol) polarization free energy of solvation -75.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds