Wall clock time and date at job start Tue Mar 31 2020 17:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47154 * 2 1 4 4 C 1.52999 * 109.47249 * 239.99747 * 2 1 3 5 5 N 1.46497 * 109.47118 * 185.00201 * 4 2 1 6 6 C 1.36935 * 119.99764 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00233 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00058 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47147 * 59.99839 * 10 8 6 12 12 H 1.48495 * 109.47129 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46782 * 299.99876 * 10 8 6 14 14 N 1.46505 * 109.46953 * 119.99836 * 2 1 3 15 15 C 1.46502 * 120.00242 * 60.00150 * 14 2 1 16 16 C 1.34771 * 119.99999 * 239.99767 * 14 2 1 17 17 O 1.21589 * 120.00457 * 354.55758 * 16 14 2 18 18 C 1.47614 * 120.00143 * 174.82777 * 16 14 2 19 19 C 1.39701 * 120.04540 * 335.55642 * 18 16 14 20 20 C 1.37869 * 120.07016 * 179.69508 * 19 18 16 21 21 C 1.38782 * 119.90880 * 0.55632 * 20 19 18 22 22 C 1.39021 * 120.30240 * 359.76692 * 21 20 19 23 23 C 1.38057 * 120.20651 * 359.92637 * 22 21 20 24 24 O 1.36500 * 119.59948 * 179.90696 * 22 21 20 25 25 C 1.42898 * 115.93388 * 68.32068 * 24 22 21 26 26 C 1.52063 * 110.77206 * 275.61823 * 25 24 22 27 27 C 1.52058 * 112.36704 * 64.78706 * 26 25 24 28 28 O 1.36324 * 120.15491 * 179.74383 * 21 20 19 29 29 H 1.09003 * 109.46833 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47052 * 299.99931 * 1 2 3 31 31 H 1.08995 * 109.47190 * 59.99914 * 1 2 3 32 32 H 1.08997 * 109.46867 * 304.99972 * 4 2 1 33 33 H 1.08996 * 109.47025 * 64.99690 * 4 2 1 34 34 H 0.97003 * 120.00247 * 359.97438 * 5 4 2 35 35 H 0.96998 * 119.99944 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.46909 * 275.77130 * 15 14 2 37 37 H 1.09007 * 109.46822 * 35.76691 * 15 14 2 38 38 H 1.08992 * 109.47119 * 155.76811 * 15 14 2 39 39 H 1.07999 * 119.96275 * 359.97438 * 19 18 16 40 40 H 1.08000 * 120.04569 * 180.26627 * 20 19 18 41 41 H 1.08002 * 120.19591 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.21375 * 35.94968 * 25 24 22 43 43 H 1.09000 * 109.21735 * 155.28141 * 25 24 22 44 44 H 1.08999 * 108.90363 * 185.53671 * 26 25 24 45 45 H 1.09003 * 108.89648 * 304.14171 * 26 25 24 46 46 H 1.09006 * 109.21214 * 55.48966 * 27 26 25 47 47 H 1.08997 * 109.21213 * 174.80477 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1838 -1.4380 -2.2071 7 1 3.6468 -1.8432 -3.0520 8 6 5.5673 -1.5372 -2.1517 9 7 6.2219 -1.0430 -1.1223 10 14 6.5003 -2.3709 -3.5389 11 1 6.2429 -1.6503 -4.8116 12 1 7.9550 -2.3460 -3.2420 13 1 6.0444 -3.7785 -3.6660 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4281 16 6 2.7932 -0.0356 2.0833 17 8 3.1688 1.0957 1.8437 18 6 3.1908 -0.6939 3.3433 19 6 2.4103 -1.7259 3.8700 20 6 2.7846 -2.3453 5.0435 21 6 3.9320 -1.9344 5.7074 22 6 4.7094 -0.9035 5.1921 23 6 4.3461 -0.2815 4.0143 24 8 5.8340 -0.5096 5.8579 25 6 6.9094 -1.4503 5.8792 26 6 6.7267 -2.4528 7.0078 27 6 5.4963 -3.3249 6.8136 28 8 4.3039 -2.5398 6.8708 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -1.7198 -1.2950 33 1 1.7516 -0.1584 -2.1369 34 1 3.9825 -0.4622 -0.4318 35 1 7.1886 -1.1126 -1.0835 36 1 0.6876 -2.1467 1.9089 37 1 1.6299 -2.6215 0.4753 38 1 2.4124 -2.5548 2.0726 39 1 1.5152 -2.0419 3.3549 40 1 2.1832 -3.1460 5.4480 41 1 4.9504 0.5191 3.6140 42 1 6.9396 -1.9821 4.9282 43 1 7.8496 -0.9173 6.0213 44 1 7.6082 -3.0920 7.0585 45 1 6.6292 -1.9113 7.9487 46 1 5.5552 -3.8174 5.8429 47 1 5.4656 -4.0815 7.5975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270984729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:55 Heat of formation + Delta-G solvation = -67.224490 kcal Electronic energy + Delta-G solvation = -29831.183980 eV Core-core repulsion = 25787.241084 eV Total energy + Delta-G solvation = -4043.942896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.13630 -41.14700 -38.57935 -38.50511 -37.79326 -35.91264 -34.23505 -33.38453 -31.96355 -31.85617 -30.10634 -28.19207 -27.49701 -27.38292 -25.12622 -24.35456 -23.62013 -22.61483 -22.19195 -20.54943 -19.37095 -19.11140 -18.92965 -18.11809 -17.47655 -17.04682 -16.75993 -16.48878 -16.39885 -16.29578 -15.54802 -15.28579 -15.22567 -15.15499 -15.08632 -14.82472 -14.46051 -14.40610 -13.90904 -13.83537 -13.66859 -13.36625 -13.18460 -13.05621 -12.89778 -12.75613 -12.51887 -12.49836 -12.19950 -12.13123 -11.86143 -11.79360 -11.73627 -11.44248 -11.02839 -10.98933 -10.88816 -10.02763 -9.65825 -9.53044 -9.00367 -7.93587 -5.24038 -0.40766 0.06715 1.44036 1.48306 1.54242 1.61409 1.88372 2.40796 2.43371 2.55034 2.78257 3.38962 3.44231 3.61693 3.68487 3.82713 3.85038 3.97486 4.11119 4.15372 4.18546 4.21714 4.28167 4.33714 4.35584 4.38334 4.47003 4.62133 4.65622 4.75281 4.79321 4.82829 4.86572 4.90861 4.95224 5.02875 5.05309 5.11900 5.14498 5.18280 5.32595 5.36113 5.47170 5.66386 6.03459 6.25402 6.38494 6.43711 7.12651 7.31919 8.09398 8.32132 9.29382 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010439 B = 0.003869 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.659231 B = 7234.936228 C = 8947.809119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.128 3.872 3 H 0.064 0.936 4 C 0.141 3.859 5 N -0.744 5.744 6 C -0.244 4.244 7 H 0.080 0.920 8 C -0.077 4.077 9 N -0.971 5.971 10 Si 0.976 3.024 11 H -0.279 1.279 12 H -0.299 1.299 13 H -0.272 1.272 14 N -0.586 5.586 15 C 0.058 3.942 16 C 0.551 3.449 17 O -0.587 6.587 18 C -0.134 4.134 19 C -0.078 4.078 20 C -0.114 4.114 21 C 0.086 3.914 22 C 0.044 3.956 23 C -0.080 4.080 24 O -0.341 6.341 25 C 0.045 3.955 26 C -0.180 4.180 27 C 0.050 3.950 28 O -0.330 6.330 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.371 0.629 35 H 0.248 0.752 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.189 0.811 40 H 0.181 0.819 41 H 0.113 0.887 42 H 0.051 0.949 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 -9.250 17.019 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.083 0.917 4 C 0.014 3.986 5 N -0.386 5.386 6 C -0.376 4.376 7 H 0.098 0.902 8 C -0.269 4.269 9 N -0.622 5.622 10 Si 0.804 3.196 11 H -0.205 1.205 12 H -0.226 1.226 13 H -0.198 1.198 14 N -0.317 5.317 15 C -0.083 4.083 16 C 0.341 3.659 17 O -0.468 6.468 18 C -0.137 4.137 19 C -0.095 4.095 20 C -0.132 4.132 21 C 0.041 3.959 22 C 0.000 4.000 23 C -0.100 4.100 24 O -0.258 6.258 25 C -0.030 4.030 26 C -0.217 4.217 27 C -0.023 4.023 28 O -0.246 6.246 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.205 0.795 40 H 0.198 0.802 41 H 0.131 0.869 42 H 0.069 0.931 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.373 -8.605 16.971 21.211 hybrid contribution 1.752 0.312 -0.903 1.995 sum -7.621 -8.293 16.068 19.622 Atomic orbital electron populations 1.21970 0.90619 1.04068 1.03268 1.21349 0.96393 0.96267 0.83522 0.91729 1.21230 0.84052 0.98086 0.95254 1.42561 1.02122 1.69819 1.24140 1.19644 0.89968 1.28368 0.99619 0.90189 1.25622 0.97572 1.03163 1.00582 1.69892 1.06829 1.52889 1.32605 0.85183 0.76932 0.78719 0.78731 1.20530 1.22558 1.19762 1.47621 1.49450 1.13302 1.21320 1.22633 1.02012 0.79909 1.03740 1.18584 0.77707 0.85413 0.84199 1.90750 1.55989 1.21473 1.78633 1.19775 0.97781 1.00260 0.95891 1.22311 1.00320 0.91993 0.94908 1.21412 0.96772 1.01580 0.93475 1.19578 0.95696 0.92880 0.87710 1.19064 0.90655 0.97564 0.92680 1.21074 0.96927 0.99618 0.92361 1.86335 1.22868 1.43849 1.72760 1.22971 0.89087 0.91907 0.98989 1.22449 1.00512 0.98986 0.99776 1.22988 0.82338 0.92618 1.04387 1.86277 1.44710 1.65227 1.28429 0.89839 0.91618 0.90138 0.93977 0.95210 0.79790 0.94330 0.87626 0.90953 0.89720 0.79475 0.80215 0.86905 0.93064 0.86283 0.85955 0.90052 0.92035 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.19 71.98 0.66 -2.47 16 2 C 0.13 4.35 2.80 44.99 0.13 4.48 16 3 H 0.06 2.68 6.91 -2.39 -0.02 2.66 16 4 C 0.14 5.58 5.48 86.38 0.47 6.05 16 5 N -0.74 -39.46 5.43 -343.46 -1.87 -41.33 16 6 C -0.24 -13.93 9.99 84.03 0.84 -13.09 16 7 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 8 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 9 N -0.97 -62.55 13.06 21.65 0.28 -62.26 16 10 Si 0.98 47.01 29.55 68.60 2.03 49.03 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 N -0.59 -19.36 2.24 -826.23 -1.85 -21.22 16 15 C 0.06 1.35 7.77 127.77 0.99 2.34 16 16 C 0.55 21.84 7.19 86.72 0.62 22.46 16 17 O -0.59 -28.97 15.93 -3.99 -0.06 -29.03 16 18 C -0.13 -4.48 5.50 -20.07 -0.11 -4.59 16 19 C -0.08 -1.77 7.51 22.54 0.17 -1.60 16 20 C -0.11 -2.34 9.98 22.31 0.22 -2.11 16 21 C 0.09 2.23 5.74 22.59 0.13 2.36 16 22 C 0.04 1.41 5.72 22.41 0.13 1.54 16 23 C -0.08 -2.94 9.53 22.61 0.22 -2.72 16 24 O -0.34 -10.65 10.16 -84.56 -0.86 -11.51 16 25 C 0.04 1.01 6.51 71.67 0.47 1.47 16 26 C -0.18 -2.81 5.92 29.97 0.18 -2.63 16 27 C 0.05 0.81 6.51 71.67 0.47 1.27 16 28 O -0.33 -7.56 10.15 -82.51 -0.84 -8.39 16 29 H 0.08 1.46 7.67 -2.39 -0.02 1.44 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.52 6.93 -2.39 -0.02 1.50 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.37 22.05 7.06 -92.71 -0.65 21.39 16 35 H 0.25 15.54 8.31 -92.71 -0.77 14.76 16 36 H 0.11 1.42 7.13 -2.38 -0.02 1.40 16 37 H 0.07 1.81 6.57 -2.38 -0.02 1.79 16 38 H 0.08 1.97 5.11 -2.39 -0.01 1.96 16 39 H 0.19 2.91 4.40 -2.91 -0.01 2.90 16 40 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.11 4.75 7.84 -2.91 -0.02 4.72 16 42 H 0.05 1.24 7.93 -2.39 -0.02 1.22 16 43 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 0.98 7.93 -2.38 -0.02 0.96 16 47 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -83.93 375.39 3.22 -80.70 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.34 Total: 35.35 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.05 Total: 8.66 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -3.44 Total: -124.81 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -1.76 Total: -48.94 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -83.93 3.22 -80.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270984729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.480 kcal (2) G-P(sol) polarization free energy of solvation -83.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds