Wall clock time and date at job start Tue Mar 31 2020 18:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47322 * 2 1 4 4 O 1.42902 * 109.46840 * 120.00500 * 2 1 3 5 5 C 1.35897 * 116.99948 * 275.13382 * 4 2 1 6 6 C 1.38739 * 120.05186 * 4.94090 * 5 4 2 7 7 C 1.38156 * 119.93722 * 179.69575 * 6 5 4 8 8 C 1.38263 * 120.05540 * 0.59740 * 7 6 5 9 9 C 1.38262 * 120.11223 * 359.67736 * 8 7 6 10 10 C 1.38146 * 120.05846 * 0.02562 * 9 8 7 11 11 C 1.50708 * 109.46855 * 240.00173 * 2 1 3 12 12 O 1.21276 * 119.99670 * 244.99679 * 11 2 1 13 13 N 1.34774 * 119.99878 * 65.00451 * 11 2 1 14 14 C 1.46500 * 119.99655 * 179.97438 * 13 11 2 15 15 C 1.53004 * 109.46855 * 180.02562 * 14 13 11 16 16 O 1.42899 * 110.91701 * 61.09909 * 15 14 13 17 17 C 1.55157 * 111.00321 * 185.00285 * 15 14 13 18 18 C 1.54328 * 102.94204 * 153.57548 * 17 15 14 19 19 N 1.47020 * 107.27016 * 337.80232 * 18 17 15 20 20 C 1.36941 * 125.64609 * 178.97489 * 19 18 17 21 21 H 1.07994 * 119.99707 * 174.78718 * 20 19 18 22 22 C 1.38805 * 119.99968 * 354.79787 * 20 19 18 23 23 N 1.31623 * 120.00197 * 7.05932 * 22 20 19 24 24 Si 1.86803 * 120.00090 * 187.06477 * 22 20 19 25 25 H 1.48495 * 109.47020 * 94.97906 * 24 22 20 26 26 H 1.48496 * 109.47323 * 214.98231 * 24 22 20 27 27 H 1.48501 * 109.46903 * 334.98160 * 24 22 20 28 28 C 1.47425 * 108.70386 * 358.94259 * 19 18 17 29 29 H 1.08996 * 109.47114 * 299.99660 * 1 2 3 30 30 H 1.09002 * 109.47099 * 59.99636 * 1 2 3 31 31 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.07990 * 120.03201 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.96691 * 180.31973 * 7 6 5 34 34 H 1.07995 * 119.94109 * 179.69876 * 8 7 6 35 35 H 1.08001 * 119.96741 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.02662 * 180.02562 * 10 9 8 37 37 H 0.96998 * 120.00357 * 359.97438 * 13 11 2 38 38 H 1.08998 * 109.47429 * 60.00095 * 14 13 11 39 39 H 1.08999 * 109.47302 * 299.99340 * 14 13 11 40 40 H 0.96707 * 113.99349 * 303.89879 * 16 15 14 41 41 H 1.08992 * 110.72129 * 35.20817 * 17 15 14 42 42 H 1.08998 * 110.71537 * 271.93802 * 17 15 14 43 43 H 1.08998 * 109.88060 * 97.22271 * 18 17 15 44 44 H 1.09003 * 109.87494 * 218.23128 * 18 17 15 45 45 H 0.96999 * 119.99972 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.36617 * 142.96601 * 28 19 18 47 47 H 1.09001 * 110.36667 * 265.17582 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 2.1097 0.0617 2.3048 6 6 1.6644 1.3755 2.3260 7 6 1.7650 2.1190 3.4861 8 6 2.3201 1.5588 4.6217 9 6 2.7699 0.2515 4.6014 10 6 2.6660 -0.4982 3.4457 11 6 2.0323 -0.7104 -1.2306 12 8 2.6529 -1.7466 -1.1216 13 7 1.7919 -0.1941 -2.4520 14 6 2.2807 -0.8844 -3.6482 15 6 1.8764 -0.0938 -4.8942 16 8 2.4516 1.2142 -4.8774 17 6 2.2669 -0.8565 -6.1877 18 6 1.2467 -0.3316 -7.2198 19 7 0.0917 0.1825 -6.4693 20 6 -1.0253 0.7549 -7.0171 21 1 -1.8582 1.0258 -6.3853 22 6 -1.0870 0.9867 -8.3842 23 7 -0.1356 0.5326 -9.1724 24 14 -2.5202 1.9432 -9.1057 25 1 -2.1439 3.3736 -9.2383 26 1 -2.8584 1.3943 -10.4433 27 1 -3.6975 1.8222 -8.2088 28 6 0.3349 -0.0210 -5.0296 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2354 1.8151 1.4378 33 1 1.4137 3.1401 3.5045 34 1 2.4023 2.1432 5.5261 35 1 3.2027 -0.1839 5.4900 36 1 3.0171 -1.5194 3.4306 37 1 1.2953 0.6345 -2.5392 38 1 1.8464 -1.8831 -3.6943 39 1 3.3670 -0.9622 -3.6044 40 1 2.2351 1.7288 -4.0878 41 1 2.1570 -1.9320 -6.0493 42 1 3.2841 -0.6075 -6.4899 43 1 1.6934 0.4700 -7.8079 44 1 0.9334 -1.1430 -7.8769 45 1 -0.1786 0.6949 -10.1277 46 1 -0.0570 0.8192 -4.4562 47 1 -0.1215 -0.9528 -4.6958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271221386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:51 Heat of formation + Delta-G solvation = -61.989516 kcal Electronic energy + Delta-G solvation = -28646.529740 eV Core-core repulsion = 24602.813850 eV Total energy + Delta-G solvation = -4043.715890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.93014 -39.75817 -38.55316 -37.49739 -35.19073 -34.31342 -32.64856 -32.06435 -31.14016 -30.00127 -29.59109 -28.23322 -25.93799 -24.93808 -23.67301 -23.02189 -22.29953 -20.77442 -20.15270 -19.87589 -18.74792 -18.03302 -16.96383 -16.52886 -16.28008 -16.02371 -15.96374 -15.31373 -15.12470 -14.75467 -14.68248 -14.34953 -14.10225 -13.85679 -13.73726 -13.51469 -13.38678 -13.02815 -12.86429 -12.72837 -12.31663 -12.17005 -11.97125 -11.90804 -11.74896 -11.42124 -11.13930 -11.03186 -10.92791 -10.79822 -10.38032 -10.24307 -10.13921 -9.87499 -9.78840 -9.48982 -9.34831 -9.23426 -8.59949 -8.53511 -6.86895 -5.76266 -3.08823 0.98505 1.10193 2.31744 2.37640 3.31797 3.37402 3.42100 3.44679 3.45059 4.21711 4.37114 4.42874 4.44804 4.50843 4.52771 4.57217 4.78659 4.79887 5.01357 5.03871 5.07812 5.19319 5.25466 5.31954 5.33399 5.47590 5.59445 5.65700 5.70086 5.76622 5.89369 5.96249 6.05622 6.12423 6.17187 6.19080 6.31077 6.39308 6.40497 6.49616 6.55011 7.02224 7.24192 7.48642 7.61747 7.79939 7.91095 7.98443 8.21560 9.16748 9.77285 10.42639 11.35836 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.002225 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.161210 B =12583.991033 C =13384.226803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 H 0.099 0.901 4 O -0.285 6.285 5 C 0.132 3.868 6 C -0.213 4.213 7 C -0.080 4.080 8 C -0.161 4.161 9 C -0.081 4.081 10 C -0.150 4.150 11 C 0.519 3.481 12 O -0.516 6.516 13 N -0.721 5.721 14 C 0.105 3.895 15 C 0.102 3.898 16 O -0.535 6.535 17 C -0.128 4.128 18 C 0.180 3.820 19 N -0.598 5.598 20 C -0.232 4.232 21 H 0.077 0.923 22 C -0.005 4.005 23 N -0.917 5.917 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.118 3.882 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.399 0.601 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.362 0.638 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.043 0.957 45 H 0.253 0.747 46 H 0.038 0.962 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 1.836 24.754 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.007 3.993 3 H 0.117 0.883 4 O -0.197 6.197 5 C 0.086 3.914 6 C -0.232 4.232 7 C -0.098 4.098 8 C -0.179 4.179 9 C -0.099 4.099 10 C -0.169 4.169 11 C 0.303 3.697 12 O -0.391 6.391 13 N -0.375 5.375 14 C -0.019 4.019 15 C 0.060 3.940 16 O -0.339 6.339 17 C -0.167 4.167 18 C 0.056 3.944 19 N -0.324 5.324 20 C -0.360 4.360 21 H 0.095 0.905 22 C -0.202 4.202 23 N -0.564 5.564 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.009 4.009 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.234 0.766 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.208 0.792 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.422 0.703 23.962 24.578 hybrid contribution -1.334 1.324 -0.011 1.880 sum 4.088 2.027 23.951 24.382 Atomic orbital electron populations 1.22355 0.92250 1.04779 1.04116 1.22211 0.95987 0.96986 0.84121 0.88308 1.86219 1.80878 1.36947 1.15655 1.19103 0.95237 0.90346 0.86696 1.21340 1.07234 0.94292 1.00288 1.20971 0.97069 0.99480 0.92240 1.21083 1.02197 0.95885 0.98777 1.20990 0.97769 0.94004 0.97095 1.20496 1.03636 1.01531 0.91221 1.19992 0.80149 0.85606 0.83967 1.90750 1.39160 1.22850 1.86300 1.45854 1.58067 1.28111 1.05511 1.22107 1.00152 0.96887 0.82754 1.22734 0.94571 0.83188 0.93549 1.86676 1.75056 1.26433 1.45695 1.22911 1.01467 0.98194 0.94090 1.21146 0.84988 0.97626 0.90658 1.44331 1.18532 1.70864 0.98676 1.19007 0.92982 1.32852 0.91206 0.90504 1.24831 0.98453 1.00820 0.96087 1.69971 1.33938 1.48886 1.03579 0.86119 0.81335 0.79894 0.78515 1.21578 1.21732 1.20666 1.22127 0.91721 0.98186 0.88906 0.90512 0.89866 0.90425 0.85171 0.85706 0.85926 0.85335 0.85029 0.76572 0.90094 0.90529 0.79248 0.90841 0.90870 0.92973 0.93919 0.93659 0.94409 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 9.13 37.16 0.34 -1.06 16 2 C 0.07 0.66 2.64 -27.88 -0.07 0.58 16 3 H 0.10 0.73 6.29 -51.93 -0.33 0.40 16 4 O -0.28 -3.47 9.34 -39.28 -0.37 -3.83 16 5 C 0.13 1.37 6.60 -39.22 -0.26 1.12 16 6 C -0.21 -1.80 8.25 -39.43 -0.33 -2.13 16 7 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 8 C -0.16 -1.15 10.04 -39.56 -0.40 -1.55 16 9 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 10 C -0.15 -1.43 9.99 -39.43 -0.39 -1.83 16 11 C 0.52 6.58 7.18 -10.98 -0.08 6.50 16 12 O -0.52 -8.84 16.51 -14.30 -0.24 -9.07 16 13 N -0.72 -8.04 5.10 -60.29 -0.31 -8.35 16 14 C 0.10 1.42 4.88 -4.04 -0.02 1.40 16 15 C 0.10 1.65 0.96 -88.47 -0.09 1.57 16 16 O -0.53 -8.78 13.20 -35.23 -0.47 -9.24 16 17 C -0.13 -2.34 6.16 -24.89 -0.15 -2.49 16 18 C 0.18 4.34 5.38 -3.06 -0.02 4.32 16 19 N -0.60 -14.84 3.39 -170.07 -0.58 -15.42 16 20 C -0.23 -6.35 10.27 -15.06 -0.15 -6.50 16 21 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 22 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 23 N -0.92 -26.79 10.36 55.49 0.57 -26.21 16 24 Si 0.91 21.81 29.56 -169.99 -5.02 16.79 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.12 2.23 5.97 -2.53 -0.02 2.21 16 29 H 0.08 0.52 6.94 -51.93 -0.36 0.16 16 30 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.13 0.87 5.44 -52.49 -0.29 0.58 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.40 3.46 7.08 -40.82 -0.29 3.17 16 38 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.36 4.30 8.01 45.56 0.37 4.66 16 41 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.05 1.42 7.30 -51.93 -0.38 1.04 16 44 H 0.04 1.12 7.61 -51.93 -0.40 0.73 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 47 H 0.03 0.49 8.04 -51.93 -0.42 0.07 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -35.16 383.41 -9.41 -44.57 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.26 Total: 5.07 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.52 Total: -0.09 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.31 Total: -49.98 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.07 Total: -22.15 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.16 -9.41 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271221386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.415 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds