Wall clock time and date at job start Tue Mar 31 2020 17:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47154 * 2 1 4 4 C 1.52999 * 109.47249 * 239.99747 * 2 1 3 5 5 N 1.46497 * 109.47118 * 185.00201 * 4 2 1 6 6 C 1.36935 * 119.99764 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00233 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00058 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47147 * 59.99839 * 10 8 6 12 12 H 1.48495 * 109.47129 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46782 * 299.99876 * 10 8 6 14 14 N 1.46505 * 109.46953 * 119.99836 * 2 1 3 15 15 C 1.46502 * 120.00242 * 60.00150 * 14 2 1 16 16 C 1.34771 * 119.99999 * 239.99767 * 14 2 1 17 17 O 1.21589 * 120.00457 * 354.55758 * 16 14 2 18 18 C 1.47614 * 120.00143 * 174.82777 * 16 14 2 19 19 C 1.39701 * 120.04540 * 335.55642 * 18 16 14 20 20 C 1.37869 * 120.07016 * 179.69508 * 19 18 16 21 21 C 1.38782 * 119.90880 * 0.55632 * 20 19 18 22 22 C 1.39021 * 120.30240 * 359.76692 * 21 20 19 23 23 C 1.38057 * 120.20651 * 359.92637 * 22 21 20 24 24 O 1.36500 * 119.59948 * 179.90696 * 22 21 20 25 25 C 1.42898 * 115.93388 * 68.32068 * 24 22 21 26 26 C 1.52063 * 110.77206 * 275.61823 * 25 24 22 27 27 C 1.52058 * 112.36704 * 64.78706 * 26 25 24 28 28 O 1.36324 * 120.15491 * 179.74383 * 21 20 19 29 29 H 1.09003 * 109.46833 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47052 * 299.99931 * 1 2 3 31 31 H 1.08995 * 109.47190 * 59.99914 * 1 2 3 32 32 H 1.08997 * 109.46867 * 304.99972 * 4 2 1 33 33 H 1.08996 * 109.47025 * 64.99690 * 4 2 1 34 34 H 0.97003 * 120.00247 * 359.97438 * 5 4 2 35 35 H 0.96998 * 119.99944 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.46909 * 275.77130 * 15 14 2 37 37 H 1.09007 * 109.46822 * 35.76691 * 15 14 2 38 38 H 1.08992 * 109.47119 * 155.76811 * 15 14 2 39 39 H 1.07999 * 119.96275 * 359.97438 * 19 18 16 40 40 H 1.08000 * 120.04569 * 180.26627 * 20 19 18 41 41 H 1.08002 * 120.19591 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.21375 * 35.94968 * 25 24 22 43 43 H 1.09000 * 109.21735 * 155.28141 * 25 24 22 44 44 H 1.08999 * 108.90363 * 185.53671 * 26 25 24 45 45 H 1.09003 * 108.89648 * 304.14171 * 26 25 24 46 46 H 1.09006 * 109.21214 * 55.48966 * 27 26 25 47 47 H 1.08997 * 109.21213 * 174.80477 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1838 -1.4380 -2.2071 7 1 3.6468 -1.8432 -3.0520 8 6 5.5673 -1.5372 -2.1517 9 7 6.2219 -1.0430 -1.1223 10 14 6.5003 -2.3709 -3.5389 11 1 6.2429 -1.6503 -4.8116 12 1 7.9550 -2.3460 -3.2420 13 1 6.0444 -3.7785 -3.6660 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4281 16 6 2.7932 -0.0356 2.0833 17 8 3.1688 1.0957 1.8437 18 6 3.1908 -0.6939 3.3433 19 6 2.4103 -1.7259 3.8700 20 6 2.7846 -2.3453 5.0435 21 6 3.9320 -1.9344 5.7074 22 6 4.7094 -0.9035 5.1921 23 6 4.3461 -0.2815 4.0143 24 8 5.8340 -0.5096 5.8579 25 6 6.9094 -1.4503 5.8792 26 6 6.7267 -2.4528 7.0078 27 6 5.4963 -3.3249 6.8136 28 8 4.3039 -2.5398 6.8708 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -1.7198 -1.2950 33 1 1.7516 -0.1584 -2.1369 34 1 3.9825 -0.4622 -0.4318 35 1 7.1886 -1.1126 -1.0835 36 1 0.6876 -2.1467 1.9089 37 1 1.6299 -2.6215 0.4753 38 1 2.4124 -2.5548 2.0726 39 1 1.5152 -2.0419 3.3549 40 1 2.1832 -3.1460 5.4480 41 1 4.9504 0.5191 3.6140 42 1 6.9396 -1.9821 4.9282 43 1 7.8496 -0.9173 6.0213 44 1 7.6082 -3.0920 7.0585 45 1 6.6292 -1.9113 7.9487 46 1 5.5552 -3.8174 5.8429 47 1 5.4656 -4.0815 7.5975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270984729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:56 Heat of formation + Delta-G solvation = -42.961877 kcal Electronic energy + Delta-G solvation = -29830.131874 eV Core-core repulsion = 25787.241084 eV Total energy + Delta-G solvation = -4042.890790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06998 -39.88796 -37.58831 -37.37903 -36.30724 -34.11876 -33.15331 -31.94685 -30.79302 -30.17587 -29.00598 -27.10022 -26.56138 -25.63863 -23.86949 -22.66330 -22.44825 -21.77282 -20.88892 -19.24032 -18.31892 -17.78081 -17.12130 -17.03400 -16.18683 -15.88983 -15.55193 -15.33010 -15.11573 -14.71329 -14.35543 -14.12618 -14.04791 -14.00236 -13.57129 -13.49072 -13.29793 -13.20457 -12.74451 -12.42824 -12.27155 -12.13606 -12.04987 -11.86639 -11.60415 -11.46240 -11.10036 -11.01216 -10.83346 -10.75628 -10.59708 -10.46189 -10.07167 -10.03506 -9.68072 -9.52988 -8.92267 -8.85366 -8.52455 -8.27028 -6.88316 -5.71637 -3.01111 0.70689 1.15003 2.82534 3.12043 3.33415 3.43991 3.48501 3.49667 3.58918 3.89385 4.41964 4.48763 4.58904 4.64870 4.77084 4.89153 4.95814 5.06609 5.13025 5.15153 5.24779 5.28351 5.37286 5.39677 5.44359 5.52435 5.55958 5.59808 5.64049 5.71458 5.80559 5.91305 5.95275 6.05211 6.11915 6.19797 6.21387 6.22487 6.36258 6.40621 6.52301 6.72808 6.96252 7.00114 7.44796 7.69417 7.71130 8.45733 8.50662 9.57238 10.16545 10.51994 11.50311 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010439 B = 0.003869 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.659231 B = 7234.936228 C = 8947.809119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.242 4.242 7 H 0.068 0.932 8 C -0.012 4.012 9 N -0.929 5.929 10 Si 0.905 3.095 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.589 5.589 15 C 0.067 3.933 16 C 0.562 3.438 17 O -0.529 6.529 18 C -0.113 4.113 19 C -0.095 4.095 20 C -0.129 4.129 21 C 0.084 3.916 22 C 0.056 3.944 23 C -0.051 4.051 24 O -0.317 6.317 25 C 0.056 3.944 26 C -0.186 4.186 27 C 0.059 3.941 28 O -0.321 6.321 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.028 0.972 34 H 0.387 0.613 35 H 0.254 0.746 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 -5.835 16.287 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.119 0.881 4 C 0.015 3.985 5 N -0.373 5.373 6 C -0.373 4.373 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.577 5.577 10 Si 0.736 3.264 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.214 1.214 14 N -0.321 5.321 15 C -0.076 4.076 16 C 0.350 3.650 17 O -0.406 6.406 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.147 4.147 21 C 0.039 3.961 22 C 0.012 3.988 23 C -0.071 4.071 24 O -0.233 6.233 25 C -0.019 4.019 26 C -0.224 4.224 27 C -0.015 4.015 28 O -0.237 6.237 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.222 0.778 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.041 -5.139 16.264 18.453 hybrid contribution 1.051 -0.733 -0.705 1.463 sum -5.991 -5.872 15.559 17.676 Atomic orbital electron populations 1.22057 0.95020 1.02107 1.02142 1.21428 0.93254 0.98586 0.84469 0.88061 1.20995 0.87183 0.96724 0.93601 1.42309 0.99661 1.70107 1.25179 1.19164 0.89436 1.29532 0.99152 0.91361 1.24739 0.96431 1.01661 0.97979 1.69685 1.07139 1.50659 1.30200 0.86302 0.79038 0.79200 0.81818 1.21283 1.21751 1.21380 1.47490 1.50436 1.11949 1.22270 1.22304 0.99408 0.82453 1.03402 1.18055 0.78115 0.85799 0.83021 1.90797 1.53753 1.18898 1.77188 1.19858 0.96869 0.98412 0.96506 1.22032 1.00393 0.94033 0.94874 1.20998 0.97674 1.01554 0.94515 1.19398 0.95549 0.93606 0.87526 1.18970 0.89941 0.96921 0.92970 1.21209 0.95967 0.99132 0.90758 1.86391 1.22125 1.41932 1.72854 1.22668 0.89484 0.91478 0.98231 1.22468 0.99197 0.99324 1.01381 1.22647 0.83458 0.92441 1.02992 1.86298 1.43306 1.65070 1.29045 0.92354 0.92593 0.91312 0.96173 0.95391 0.77826 0.93567 0.92737 0.90336 0.89858 0.82726 0.84335 0.83443 0.91978 0.87713 0.89144 0.89909 0.92158 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.19 37.16 0.34 -1.58 16 2 C 0.13 2.14 2.80 -67.93 -0.19 1.95 16 3 H 0.10 1.98 6.91 -51.93 -0.36 1.62 16 4 C 0.14 2.88 5.48 -4.04 -0.02 2.86 16 5 N -0.73 -18.89 5.43 -59.91 -0.33 -19.22 16 6 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 16 7 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 8 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 10 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 N -0.59 -9.79 2.24 -175.12 -0.39 -10.19 16 15 C 0.07 0.87 7.77 59.85 0.47 1.34 16 16 C 0.56 10.55 7.19 -12.44 -0.09 10.46 16 17 O -0.53 -11.90 15.93 5.29 0.08 -11.82 16 18 C -0.11 -1.82 5.50 -104.93 -0.58 -2.40 16 19 C -0.10 -1.18 7.51 -39.17 -0.29 -1.48 16 20 C -0.13 -1.51 9.98 -39.52 -0.39 -1.91 16 21 C 0.08 1.13 5.74 -39.09 -0.22 0.91 16 22 C 0.06 0.85 5.72 -39.36 -0.23 0.63 16 23 C -0.05 -0.86 9.53 -39.06 -0.37 -1.23 16 24 O -0.32 -4.66 10.16 -36.78 -0.37 -5.04 16 25 C 0.06 0.62 6.51 36.68 0.24 0.86 16 26 C -0.19 -1.61 5.92 -27.69 -0.16 -1.77 16 27 C 0.06 0.55 6.51 36.68 0.24 0.79 16 28 O -0.32 -4.03 10.15 -36.21 -0.37 -4.39 16 29 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.39 6.93 -51.93 -0.36 0.03 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.39 10.97 7.06 -40.82 -0.29 10.68 16 35 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 36 H 0.05 0.51 7.13 -51.93 -0.37 0.14 16 37 H 0.08 1.10 6.57 -51.92 -0.34 0.76 16 38 H 0.08 1.07 5.11 -51.93 -0.27 0.81 16 39 H 0.16 1.54 4.40 -52.49 -0.23 1.31 16 40 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.15 2.64 7.84 -52.49 -0.41 2.23 16 42 H 0.06 0.71 7.93 -51.93 -0.41 0.30 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.55 7.93 -51.93 -0.41 0.14 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -35.55 375.39 -8.31 -43.86 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.78 Total: 9.62 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.52 Total: 1.98 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.01 Total: -57.44 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.66 Total: -21.25 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.55 -8.31 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270984729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.897 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds