Wall clock time and date at job start Tue Mar 31 2020 18:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47322 * 2 1 4 4 O 1.42902 * 109.46840 * 120.00500 * 2 1 3 5 5 C 1.35897 * 116.99948 * 275.13382 * 4 2 1 6 6 C 1.38739 * 120.05186 * 4.94090 * 5 4 2 7 7 C 1.38156 * 119.93722 * 179.69575 * 6 5 4 8 8 C 1.38263 * 120.05540 * 0.59740 * 7 6 5 9 9 C 1.38262 * 120.11223 * 359.67736 * 8 7 6 10 10 C 1.38146 * 120.05846 * 0.02562 * 9 8 7 11 11 C 1.50708 * 109.46855 * 240.00173 * 2 1 3 12 12 O 1.21276 * 119.99670 * 244.99679 * 11 2 1 13 13 N 1.34774 * 119.99878 * 65.00451 * 11 2 1 14 14 C 1.46500 * 119.99655 * 179.97438 * 13 11 2 15 15 C 1.53004 * 109.46855 * 180.02562 * 14 13 11 16 16 O 1.42899 * 110.91701 * 61.09909 * 15 14 13 17 17 C 1.55157 * 111.00321 * 185.00285 * 15 14 13 18 18 C 1.54328 * 102.94204 * 153.57548 * 17 15 14 19 19 N 1.47020 * 107.27016 * 337.80232 * 18 17 15 20 20 C 1.36941 * 125.64609 * 178.97489 * 19 18 17 21 21 H 1.07994 * 119.99707 * 174.78718 * 20 19 18 22 22 C 1.38805 * 119.99968 * 354.79787 * 20 19 18 23 23 N 1.31623 * 120.00197 * 7.05932 * 22 20 19 24 24 Si 1.86803 * 120.00090 * 187.06477 * 22 20 19 25 25 H 1.48495 * 109.47020 * 94.97906 * 24 22 20 26 26 H 1.48496 * 109.47323 * 214.98231 * 24 22 20 27 27 H 1.48501 * 109.46903 * 334.98160 * 24 22 20 28 28 C 1.47425 * 108.70386 * 358.94259 * 19 18 17 29 29 H 1.08996 * 109.47114 * 299.99660 * 1 2 3 30 30 H 1.09002 * 109.47099 * 59.99636 * 1 2 3 31 31 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.07990 * 120.03201 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.96691 * 180.31973 * 7 6 5 34 34 H 1.07995 * 119.94109 * 179.69876 * 8 7 6 35 35 H 1.08001 * 119.96741 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.02662 * 180.02562 * 10 9 8 37 37 H 0.96998 * 120.00357 * 359.97438 * 13 11 2 38 38 H 1.08998 * 109.47429 * 60.00095 * 14 13 11 39 39 H 1.08999 * 109.47302 * 299.99340 * 14 13 11 40 40 H 0.96707 * 113.99349 * 303.89879 * 16 15 14 41 41 H 1.08992 * 110.72129 * 35.20817 * 17 15 14 42 42 H 1.08998 * 110.71537 * 271.93802 * 17 15 14 43 43 H 1.08998 * 109.88060 * 97.22271 * 18 17 15 44 44 H 1.09003 * 109.87494 * 218.23128 * 18 17 15 45 45 H 0.96999 * 119.99972 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.36617 * 142.96601 * 28 19 18 47 47 H 1.09001 * 110.36667 * 265.17582 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 2.1097 0.0617 2.3048 6 6 1.6644 1.3755 2.3260 7 6 1.7650 2.1190 3.4861 8 6 2.3201 1.5588 4.6217 9 6 2.7699 0.2515 4.6014 10 6 2.6660 -0.4982 3.4457 11 6 2.0323 -0.7104 -1.2306 12 8 2.6529 -1.7466 -1.1216 13 7 1.7919 -0.1941 -2.4520 14 6 2.2807 -0.8844 -3.6482 15 6 1.8764 -0.0938 -4.8942 16 8 2.4516 1.2142 -4.8774 17 6 2.2669 -0.8565 -6.1877 18 6 1.2467 -0.3316 -7.2198 19 7 0.0917 0.1825 -6.4693 20 6 -1.0253 0.7549 -7.0171 21 1 -1.8582 1.0258 -6.3853 22 6 -1.0870 0.9867 -8.3842 23 7 -0.1356 0.5326 -9.1724 24 14 -2.5202 1.9432 -9.1057 25 1 -2.1439 3.3736 -9.2383 26 1 -2.8584 1.3943 -10.4433 27 1 -3.6975 1.8222 -8.2088 28 6 0.3349 -0.0210 -5.0296 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2354 1.8151 1.4378 33 1 1.4137 3.1401 3.5045 34 1 2.4023 2.1432 5.5261 35 1 3.2027 -0.1839 5.4900 36 1 3.0171 -1.5194 3.4306 37 1 1.2953 0.6345 -2.5392 38 1 1.8464 -1.8831 -3.6943 39 1 3.3670 -0.9622 -3.6044 40 1 2.2351 1.7288 -4.0878 41 1 2.1570 -1.9320 -6.0493 42 1 3.2841 -0.6075 -6.4899 43 1 1.6934 0.4700 -7.8079 44 1 0.9334 -1.1430 -7.8769 45 1 -0.1786 0.6949 -10.1277 46 1 -0.0570 0.8192 -4.4562 47 1 -0.1215 -0.9528 -4.6958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271221386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:50 Heat of formation + Delta-G solvation = -87.093627 kcal Electronic energy + Delta-G solvation = -28647.618336 eV Core-core repulsion = 24602.813850 eV Total energy + Delta-G solvation = -4044.804486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.75028 -40.76154 -39.81230 -38.24694 -36.78854 -35.45970 -34.06078 -33.26276 -31.76939 -31.32209 -30.58776 -29.67082 -27.50451 -26.04436 -24.97486 -23.70212 -23.07014 -22.20846 -21.47796 -21.22549 -19.42457 -19.08232 -18.78330 -17.50661 -17.33598 -16.87995 -16.70562 -16.69364 -16.26028 -16.11860 -15.69809 -15.64944 -15.32222 -15.04566 -14.83350 -14.43335 -14.32979 -14.10116 -13.92884 -13.79782 -13.48692 -13.31271 -13.23374 -12.91448 -12.85539 -12.77434 -12.43662 -12.36563 -12.09666 -12.08138 -11.99655 -11.80800 -11.78910 -11.67168 -10.98964 -10.86957 -10.65722 -10.28513 -9.92937 -9.18017 -8.87691 -7.85398 -5.19388 0.40843 0.48921 1.40284 1.46564 1.48604 1.48760 1.57155 2.49462 2.50988 2.86186 3.17507 3.32039 3.40704 3.49152 3.64838 3.70297 3.83938 3.93327 3.94974 3.97027 4.02146 4.30679 4.41283 4.46203 4.53000 4.57698 4.62491 4.64456 4.68013 4.77549 4.81805 4.94159 4.95456 5.06725 5.09700 5.12238 5.20268 5.36755 5.45342 5.49992 5.62776 5.64129 5.77025 5.84539 6.19617 6.26503 6.44712 6.83089 7.03743 7.09647 7.77648 8.41977 9.25910 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.002225 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.161210 B =12583.991033 C =13384.226803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.070 3.930 3 H 0.128 0.872 4 O -0.315 6.315 5 C 0.106 3.894 6 C -0.216 4.216 7 C -0.084 4.084 8 C -0.163 4.163 9 C -0.084 4.084 10 C -0.174 4.174 11 C 0.519 3.481 12 O -0.566 6.566 13 N -0.707 5.707 14 C 0.119 3.881 15 C 0.124 3.876 16 O -0.551 6.551 17 C -0.122 4.122 18 C 0.188 3.812 19 N -0.621 5.621 20 C -0.240 4.240 21 H 0.087 0.913 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.978 3.022 25 H -0.288 1.288 26 H -0.298 1.298 27 H -0.264 1.264 28 C 0.112 3.888 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.415 0.585 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.383 0.617 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.009 0.991 44 H 0.006 0.994 45 H 0.246 0.754 46 H 0.059 0.941 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 3.727 27.417 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.010 3.990 3 H 0.145 0.855 4 O -0.228 6.228 5 C 0.061 3.939 6 C -0.235 4.235 7 C -0.101 4.101 8 C -0.181 4.181 9 C -0.102 4.102 10 C -0.192 4.192 11 C 0.305 3.695 12 O -0.444 6.444 13 N -0.362 5.362 14 C -0.005 4.005 15 C 0.081 3.919 16 O -0.358 6.358 17 C -0.160 4.160 18 C 0.063 3.937 19 N -0.347 5.347 20 C -0.369 4.369 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.600 5.600 24 Si 0.806 3.194 25 H -0.215 1.215 26 H -0.225 1.225 27 H -0.189 1.189 28 C -0.013 4.013 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.142 0.858 37 H 0.252 0.748 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.232 0.768 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.027 0.973 44 H 0.024 0.976 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.627 2.633 26.687 27.213 hybrid contribution -1.080 0.753 -0.740 1.511 sum 3.547 3.386 25.946 26.406 Atomic orbital electron populations 1.22362 0.90684 1.04197 1.05759 1.22310 0.96976 0.97455 0.82218 0.85517 1.86171 1.81616 1.38412 1.16642 1.19353 0.96758 0.91371 0.86373 1.21566 1.06929 0.93480 1.01499 1.21351 0.96433 1.00546 0.91813 1.21462 1.01127 0.95747 0.99748 1.21281 0.97444 0.94337 0.97096 1.20692 1.04613 1.01776 0.92150 1.20550 0.79075 0.84963 0.84911 1.90731 1.41509 1.25159 1.87011 1.45658 1.57651 1.28331 1.04516 1.21787 1.00235 0.96286 0.82238 1.22374 0.92424 0.83466 0.93601 1.86646 1.75008 1.26670 1.47515 1.22795 1.00015 0.99598 0.93638 1.20834 0.86135 0.95030 0.91689 1.44626 1.18001 1.70684 1.01379 1.19459 0.94042 1.31788 0.91581 0.89488 1.25701 1.01297 1.02371 0.96810 1.70205 1.36018 1.50529 1.03232 0.85070 0.78884 0.78061 0.77388 1.21542 1.22530 1.18853 1.22369 0.93861 0.99179 0.85898 0.89138 0.87883 0.92140 0.83415 0.83210 0.83524 0.83304 0.85791 0.74758 0.90397 0.90374 0.76772 0.88773 0.89975 0.97262 0.97571 0.94511 0.92241 0.94804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.13 71.98 0.66 -1.64 16 2 C 0.07 1.23 2.64 29.85 0.08 1.31 16 3 H 0.13 1.47 6.29 -2.39 -0.02 1.46 16 4 O -0.31 -7.54 9.34 -73.40 -0.69 -8.23 16 5 C 0.11 2.13 6.60 22.51 0.15 2.28 16 6 C -0.22 -3.14 8.25 22.37 0.18 -2.95 16 7 C -0.08 -0.98 10.04 22.26 0.22 -0.76 16 8 C -0.16 -1.88 10.04 22.28 0.22 -1.66 16 9 C -0.08 -1.15 10.04 22.25 0.22 -0.92 16 10 C -0.17 -3.27 9.99 22.36 0.22 -3.05 16 11 C 0.52 12.37 7.18 87.66 0.63 13.00 16 12 O -0.57 -19.23 16.51 15.97 0.26 -18.97 16 13 N -0.71 -13.91 5.10 -463.06 -2.36 -16.27 16 14 C 0.12 2.96 4.88 86.38 0.42 3.39 16 15 C 0.12 3.76 0.96 -9.40 -0.01 3.75 16 16 O -0.55 -16.82 13.20 -148.98 -1.97 -18.79 16 17 C -0.12 -4.39 6.16 31.78 0.20 -4.19 16 18 C 0.19 9.33 5.38 86.73 0.47 9.80 16 19 N -0.62 -30.77 3.39 -691.97 -2.35 -33.12 16 20 C -0.24 -13.07 10.27 84.03 0.86 -12.21 16 21 H 0.09 4.44 7.84 -2.91 -0.02 4.42 16 22 C -0.07 -3.89 5.48 84.86 0.46 -3.43 16 23 N -0.95 -57.62 10.36 21.65 0.22 -57.40 16 24 Si 0.98 45.23 29.56 68.60 2.03 47.26 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 28 C 0.11 4.03 5.97 86.86 0.52 4.55 16 29 H 0.09 0.97 6.94 -2.39 -0.02 0.96 16 30 H 0.10 0.93 7.92 -2.39 -0.02 0.91 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.15 1.46 5.44 -2.92 -0.02 1.44 16 33 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 37 H 0.41 5.65 7.08 -92.71 -0.66 5.00 16 38 H 0.08 2.06 8.13 -2.39 -0.02 2.04 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.38 7.82 8.01 -74.05 -0.59 7.22 16 41 H 0.09 2.99 8.03 -2.39 -0.02 2.97 16 42 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.01 0.52 7.30 -2.39 -0.02 0.50 16 44 H 0.01 0.34 7.61 -2.39 -0.02 0.32 16 45 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 46 H 0.06 1.88 8.02 -2.38 -0.02 1.86 16 47 H 0.03 1.20 8.04 -2.39 -0.02 1.18 16 Total: -1.00 -79.87 383.41 0.41 -79.46 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -0.25 Total: 18.81 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.51 Total: 7.25 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -4.49 Total: -106.80 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -2.39 Total: -45.98 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -79.87 0.41 -79.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271221386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.635 kcal (2) G-P(sol) polarization free energy of solvation -79.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds