Wall clock time and date at job start Tue Mar 31 2020 18:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46759 * 2 1 4 4 O 1.42897 * 109.47342 * 120.00784 * 2 1 3 5 5 C 1.35902 * 116.99645 * 275.13806 * 4 2 1 6 6 C 1.38734 * 120.05667 * 4.93441 * 5 4 2 7 7 C 1.38141 * 119.94270 * 179.70077 * 6 5 4 8 8 C 1.38268 * 120.05835 * 0.60092 * 7 6 5 9 9 C 1.38268 * 120.10703 * 359.67793 * 8 7 6 10 10 C 1.38145 * 120.05828 * 0.02562 * 9 8 7 11 11 C 1.50707 * 109.46826 * 240.00729 * 2 1 3 12 12 O 1.21280 * 119.99738 * 244.99873 * 11 2 1 13 13 N 1.34777 * 120.00166 * 64.99533 * 11 2 1 14 14 C 1.46503 * 119.99744 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.46935 * 180.02562 * 14 13 11 16 16 O 1.42904 * 110.63934 * 298.31179 * 15 14 13 17 17 C 1.55157 * 110.72205 * 174.97476 * 15 14 13 18 18 C 1.54909 * 101.58031 * 206.13642 * 17 15 14 19 19 N 1.47425 * 104.83571 * 37.00732 * 18 17 15 20 20 C 1.36938 * 125.64583 * 155.91951 * 19 18 17 21 21 H 1.07997 * 120.00125 * 5.12783 * 20 19 18 22 22 C 1.38813 * 119.99487 * 185.13570 * 20 19 18 23 23 N 1.31614 * 120.00112 * 352.92165 * 22 20 19 24 24 Si 1.86804 * 119.99707 * 172.92892 * 22 20 19 25 25 H 1.48495 * 109.46996 * 94.98353 * 24 22 20 26 26 H 1.48501 * 109.46671 * 214.98130 * 24 22 20 27 27 H 1.48497 * 109.47197 * 334.97935 * 24 22 20 28 28 C 1.47019 * 108.70123 * 335.87240 * 19 18 17 29 29 H 1.09001 * 109.46759 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46509 * 299.99182 * 1 2 3 31 31 H 1.08994 * 109.47529 * 59.99540 * 1 2 3 32 32 H 1.07999 * 120.02505 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.97530 * 180.27518 * 7 6 5 34 34 H 1.07992 * 119.94595 * 179.70062 * 8 7 6 35 35 H 1.08006 * 119.97349 * 180.02562 * 9 8 7 36 36 H 1.07998 * 120.02773 * 180.02562 * 10 9 8 37 37 H 0.97002 * 119.99795 * 0.02562 * 13 11 2 38 38 H 1.08997 * 109.46918 * 59.99905 * 14 13 11 39 39 H 1.08998 * 109.46738 * 300.00117 * 14 13 11 40 40 H 0.96701 * 114.00086 * 61.68831 * 16 15 14 41 41 H 1.09002 * 110.99804 * 324.20596 * 17 15 14 42 42 H 1.08994 * 111.00297 * 88.05891 * 17 15 14 43 43 H 1.09001 * 110.36797 * 155.84968 * 18 17 15 44 44 H 1.09000 * 110.36371 * 278.16543 * 18 17 15 45 45 H 0.97007 * 120.00121 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.87911 * 241.64336 * 28 19 18 47 47 H 1.08996 * 109.88406 * 120.48044 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.1098 0.0617 2.3048 6 6 1.6645 1.3754 2.3260 7 6 1.7651 2.1189 3.4860 8 6 2.3204 1.5588 4.6216 9 6 2.7702 0.2515 4.6013 10 6 2.6663 -0.4982 3.4456 11 6 2.0323 -0.7103 -1.2306 12 8 2.6529 -1.7466 -1.1218 13 7 1.7918 -0.1940 -2.4521 14 6 2.2796 -0.8848 -3.6484 15 6 1.8754 -0.0942 -4.8943 16 8 0.4526 -0.0088 -4.9971 17 6 2.4846 -0.7320 -6.1708 18 6 2.5626 0.4886 -7.1214 19 7 2.9258 1.6220 -6.2514 20 6 3.5490 2.7719 -6.6572 21 1 3.7421 2.9401 -7.7064 22 6 3.9328 3.7211 -5.7199 23 7 3.5761 3.5841 -4.4604 24 14 4.9555 5.1931 -6.2462 25 1 4.0597 6.3446 -6.5230 26 1 5.9018 5.5522 -5.1595 27 1 5.7180 4.8525 -7.4741 28 6 2.5070 1.3138 -4.8763 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.2355 1.8151 1.4377 33 1 1.4145 3.1402 3.5044 34 1 2.4025 2.1432 5.5260 35 1 3.2033 -0.1840 5.4898 36 1 3.0175 -1.5194 3.4304 37 1 1.2957 0.6350 -2.5391 38 1 1.8446 -1.8832 -3.6941 39 1 3.3659 -0.9634 -3.6049 40 1 0.0317 0.4508 -4.2577 41 1 3.4773 -1.1352 -5.9704 42 1 1.8266 -1.5010 -6.5755 43 1 3.3301 0.3309 -7.8792 44 1 1.5952 0.6659 -7.5914 45 1 3.8446 4.2472 -3.8053 46 1 1.7723 2.0453 -4.5398 47 1 3.3727 1.3233 -4.2141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271221387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:54 Heat of formation + Delta-G solvation = -64.378134 kcal Electronic energy + Delta-G solvation = -29082.426779 eV Core-core repulsion = 25038.607310 eV Total energy + Delta-G solvation = -4043.819468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74297 -39.58714 -38.46597 -37.33255 -35.13541 -34.15509 -32.50841 -32.17100 -30.99569 -29.86892 -29.43982 -27.98119 -26.02788 -24.82421 -23.63588 -22.88057 -22.13975 -20.70763 -19.98168 -19.85169 -18.57265 -17.89622 -16.90641 -16.37367 -16.30377 -15.88393 -15.80890 -15.22548 -14.86134 -14.73810 -14.45006 -14.09032 -13.98354 -13.90547 -13.62324 -13.33666 -13.23537 -12.92792 -12.72869 -12.59810 -12.32112 -12.11214 -12.00342 -11.75766 -11.60503 -11.27799 -11.23125 -10.97613 -10.86531 -10.73284 -10.51625 -10.31343 -10.09572 -9.87820 -9.68301 -9.35439 -9.19205 -8.98934 -8.69069 -8.37414 -6.92504 -5.83202 -3.13497 1.14266 1.25715 2.51907 2.60262 3.34781 3.41168 3.42703 3.52692 3.60711 4.39962 4.43626 4.51461 4.59367 4.68193 4.68950 4.76310 4.93238 4.94182 5.15409 5.18698 5.28472 5.32850 5.39601 5.41291 5.42247 5.48016 5.58681 5.78707 5.81719 5.85710 5.94126 6.11158 6.12345 6.21301 6.24109 6.33833 6.38092 6.45280 6.56521 6.59759 6.85157 7.19685 7.23272 7.35741 7.48370 7.66039 8.00316 8.13637 8.20545 9.11637 9.72712 10.38477 11.29946 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.003018 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.951585 B = 9276.811220 C =10997.575895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.065 3.935 3 H 0.103 0.897 4 O -0.285 6.285 5 C 0.132 3.868 6 C -0.211 4.211 7 C -0.079 4.079 8 C -0.162 4.162 9 C -0.082 4.082 10 C -0.151 4.151 11 C 0.521 3.479 12 O -0.522 6.522 13 N -0.715 5.715 14 C 0.111 3.889 15 C 0.085 3.915 16 O -0.550 6.550 17 C -0.114 4.114 18 C 0.136 3.864 19 N -0.604 5.604 20 C -0.226 4.226 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.925 5.925 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.162 3.838 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.402 0.598 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.367 0.633 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.025 0.975 45 H 0.252 0.748 46 H 0.044 0.956 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 -5.963 14.330 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.005 3.995 3 H 0.120 0.880 4 O -0.197 6.197 5 C 0.087 3.913 6 C -0.230 4.230 7 C -0.097 4.097 8 C -0.180 4.180 9 C -0.100 4.100 10 C -0.170 4.170 11 C 0.305 3.695 12 O -0.397 6.397 13 N -0.369 5.369 14 C -0.013 4.013 15 C 0.044 3.956 16 O -0.355 6.355 17 C -0.153 4.153 18 C 0.010 3.990 19 N -0.330 5.330 20 C -0.354 4.354 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.573 5.573 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.037 3.963 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.237 0.763 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.213 0.787 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.282 -7.070 13.882 16.797 hybrid contribution 0.148 1.872 0.238 1.893 sum -6.135 -5.198 14.120 16.249 Atomic orbital electron populations 1.22332 0.92497 1.04386 1.04032 1.22224 0.95793 0.97380 0.84074 0.87990 1.86203 1.80890 1.36965 1.15672 1.19107 0.95135 0.90378 0.86688 1.21368 1.07087 0.94257 1.00276 1.20972 0.97070 0.99446 0.92232 1.21069 1.02329 0.95869 0.98771 1.20970 0.97899 0.94036 0.97082 1.20476 1.03729 1.01507 0.91261 1.19937 0.80130 0.85469 0.83992 1.90728 1.39437 1.23197 1.86359 1.45765 1.57973 1.27803 1.05316 1.22002 1.00416 0.95921 0.82915 1.22939 0.81058 0.98286 0.93341 1.86523 1.19088 1.80463 1.49397 1.22702 0.99875 0.98261 0.94446 1.21569 0.97617 0.86659 0.93166 1.44383 1.69427 1.15911 1.03314 1.19093 1.29485 0.94065 0.92721 0.90255 1.24783 1.00982 0.99088 0.95549 1.69904 1.49694 1.36451 1.01219 0.86102 0.79978 0.82307 0.77426 1.21684 1.21629 1.20593 1.21806 0.97985 0.88365 0.88180 0.90648 0.90595 0.89978 0.85062 0.85704 0.85992 0.85420 0.85102 0.76262 0.91027 0.90312 0.78652 0.90135 0.90863 0.93918 0.95753 0.93805 0.93806 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.13 37.16 0.34 -1.26 16 2 C 0.07 0.80 2.64 -27.88 -0.07 0.73 16 3 H 0.10 1.14 6.29 -51.93 -0.33 0.81 16 4 O -0.28 -4.06 9.34 -39.29 -0.37 -4.43 16 5 C 0.13 1.66 6.60 -39.22 -0.26 1.40 16 6 C -0.21 -2.28 8.25 -39.43 -0.33 -2.61 16 7 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 8 C -0.16 -1.46 10.04 -39.56 -0.40 -1.85 16 9 C -0.08 -0.76 10.04 -39.60 -0.40 -1.16 16 10 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 11 C 0.52 7.94 7.18 -10.98 -0.08 7.86 16 12 O -0.52 -10.06 16.51 -14.30 -0.24 -10.30 16 13 N -0.72 -10.03 5.14 -60.29 -0.31 -10.34 16 14 C 0.11 1.74 4.73 -4.04 -0.02 1.73 16 15 C 0.09 1.47 0.92 -88.79 -0.08 1.39 16 16 O -0.55 -8.93 13.10 -35.23 -0.46 -9.39 16 17 C -0.11 -1.95 6.26 -24.58 -0.15 -2.10 16 18 C 0.14 2.77 7.23 -2.53 -0.02 2.75 16 19 N -0.60 -14.89 3.39 -170.07 -0.58 -15.46 16 20 C -0.23 -6.12 10.27 -15.06 -0.15 -6.27 16 21 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 22 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 23 N -0.92 -25.64 10.36 55.49 0.57 -25.06 16 24 Si 0.91 21.57 29.56 -169.99 -5.02 16.55 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.16 3.58 4.17 -3.06 -0.01 3.56 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.61 6.94 -51.93 -0.36 0.25 16 31 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 32 H 0.13 1.23 5.44 -52.49 -0.29 0.95 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.40 4.92 7.17 -40.82 -0.29 4.62 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 40 H 0.37 4.68 8.12 45.56 0.37 5.05 16 41 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 46 H 0.04 1.05 7.52 -51.93 -0.39 0.66 16 47 H 0.06 1.44 6.98 -51.93 -0.36 1.07 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -33.73 383.29 -9.40 -43.13 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.25 Total: 8.95 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.52 Total: 0.59 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.31 Total: -50.86 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.06 Total: -24.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.73 -9.40 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271221387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.248 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds