Wall clock time and date at job start Tue Mar 31 2020 18:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46759 * 2 1 4 4 O 1.42897 * 109.47342 * 120.00784 * 2 1 3 5 5 C 1.35902 * 116.99645 * 275.13806 * 4 2 1 6 6 C 1.38734 * 120.05667 * 4.93441 * 5 4 2 7 7 C 1.38141 * 119.94270 * 179.70077 * 6 5 4 8 8 C 1.38268 * 120.05835 * 0.60092 * 7 6 5 9 9 C 1.38268 * 120.10703 * 359.67793 * 8 7 6 10 10 C 1.38145 * 120.05828 * 0.02562 * 9 8 7 11 11 C 1.50707 * 109.46826 * 240.00729 * 2 1 3 12 12 O 1.21280 * 119.99738 * 244.99873 * 11 2 1 13 13 N 1.34777 * 120.00166 * 64.99533 * 11 2 1 14 14 C 1.46503 * 119.99744 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.46935 * 180.02562 * 14 13 11 16 16 O 1.42904 * 110.63934 * 298.31179 * 15 14 13 17 17 C 1.55157 * 110.72205 * 174.97476 * 15 14 13 18 18 C 1.54909 * 101.58031 * 206.13642 * 17 15 14 19 19 N 1.47425 * 104.83571 * 37.00732 * 18 17 15 20 20 C 1.36938 * 125.64583 * 155.91951 * 19 18 17 21 21 H 1.07997 * 120.00125 * 5.12783 * 20 19 18 22 22 C 1.38813 * 119.99487 * 185.13570 * 20 19 18 23 23 N 1.31614 * 120.00112 * 352.92165 * 22 20 19 24 24 Si 1.86804 * 119.99707 * 172.92892 * 22 20 19 25 25 H 1.48495 * 109.46996 * 94.98353 * 24 22 20 26 26 H 1.48501 * 109.46671 * 214.98130 * 24 22 20 27 27 H 1.48497 * 109.47197 * 334.97935 * 24 22 20 28 28 C 1.47019 * 108.70123 * 335.87240 * 19 18 17 29 29 H 1.09001 * 109.46759 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46509 * 299.99182 * 1 2 3 31 31 H 1.08994 * 109.47529 * 59.99540 * 1 2 3 32 32 H 1.07999 * 120.02505 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.97530 * 180.27518 * 7 6 5 34 34 H 1.07992 * 119.94595 * 179.70062 * 8 7 6 35 35 H 1.08006 * 119.97349 * 180.02562 * 9 8 7 36 36 H 1.07998 * 120.02773 * 180.02562 * 10 9 8 37 37 H 0.97002 * 119.99795 * 0.02562 * 13 11 2 38 38 H 1.08997 * 109.46918 * 59.99905 * 14 13 11 39 39 H 1.08998 * 109.46738 * 300.00117 * 14 13 11 40 40 H 0.96701 * 114.00086 * 61.68831 * 16 15 14 41 41 H 1.09002 * 110.99804 * 324.20596 * 17 15 14 42 42 H 1.08994 * 111.00297 * 88.05891 * 17 15 14 43 43 H 1.09001 * 110.36797 * 155.84968 * 18 17 15 44 44 H 1.09000 * 110.36371 * 278.16543 * 18 17 15 45 45 H 0.97007 * 120.00121 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.87911 * 241.64336 * 28 19 18 47 47 H 1.08996 * 109.88406 * 120.48044 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.1098 0.0617 2.3048 6 6 1.6645 1.3754 2.3260 7 6 1.7651 2.1189 3.4860 8 6 2.3204 1.5588 4.6216 9 6 2.7702 0.2515 4.6013 10 6 2.6663 -0.4982 3.4456 11 6 2.0323 -0.7103 -1.2306 12 8 2.6529 -1.7466 -1.1218 13 7 1.7918 -0.1940 -2.4521 14 6 2.2796 -0.8848 -3.6484 15 6 1.8754 -0.0942 -4.8943 16 8 0.4526 -0.0088 -4.9971 17 6 2.4846 -0.7320 -6.1708 18 6 2.5626 0.4886 -7.1214 19 7 2.9258 1.6220 -6.2514 20 6 3.5490 2.7719 -6.6572 21 1 3.7421 2.9401 -7.7064 22 6 3.9328 3.7211 -5.7199 23 7 3.5761 3.5841 -4.4604 24 14 4.9555 5.1931 -6.2462 25 1 4.0597 6.3446 -6.5230 26 1 5.9018 5.5522 -5.1595 27 1 5.7180 4.8525 -7.4741 28 6 2.5070 1.3138 -4.8763 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.2355 1.8151 1.4377 33 1 1.4145 3.1402 3.5044 34 1 2.4025 2.1432 5.5260 35 1 3.2033 -0.1840 5.4898 36 1 3.0175 -1.5194 3.4304 37 1 1.2957 0.6350 -2.5391 38 1 1.8446 -1.8832 -3.6941 39 1 3.3659 -0.9634 -3.6049 40 1 0.0317 0.4508 -4.2577 41 1 3.4773 -1.1352 -5.9704 42 1 1.8266 -1.5010 -6.5755 43 1 3.3301 0.3309 -7.8792 44 1 1.5952 0.6659 -7.5914 45 1 3.8446 4.2472 -3.8053 46 1 1.7723 2.0453 -4.5398 47 1 3.3727 1.3233 -4.2141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271221387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:53 Heat of formation + Delta-G solvation = -87.609547 kcal Electronic energy + Delta-G solvation = -29083.434168 eV Core-core repulsion = 25038.607310 eV Total energy + Delta-G solvation = -4044.826858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75477 -40.76343 -39.81434 -38.26094 -36.74793 -35.45017 -34.14260 -33.31851 -31.79373 -31.14872 -30.57660 -29.53191 -27.66715 -26.05128 -25.00196 -23.72486 -23.08176 -22.21126 -21.41261 -21.19287 -19.44683 -19.20165 -18.67104 -17.74694 -17.35269 -16.91159 -16.72199 -16.59046 -16.11654 -16.02409 -15.79546 -15.51749 -15.37699 -15.01069 -14.76995 -14.44453 -14.38739 -14.11091 -13.98528 -13.81446 -13.49203 -13.33182 -13.27187 -13.02489 -12.86124 -12.70641 -12.45854 -12.42247 -12.13706 -12.10804 -11.94287 -11.82950 -11.78759 -11.66929 -10.94857 -10.84764 -10.71171 -10.26261 -9.95210 -9.20083 -8.89283 -7.88096 -5.19884 0.38641 0.46668 1.38730 1.46251 1.47654 1.50619 1.56297 2.48595 2.50897 2.84124 3.17039 3.31805 3.37997 3.48796 3.68217 3.83320 3.86676 3.90567 3.92646 3.96374 3.99917 4.28438 4.39627 4.44807 4.50800 4.53231 4.60971 4.64517 4.70583 4.75706 4.80361 4.95345 5.01278 5.06605 5.09343 5.20439 5.31880 5.35103 5.43527 5.47921 5.48068 5.60007 5.66524 5.82618 6.17660 6.25225 6.41909 6.76871 7.01682 7.09890 7.75792 8.40579 9.22759 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.003018 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.951585 B = 9276.811220 C =10997.575895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.068 3.932 3 H 0.112 0.888 4 O -0.313 6.313 5 C 0.105 3.895 6 C -0.220 4.220 7 C -0.085 4.085 8 C -0.161 4.161 9 C -0.082 4.082 10 C -0.172 4.172 11 C 0.519 3.481 12 O -0.568 6.568 13 N -0.705 5.705 14 C 0.120 3.880 15 C 0.106 3.894 16 O -0.551 6.551 17 C -0.107 4.107 18 C 0.129 3.871 19 N -0.627 5.627 20 C -0.243 4.243 21 H 0.079 0.921 22 C -0.059 4.059 23 N -0.943 5.943 24 Si 0.972 3.028 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.272 1.272 28 C 0.173 3.827 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.127 0.873 37 H 0.412 0.588 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.383 0.617 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.048 0.952 44 H 0.023 0.977 45 H 0.247 0.753 46 H 0.021 0.979 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.872 -5.418 14.988 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.008 3.992 3 H 0.130 0.870 4 O -0.226 6.226 5 C 0.060 3.940 6 C -0.238 4.238 7 C -0.103 4.103 8 C -0.179 4.179 9 C -0.100 4.100 10 C -0.190 4.190 11 C 0.305 3.695 12 O -0.446 6.446 13 N -0.359 5.359 14 C -0.004 4.004 15 C 0.064 3.936 16 O -0.358 6.358 17 C -0.146 4.146 18 C 0.004 3.996 19 N -0.354 5.354 20 C -0.372 4.372 21 H 0.097 0.903 22 C -0.253 4.253 23 N -0.592 5.592 24 Si 0.801 3.199 25 H -0.214 1.214 26 H -0.221 1.221 27 H -0.197 1.197 28 C 0.048 3.952 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.249 0.751 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.057 0.943 46 H 0.039 0.961 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.190 -6.513 14.524 17.467 hybrid contribution 0.408 1.736 0.047 1.784 sum -6.782 -4.778 14.572 16.768 Atomic orbital electron populations 1.22331 0.89919 1.04481 1.05747 1.22290 0.97610 0.96879 0.82372 0.87026 1.86149 1.81709 1.38228 1.16531 1.19388 0.96808 0.91325 0.86475 1.21556 1.07160 0.93723 1.01361 1.21339 0.96638 1.00430 0.91880 1.21469 1.01020 0.95829 0.99619 1.21307 0.97307 0.94232 0.97146 1.20707 1.04431 1.01908 0.91992 1.20522 0.79155 0.84935 0.84932 1.90699 1.41557 1.25327 1.87030 1.45677 1.57514 1.27905 1.04796 1.21810 0.99509 0.96309 0.82763 1.22565 0.81428 0.95332 0.94274 1.86496 1.18083 1.80629 1.50610 1.22704 1.01102 0.97444 0.93300 1.21730 0.97462 0.86745 0.93616 1.44715 1.69361 1.16387 1.04940 1.19415 1.29670 0.95197 0.92941 0.90273 1.25529 1.02235 1.01682 0.95819 1.70083 1.50345 1.36978 1.01802 0.85154 0.78377 0.79324 0.77034 1.21393 1.22112 1.19738 1.21577 0.96279 0.90763 0.86583 0.91336 0.89234 0.87844 0.84085 0.83414 0.83270 0.82891 0.85472 0.75104 0.89772 0.92024 0.76789 0.89337 0.88050 0.93352 0.95897 0.94335 0.96124 0.95680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.13 71.98 0.66 -2.21 16 2 C 0.07 1.67 2.64 29.85 0.08 1.75 16 3 H 0.11 2.46 6.29 -2.39 -0.02 2.45 16 4 O -0.31 -9.17 9.34 -73.46 -0.69 -9.86 16 5 C 0.10 2.65 6.60 22.51 0.15 2.80 16 6 C -0.22 -4.55 8.25 22.37 0.18 -4.36 16 7 C -0.08 -1.45 10.04 22.25 0.22 -1.23 16 8 C -0.16 -2.52 10.04 22.28 0.22 -2.30 16 9 C -0.08 -1.41 10.04 22.25 0.22 -1.19 16 10 C -0.17 -3.91 9.99 22.37 0.22 -3.69 16 11 C 0.52 15.98 7.18 87.66 0.63 16.61 16 12 O -0.57 -22.49 16.51 15.96 0.26 -22.22 16 13 N -0.71 -19.58 5.14 -463.06 -2.38 -21.96 16 14 C 0.12 3.71 4.73 86.38 0.41 4.11 16 15 C 0.11 3.54 0.92 -9.61 -0.01 3.53 16 16 O -0.55 -16.81 13.10 -148.98 -1.95 -18.76 16 17 C -0.11 -3.47 6.26 31.99 0.20 -3.27 16 18 C 0.13 5.17 7.23 86.85 0.63 5.80 16 19 N -0.63 -31.08 3.39 -691.99 -2.35 -33.43 16 20 C -0.24 -13.30 10.27 84.03 0.86 -12.43 16 21 H 0.08 4.19 7.84 -2.91 -0.02 4.17 16 22 C -0.06 -3.24 5.48 84.86 0.46 -2.78 16 23 N -0.94 -53.14 10.36 21.65 0.22 -52.92 16 24 Si 0.97 44.55 29.56 68.60 2.03 46.58 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 C 0.17 7.73 4.17 86.73 0.36 8.09 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.31 6.94 -2.38 -0.02 1.29 16 31 H 0.10 1.29 7.92 -2.39 -0.02 1.27 16 32 H 0.14 2.49 5.44 -2.91 -0.02 2.47 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 34 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.41 9.80 7.17 -92.71 -0.66 9.14 16 38 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 40 H 0.38 9.00 8.12 -74.06 -0.60 8.40 16 41 H 0.09 2.74 8.04 -2.39 -0.02 2.72 16 42 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.25 13.60 8.31 -92.70 -0.77 12.83 16 46 H 0.02 1.00 7.52 -2.39 -0.02 0.99 16 47 H 0.03 1.28 6.98 -2.39 -0.02 1.26 16 Total: -1.00 -74.17 383.29 0.39 -73.78 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -0.27 Total: 29.57 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.51 Total: 9.22 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.50 Total: -108.31 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -2.37 Total: -50.84 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -74.17 0.39 -73.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271221387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.834 kcal (2) G-P(sol) polarization free energy of solvation -74.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds