Wall clock time and date at job start Tue Mar 31 2020 18:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47031 * 2 1 4 4 O 1.42893 * 109.47407 * 240.00157 * 2 1 3 5 5 C 1.35905 * 117.00297 * 84.94782 * 4 2 1 6 6 C 1.38727 * 120.05435 * 174.27880 * 5 4 2 7 7 C 1.38149 * 119.94124 * 179.70100 * 6 5 4 8 8 C 1.38262 * 120.05628 * 0.59427 * 7 6 5 9 9 C 1.38272 * 120.10678 * 359.67829 * 8 7 6 10 10 C 1.38141 * 120.05785 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.46827 * 119.99668 * 2 1 3 12 12 O 1.21281 * 119.99938 * 120.00642 * 11 2 1 13 13 N 1.34776 * 120.00231 * 300.27598 * 11 2 1 14 14 C 1.46501 * 119.99619 * 179.72697 * 13 11 2 15 15 C 1.53008 * 109.46715 * 180.02562 * 14 13 11 16 16 O 1.42895 * 110.89136 * 61.11555 * 15 14 13 17 17 C 1.55156 * 111.00234 * 185.00167 * 15 14 13 18 18 C 1.54330 * 102.94250 * 153.57448 * 17 15 14 19 19 N 1.47026 * 107.26832 * 337.80445 * 18 17 15 20 20 C 1.36928 * 125.64446 * 178.96331 * 19 18 17 21 21 H 1.08006 * 120.00004 * 179.97438 * 20 19 18 22 22 C 1.38821 * 120.00478 * 359.97280 * 20 19 18 23 23 N 1.31616 * 119.99288 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00334 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46772 * 90.00170 * 24 22 20 26 26 H 1.48495 * 109.46983 * 210.00032 * 24 22 20 27 27 H 1.48504 * 109.47073 * 330.00637 * 24 22 20 28 28 C 1.47417 * 108.70427 * 358.94054 * 19 18 17 29 29 H 1.09006 * 109.46743 * 60.00213 * 1 2 3 30 30 H 1.09002 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47345 * 299.99982 * 1 2 3 32 32 H 1.07998 * 120.03112 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.97161 * 180.27442 * 7 6 5 34 34 H 1.08001 * 119.94833 * 179.70405 * 8 7 6 35 35 H 1.08002 * 119.96646 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.02501 * 179.97438 * 10 9 8 37 37 H 0.96993 * 119.99925 * 359.72961 * 13 11 2 38 38 H 1.08996 * 109.47187 * 299.99490 * 14 13 11 39 39 H 1.08998 * 109.47747 * 60.00609 * 14 13 11 40 40 H 0.96702 * 114.00136 * 300.70603 * 16 15 14 41 41 H 1.09001 * 110.71995 * 271.93318 * 17 15 14 42 42 H 1.08999 * 110.72549 * 35.03041 * 17 15 14 43 43 H 1.08997 * 109.88252 * 97.22422 * 18 17 15 44 44 H 1.08998 * 109.87984 * 218.22935 * 18 17 15 45 45 H 0.97002 * 119.99632 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.37174 * 265.28859 * 28 19 18 47 47 H 1.09004 * 110.37011 * 142.96618 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.1116 0.0624 -2.3044 6 6 2.6777 -0.4941 -3.4421 7 6 2.7778 0.2541 -4.5991 8 6 2.3256 1.5605 -4.6202 9 6 1.7661 2.1192 -3.4859 10 6 1.6582 1.3732 -2.3283 11 6 2.0323 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7021 -0.2531 2.4546 14 6 2.1855 -0.9472 3.6507 15 6 1.6704 -0.2295 4.9000 16 8 0.2419 -0.2343 4.9378 17 6 2.2630 -0.8602 6.1877 18 6 2.2289 0.3102 7.1931 19 7 2.1898 1.5553 6.4122 20 6 2.1319 2.8212 6.9311 21 1 2.1072 3.6751 6.2702 22 6 2.1048 3.0071 8.3065 23 7 2.1353 1.9665 9.1118 24 14 2.0265 4.7340 9.0143 25 1 0.6069 5.1363 9.1818 26 1 2.7072 4.7594 10.3338 27 1 2.7031 5.6790 8.0899 28 6 2.2238 1.2153 4.9782 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.0358 -1.5129 -3.4246 33 1 3.2144 -0.1802 -5.4863 34 1 2.4091 2.1454 -5.5243 35 1 1.4133 3.1398 -3.5051 36 1 1.2215 1.8103 -1.4425 37 1 1.1444 0.5355 2.5435 38 1 1.8217 -1.9747 3.6465 39 1 3.2755 -0.9477 3.6551 40 1 -0.1732 0.1936 4.1764 41 1 1.6406 -1.6850 6.5349 42 1 3.2858 -1.1961 6.0173 43 1 1.3388 0.2364 7.8179 44 1 3.1223 0.2890 7.8171 45 1 2.1168 2.0963 10.0729 46 1 3.2471 1.2503 4.6041 47 1 1.5884 1.8960 4.4116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271221385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:47 Heat of formation + Delta-G solvation = -87.089431 kcal Electronic energy + Delta-G solvation = -28651.618052 eV Core-core repulsion = 24606.813748 eV Total energy + Delta-G solvation = -4044.804304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75052 -40.76117 -39.81509 -38.24754 -36.78405 -35.47008 -34.06199 -33.25773 -31.77648 -31.31916 -30.59203 -29.64586 -27.50478 -26.04118 -24.97887 -23.70540 -23.07513 -22.22054 -21.47316 -21.21629 -19.43162 -19.07537 -18.78854 -17.51409 -17.33964 -16.91636 -16.71049 -16.70231 -16.22608 -16.04917 -15.77036 -15.61536 -15.34823 -14.97747 -14.93457 -14.38144 -14.32361 -14.09757 -13.91490 -13.81567 -13.47664 -13.30655 -13.24179 -12.93411 -12.83867 -12.75076 -12.43958 -12.36253 -12.11258 -12.08031 -12.00133 -11.79685 -11.78378 -11.67276 -11.00020 -10.85696 -10.68164 -10.28074 -9.93408 -9.18421 -8.88508 -7.84212 -5.19642 0.40397 0.48422 1.39547 1.46584 1.48637 1.50610 1.57036 2.49417 2.50857 2.85834 3.17486 3.33747 3.40298 3.48475 3.64587 3.70640 3.85264 3.92870 3.94676 3.97197 4.01648 4.30252 4.41391 4.46365 4.52619 4.58049 4.62412 4.65433 4.68140 4.77726 4.81178 4.93907 4.94915 5.07018 5.09479 5.12670 5.20753 5.36334 5.45041 5.49564 5.62279 5.63935 5.77015 5.84187 6.19404 6.26757 6.44362 6.83412 7.03973 7.09702 7.77389 8.41328 9.26522 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.002306 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.509486 B =12138.941704 C =13181.951792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.068 3.932 3 H 0.123 0.877 4 O -0.315 6.315 5 C 0.106 3.894 6 C -0.173 4.173 7 C -0.084 4.084 8 C -0.163 4.163 9 C -0.084 4.084 10 C -0.217 4.217 11 C 0.519 3.481 12 O -0.567 6.567 13 N -0.706 5.706 14 C 0.119 3.881 15 C 0.124 3.876 16 O -0.551 6.551 17 C -0.122 4.122 18 C 0.190 3.810 19 N -0.621 5.621 20 C -0.239 4.239 21 H 0.087 0.913 22 C -0.070 4.070 23 N -0.953 5.953 24 Si 0.979 3.021 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.266 1.266 28 C 0.112 3.888 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.415 0.585 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.384 0.616 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.245 0.755 46 H 0.034 0.966 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 -1.128 -27.110 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 H 0.140 0.860 4 O -0.228 6.228 5 C 0.062 3.938 6 C -0.192 4.192 7 C -0.102 4.102 8 C -0.181 4.181 9 C -0.102 4.102 10 C -0.235 4.235 11 C 0.305 3.695 12 O -0.445 6.445 13 N -0.361 5.361 14 C -0.005 4.005 15 C 0.082 3.918 16 O -0.358 6.358 17 C -0.161 4.161 18 C 0.064 3.936 19 N -0.347 5.347 20 C -0.368 4.368 21 H 0.105 0.895 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.808 3.192 25 H -0.213 1.213 26 H -0.225 1.225 27 H -0.191 1.191 28 C -0.014 4.014 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.143 0.857 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.252 0.748 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.233 0.767 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.011 -2.247 -26.393 26.659 hybrid contribution -0.217 1.305 0.725 1.509 sum -3.227 -0.942 -25.669 25.888 Atomic orbital electron populations 1.22379 0.90256 1.04386 1.05887 1.22329 0.97308 0.97282 0.82223 0.85962 1.86162 1.81706 1.38306 1.16637 1.19345 0.96697 0.91384 0.86410 1.20697 1.04454 1.01868 0.92175 1.21285 0.97445 0.94327 0.97095 1.21465 1.01125 0.95758 0.99732 1.21349 0.96490 1.00496 0.91869 1.21562 1.06896 0.93558 1.01495 1.20556 0.79768 0.84272 0.84925 1.90732 1.38928 1.27744 1.87081 1.45656 1.53753 1.32357 1.04327 1.21782 0.99954 0.96552 0.82223 1.22368 0.81294 0.94580 0.93600 1.86632 1.17711 1.81681 1.49744 1.22796 1.01147 0.98222 0.93894 1.20821 0.97553 0.83641 0.91538 1.44626 1.86725 1.02153 1.01189 1.19470 1.42641 0.83953 0.90771 0.89487 1.25695 1.02785 1.01204 0.96611 1.70198 1.58298 1.29486 1.02195 0.85065 0.77440 0.79364 0.77369 1.21306 1.22459 1.19074 1.22379 0.98410 0.94514 0.86088 0.89284 0.91771 0.87498 0.85730 0.83262 0.83516 0.83264 0.83495 0.74783 0.90352 0.90519 0.76737 0.89955 0.88829 0.97379 0.97394 0.94527 0.94875 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 9.07 71.98 0.65 -1.37 16 2 C 0.07 1.21 2.65 29.85 0.08 1.29 16 3 H 0.12 1.59 6.31 -2.39 -0.02 1.58 16 4 O -0.31 -7.58 9.33 -73.45 -0.69 -8.27 16 5 C 0.11 2.17 6.60 22.50 0.15 2.32 16 6 C -0.17 -3.32 9.99 22.37 0.22 -3.10 16 7 C -0.08 -1.18 10.04 22.25 0.22 -0.95 16 8 C -0.16 -1.96 10.04 22.28 0.22 -1.74 16 9 C -0.08 -1.04 10.04 22.25 0.22 -0.82 16 10 C -0.22 -3.28 8.24 22.36 0.18 -3.09 16 11 C 0.52 12.44 7.23 87.66 0.63 13.08 16 12 O -0.57 -19.35 16.50 16.00 0.26 -19.09 16 13 N -0.71 -13.99 5.07 -463.05 -2.35 -16.33 16 14 C 0.12 2.99 4.88 86.38 0.42 3.41 16 15 C 0.12 3.77 0.95 -9.40 -0.01 3.76 16 16 O -0.55 -16.64 13.19 -148.98 -1.96 -18.60 16 17 C -0.12 -4.40 6.16 31.78 0.20 -4.20 16 18 C 0.19 9.40 5.37 86.73 0.47 9.86 16 19 N -0.62 -30.80 3.39 -691.97 -2.35 -33.14 16 20 C -0.24 -13.05 10.28 84.04 0.86 -12.19 16 21 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 22 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 23 N -0.95 -57.69 10.31 21.65 0.22 -57.47 16 24 Si 0.98 45.23 29.55 68.60 2.03 47.26 16 25 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 C 0.11 4.02 5.98 86.86 0.52 4.54 16 29 H 0.09 0.86 6.91 -2.38 -0.02 0.84 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 0.68 7.55 -2.39 -0.02 0.66 16 32 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.15 1.56 5.43 -2.91 -0.02 1.55 16 37 H 0.41 5.68 6.72 -92.71 -0.62 5.06 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.08 2.05 8.13 -2.39 -0.02 2.03 16 40 H 0.38 7.72 8.07 -74.06 -0.60 7.12 16 41 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.09 2.98 8.03 -2.39 -0.02 2.96 16 43 H 0.01 0.45 7.38 -2.39 -0.02 0.44 16 44 H 0.01 0.44 7.50 -2.39 -0.02 0.42 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.03 1.19 8.04 -2.39 -0.02 1.17 16 47 H 0.06 1.88 8.02 -2.38 -0.02 1.86 16 Total: -1.00 -79.88 382.56 0.46 -79.42 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.22 Total: 18.94 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.52 Total: 7.30 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -4.47 Total: -106.95 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -2.39 Total: -45.96 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -79.88 0.46 -79.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271221385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.669 kcal (2) G-P(sol) polarization free energy of solvation -79.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds