Wall clock time and date at job start Tue Mar 31 2020 18:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47031 * 2 1 4 4 O 1.42893 * 109.47407 * 240.00157 * 2 1 3 5 5 C 1.35905 * 117.00297 * 84.94782 * 4 2 1 6 6 C 1.38727 * 120.05435 * 174.27880 * 5 4 2 7 7 C 1.38149 * 119.94124 * 179.70100 * 6 5 4 8 8 C 1.38262 * 120.05628 * 0.59427 * 7 6 5 9 9 C 1.38272 * 120.10678 * 359.67829 * 8 7 6 10 10 C 1.38141 * 120.05785 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.46827 * 119.99668 * 2 1 3 12 12 O 1.21281 * 119.99938 * 120.00642 * 11 2 1 13 13 N 1.34776 * 120.00231 * 300.27598 * 11 2 1 14 14 C 1.46501 * 119.99619 * 179.72697 * 13 11 2 15 15 C 1.53008 * 109.46715 * 180.02562 * 14 13 11 16 16 O 1.42895 * 110.89136 * 61.11555 * 15 14 13 17 17 C 1.55156 * 111.00234 * 185.00167 * 15 14 13 18 18 C 1.54330 * 102.94250 * 153.57448 * 17 15 14 19 19 N 1.47026 * 107.26832 * 337.80445 * 18 17 15 20 20 C 1.36928 * 125.64446 * 178.96331 * 19 18 17 21 21 H 1.08006 * 120.00004 * 179.97438 * 20 19 18 22 22 C 1.38821 * 120.00478 * 359.97280 * 20 19 18 23 23 N 1.31616 * 119.99288 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00334 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46772 * 90.00170 * 24 22 20 26 26 H 1.48495 * 109.46983 * 210.00032 * 24 22 20 27 27 H 1.48504 * 109.47073 * 330.00637 * 24 22 20 28 28 C 1.47417 * 108.70427 * 358.94054 * 19 18 17 29 29 H 1.09006 * 109.46743 * 60.00213 * 1 2 3 30 30 H 1.09002 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47345 * 299.99982 * 1 2 3 32 32 H 1.07998 * 120.03112 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.97161 * 180.27442 * 7 6 5 34 34 H 1.08001 * 119.94833 * 179.70405 * 8 7 6 35 35 H 1.08002 * 119.96646 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.02501 * 179.97438 * 10 9 8 37 37 H 0.96993 * 119.99925 * 359.72961 * 13 11 2 38 38 H 1.08996 * 109.47187 * 299.99490 * 14 13 11 39 39 H 1.08998 * 109.47747 * 60.00609 * 14 13 11 40 40 H 0.96702 * 114.00136 * 300.70603 * 16 15 14 41 41 H 1.09001 * 110.71995 * 271.93318 * 17 15 14 42 42 H 1.08999 * 110.72549 * 35.03041 * 17 15 14 43 43 H 1.08997 * 109.88252 * 97.22422 * 18 17 15 44 44 H 1.08998 * 109.87984 * 218.22935 * 18 17 15 45 45 H 0.97002 * 119.99632 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.37174 * 265.28859 * 28 19 18 47 47 H 1.09004 * 110.37011 * 142.96618 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.1116 0.0624 -2.3044 6 6 2.6777 -0.4941 -3.4421 7 6 2.7778 0.2541 -4.5991 8 6 2.3256 1.5605 -4.6202 9 6 1.7661 2.1192 -3.4859 10 6 1.6582 1.3732 -2.3283 11 6 2.0323 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7021 -0.2531 2.4546 14 6 2.1855 -0.9472 3.6507 15 6 1.6704 -0.2295 4.9000 16 8 0.2419 -0.2343 4.9378 17 6 2.2630 -0.8602 6.1877 18 6 2.2289 0.3102 7.1931 19 7 2.1898 1.5553 6.4122 20 6 2.1319 2.8212 6.9311 21 1 2.1072 3.6751 6.2702 22 6 2.1048 3.0071 8.3065 23 7 2.1353 1.9665 9.1118 24 14 2.0265 4.7340 9.0143 25 1 0.6069 5.1363 9.1818 26 1 2.7072 4.7594 10.3338 27 1 2.7031 5.6790 8.0899 28 6 2.2238 1.2153 4.9782 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.0358 -1.5129 -3.4246 33 1 3.2144 -0.1802 -5.4863 34 1 2.4091 2.1454 -5.5243 35 1 1.4133 3.1398 -3.5051 36 1 1.2215 1.8103 -1.4425 37 1 1.1444 0.5355 2.5435 38 1 1.8217 -1.9747 3.6465 39 1 3.2755 -0.9477 3.6551 40 1 -0.1732 0.1936 4.1764 41 1 1.6406 -1.6850 6.5349 42 1 3.2858 -1.1961 6.0173 43 1 1.3388 0.2364 7.8179 44 1 3.1223 0.2890 7.8171 45 1 2.1168 2.0963 10.0729 46 1 3.2471 1.2503 4.6041 47 1 1.5884 1.8960 4.4116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271221385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:48 Heat of formation + Delta-G solvation = -61.998259 kcal Electronic energy + Delta-G solvation = -28650.530017 eV Core-core repulsion = 24606.813748 eV Total energy + Delta-G solvation = -4043.716269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.92567 -39.75108 -38.55173 -37.49030 -35.18751 -34.32330 -32.66569 -32.05194 -31.13300 -29.99681 -29.58536 -28.21258 -25.94254 -24.95193 -23.67066 -23.01227 -22.29727 -20.77217 -20.15256 -19.86805 -18.74677 -18.02654 -16.97101 -16.51919 -16.24834 -16.08294 -15.96780 -15.32295 -15.00977 -14.79958 -14.68506 -14.26776 -14.21668 -13.85129 -13.73127 -13.51810 -13.38980 -12.96943 -12.90947 -12.75372 -12.30880 -12.17214 -11.96680 -11.89821 -11.76092 -11.41572 -11.13693 -11.03684 -10.91443 -10.77873 -10.39527 -10.24678 -10.14466 -9.87935 -9.77182 -9.48566 -9.33680 -9.22564 -8.62607 -8.52710 -6.87505 -5.75008 -3.08901 0.99692 1.11187 2.30622 2.40675 3.31847 3.37193 3.41683 3.44182 3.46233 4.21849 4.37189 4.42727 4.44983 4.50687 4.52929 4.58183 4.79500 4.81055 4.99633 5.04521 5.07763 5.16976 5.23839 5.31887 5.33701 5.47762 5.60409 5.64168 5.67523 5.76953 5.89642 5.97198 6.06802 6.12691 6.17990 6.20209 6.30227 6.39009 6.41440 6.49474 6.55443 7.03078 7.24821 7.49633 7.60285 7.80065 7.91150 7.99006 8.21520 9.16992 9.77137 10.42116 11.36656 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.002306 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.509486 B =12138.941704 C =13181.951792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.101 0.899 4 O -0.285 6.285 5 C 0.131 3.869 6 C -0.150 4.150 7 C -0.081 4.081 8 C -0.161 4.161 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.519 3.481 12 O -0.517 6.517 13 N -0.721 5.721 14 C 0.105 3.895 15 C 0.102 3.898 16 O -0.535 6.535 17 C -0.128 4.128 18 C 0.181 3.819 19 N -0.598 5.598 20 C -0.231 4.231 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.117 3.883 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.399 0.601 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.362 0.638 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.253 0.747 46 H 0.027 0.973 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 -2.943 -24.507 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 H 0.119 0.881 4 O -0.197 6.197 5 C 0.086 3.914 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.231 4.231 11 C 0.303 3.697 12 O -0.391 6.391 13 N -0.375 5.375 14 C -0.018 4.018 15 C 0.059 3.941 16 O -0.339 6.339 17 C -0.167 4.167 18 C 0.057 3.943 19 N -0.324 5.324 20 C -0.360 4.360 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.207 1.207 28 C -0.010 4.010 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.208 0.792 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.144 -4.100 -23.730 24.177 hybrid contribution -0.479 1.855 0.011 1.916 sum -2.623 -2.245 -23.719 23.969 Atomic orbital electron populations 1.22362 0.92417 1.04628 1.04050 1.22214 0.95845 0.97183 0.84161 0.88137 1.86211 1.80937 1.36884 1.15673 1.19095 0.95226 0.90388 0.86690 1.20495 1.03510 1.01594 0.91260 1.20991 0.97790 0.94020 0.97078 1.21088 1.02173 0.95870 0.98784 1.20973 0.97070 0.99453 0.92265 1.21338 1.07137 0.94316 1.00324 1.19989 0.80819 0.84943 0.83969 1.90752 1.36585 1.25399 1.86369 1.45852 1.54080 1.32229 1.05322 1.22101 1.00292 0.96737 0.82714 1.22735 0.81171 0.96557 0.93601 1.86663 1.17907 1.81303 1.48005 1.22914 0.99263 1.00276 0.94203 1.21138 1.01322 0.81235 0.90621 1.44334 1.86865 1.02708 0.98509 1.19009 1.44195 0.82406 0.90349 0.90536 1.24815 1.02046 0.97514 0.95947 1.69958 1.56596 1.27495 1.02575 0.86109 0.77597 0.83469 0.78489 1.21565 1.21622 1.20728 1.22136 0.97476 0.92335 0.89055 0.90502 0.90471 0.90011 0.85033 0.85333 0.85918 0.85694 0.85173 0.76599 0.90508 0.90155 0.79221 0.90879 0.90850 0.93097 0.93732 0.93662 0.95577 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.07 37.16 0.34 -0.94 16 2 C 0.07 0.65 2.65 -27.88 -0.07 0.57 16 3 H 0.10 0.80 6.31 -51.93 -0.33 0.47 16 4 O -0.28 -3.48 9.33 -39.35 -0.37 -3.85 16 5 C 0.13 1.39 6.60 -39.22 -0.26 1.13 16 6 C -0.15 -1.45 9.99 -39.43 -0.39 -1.84 16 7 C -0.08 -0.63 10.04 -39.60 -0.40 -1.02 16 8 C -0.16 -1.18 10.04 -39.56 -0.40 -1.58 16 9 C -0.08 -0.61 10.04 -39.60 -0.40 -1.00 16 10 C -0.21 -1.84 8.24 -39.44 -0.33 -2.17 16 11 C 0.52 6.61 7.23 -10.99 -0.08 6.53 16 12 O -0.52 -8.88 16.50 -14.35 -0.24 -9.12 16 13 N -0.72 -8.08 5.07 -60.29 -0.31 -8.38 16 14 C 0.11 1.43 4.88 -4.04 -0.02 1.41 16 15 C 0.10 1.65 0.95 -88.46 -0.08 1.56 16 16 O -0.54 -8.71 13.19 -35.23 -0.46 -9.18 16 17 C -0.13 -2.34 6.16 -24.89 -0.15 -2.49 16 18 C 0.18 4.37 5.37 -3.06 -0.02 4.35 16 19 N -0.60 -14.86 3.39 -170.07 -0.58 -15.43 16 20 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 21 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 24 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 C 0.12 2.22 5.98 -2.53 -0.02 2.21 16 29 H 0.08 0.48 6.91 -51.93 -0.36 0.12 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.42 7.55 -51.93 -0.39 0.03 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 34 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.90 5.43 -52.49 -0.29 0.61 16 37 H 0.40 3.48 6.72 -40.82 -0.27 3.20 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 40 H 0.36 4.27 8.07 45.56 0.37 4.63 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 43 H 0.05 1.39 7.38 -51.93 -0.38 1.00 16 44 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.03 0.50 8.04 -51.93 -0.42 0.09 16 47 H 0.04 0.65 8.02 -51.93 -0.42 0.24 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -35.18 382.56 -9.39 -44.56 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.22 Total: 5.13 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.53 Total: -0.04 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.31 Total: -50.10 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.07 Total: -22.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.18 -9.39 -44.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271221385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.435 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds