Wall clock time and date at job start Tue Mar 31 2020 18:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47342 * 2 1 4 4 O 1.42895 * 109.46789 * 239.99298 * 2 1 3 5 5 C 1.35903 * 116.99967 * 84.92076 * 4 2 1 6 6 C 1.38732 * 120.05642 * 174.25134 * 5 4 2 7 7 C 1.38142 * 119.94187 * 179.69877 * 6 5 4 8 8 C 1.38272 * 120.05708 * 0.60023 * 7 6 5 9 9 C 1.38266 * 120.10525 * 359.67335 * 8 7 6 10 10 C 1.38142 * 120.06064 * 0.02726 * 9 8 7 11 11 C 1.50706 * 109.47037 * 119.99554 * 2 1 3 12 12 O 1.21284 * 119.99675 * 114.99468 * 11 2 1 13 13 N 1.34772 * 120.00084 * 295.27433 * 11 2 1 14 14 C 1.46500 * 120.00084 * 179.72194 * 13 11 2 15 15 C 1.52996 * 109.47091 * 179.97438 * 14 13 11 16 16 O 1.42897 * 110.89062 * 297.57415 * 15 14 13 17 17 C 1.55160 * 111.00426 * 173.65049 * 15 14 13 18 18 C 1.54316 * 102.94683 * 206.42717 * 17 15 14 19 19 N 1.47022 * 107.27087 * 22.19433 * 18 17 15 20 20 C 1.36934 * 125.64980 * 181.09738 * 19 18 17 21 21 H 1.08007 * 120.00072 * 179.97438 * 20 19 18 22 22 C 1.38804 * 120.00112 * 359.95538 * 20 19 18 23 23 N 1.31614 * 120.00208 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46753 * 90.00407 * 24 22 20 26 26 H 1.48502 * 109.47049 * 210.00068 * 24 22 20 27 27 H 1.48504 * 109.47153 * 330.00409 * 24 22 20 28 28 C 1.47429 * 108.69974 * 1.05749 * 19 18 17 29 29 H 1.09004 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46875 * 300.00276 * 1 2 3 31 31 H 1.08995 * 109.46795 * 60.00374 * 1 2 3 32 32 H 1.08004 * 120.02752 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.97614 * 180.27708 * 7 6 5 34 34 H 1.08001 * 119.94554 * 179.70479 * 8 7 6 35 35 H 1.08010 * 119.96854 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.02604 * 180.02562 * 10 9 8 37 37 H 0.96997 * 119.99941 * 359.72372 * 13 11 2 38 38 H 1.09001 * 109.47303 * 300.00417 * 14 13 11 39 39 H 1.09002 * 109.46913 * 60.00296 * 14 13 11 40 40 H 0.96705 * 113.99650 * 59.29980 * 16 15 14 41 41 H 1.09005 * 110.72247 * 324.79271 * 17 15 14 42 42 H 1.09003 * 110.71606 * 88.06242 * 17 15 14 43 43 H 1.09001 * 109.88653 * 262.78080 * 18 17 15 44 44 H 1.09000 * 109.88789 * 141.61159 * 18 17 15 45 45 H 0.96996 * 120.00801 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.36851 * 217.02783 * 28 19 18 47 47 H 1.09008 * 110.36479 * 94.71379 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.1108 0.0619 -2.3046 6 6 2.6773 -0.4945 -3.4422 7 6 2.7767 0.2534 -4.5993 8 6 2.3236 1.5596 -4.6208 9 6 1.7638 2.1182 -3.4866 10 6 1.6564 1.3725 -2.3287 11 6 2.0324 -0.7103 1.2306 12 8 2.6529 -1.7467 1.1216 13 7 1.7872 -0.1969 2.4523 14 6 2.2702 -0.8907 3.6488 15 6 1.8613 -0.1029 4.8950 16 8 2.4625 1.1934 4.8985 17 6 2.2152 -0.8844 6.1879 18 6 1.1887 -0.3483 7.2079 19 7 0.0567 0.1954 6.4433 20 6 -1.0569 0.7865 6.9777 21 1 -1.8366 1.1560 6.3281 22 6 -1.1839 0.9104 8.3544 23 7 -0.2338 0.4602 9.1461 24 14 -2.7028 1.7174 9.0834 25 1 -3.7415 0.6852 9.3301 26 1 -2.3459 2.3768 10.3653 27 1 -3.2282 2.7316 8.1344 28 6 0.3196 -0.0004 5.0059 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.0362 -1.5130 -3.4244 33 1 3.2135 -0.1807 -5.4865 34 1 2.4065 2.1442 -5.5251 35 1 1.4101 3.1386 -3.5060 36 1 1.2187 1.8092 -1.4432 37 1 1.2908 0.6319 2.5394 38 1 1.8350 -1.8891 3.6905 39 1 3.3567 -0.9693 3.6095 40 1 2.2296 1.7370 4.1333 41 1 2.0862 -1.9564 6.0381 42 1 3.2320 -0.6584 6.5089 43 1 1.6414 0.4393 7.8104 44 1 0.8465 -1.1592 7.8507 45 1 -0.3223 0.5471 10.1081 46 1 -0.0460 0.8523 4.4338 47 1 -0.1480 -0.9211 4.6567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271221388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:57 Heat of formation + Delta-G solvation = -62.198646 kcal Electronic energy + Delta-G solvation = -28647.754447 eV Core-core repulsion = 24604.029488 eV Total energy + Delta-G solvation = -4043.724959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.92531 -39.75206 -38.55422 -37.49442 -35.17791 -34.32033 -32.64708 -32.05800 -31.13758 -29.99927 -29.59073 -28.22688 -25.93674 -24.93614 -23.67070 -23.02041 -22.30079 -20.77504 -20.15168 -19.86750 -18.74256 -18.01337 -16.96966 -16.52665 -16.27589 -16.01534 -15.95681 -15.32211 -15.11291 -14.76763 -14.68330 -14.35527 -14.10190 -13.86218 -13.73895 -13.50982 -13.37843 -13.02084 -12.84924 -12.72281 -12.30912 -12.16769 -11.96561 -11.90450 -11.75916 -11.41232 -11.14050 -11.03180 -10.92745 -10.77653 -10.39234 -10.24112 -10.15380 -9.87750 -9.77088 -9.48520 -9.34667 -9.22691 -8.62729 -8.53363 -6.87547 -5.74995 -3.09009 0.98708 1.10291 2.32186 2.38572 3.32500 3.37105 3.41531 3.44141 3.45259 4.22288 4.37712 4.42858 4.44598 4.51175 4.53091 4.57296 4.78950 4.80973 5.01606 5.04082 5.07818 5.19626 5.25723 5.31749 5.33622 5.47478 5.60543 5.65872 5.70474 5.77041 5.89658 5.96478 6.05801 6.12652 6.18155 6.19219 6.29882 6.38902 6.40699 6.49279 6.55369 7.02626 7.25066 7.49410 7.60395 7.79863 7.91604 7.99009 8.21480 9.16880 9.77093 10.42003 11.36639 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.002223 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.803818 B =12590.553762 C =13386.306006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 H 0.099 0.901 4 O -0.285 6.285 5 C 0.132 3.868 6 C -0.150 4.150 7 C -0.081 4.081 8 C -0.161 4.161 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.519 3.481 12 O -0.517 6.517 13 N -0.721 5.721 14 C 0.105 3.895 15 C 0.102 3.898 16 O -0.536 6.536 17 C -0.128 4.128 18 C 0.181 3.819 19 N -0.598 5.598 20 C -0.231 4.231 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.117 3.883 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.399 0.601 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.363 0.637 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.253 0.747 46 H 0.037 0.963 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 2.000 -24.605 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.007 3.993 3 H 0.117 0.883 4 O -0.197 6.197 5 C 0.086 3.914 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.231 4.231 11 C 0.303 3.697 12 O -0.391 6.391 13 N -0.375 5.375 14 C -0.018 4.018 15 C 0.059 3.941 16 O -0.339 6.339 17 C -0.167 4.167 18 C 0.057 3.943 19 N -0.324 5.324 20 C -0.359 4.359 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.207 1.207 28 C -0.010 4.010 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.234 0.766 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.208 0.792 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.577 0.850 -23.827 24.486 hybrid contribution -1.399 1.256 0.023 1.880 sum 4.178 2.106 -23.804 24.259 Atomic orbital electron populations 1.22358 0.92251 1.04783 1.04110 1.22211 0.95979 0.96979 0.84124 0.88331 1.86219 1.80902 1.36913 1.15669 1.19103 0.95194 0.90375 0.86720 1.20499 1.03530 1.01588 0.91257 1.20991 0.97795 0.94016 0.97067 1.21088 1.02194 0.95881 0.98775 1.20970 0.97076 0.99460 0.92269 1.21340 1.07115 0.94341 1.00343 1.19997 0.80154 0.85613 0.83978 1.90751 1.39198 1.22827 1.86319 1.45853 1.58099 1.28076 1.05464 1.22102 1.00207 0.96796 0.82738 1.22731 0.94250 0.83518 0.93580 1.86660 1.72667 1.26143 1.48459 1.22917 1.01572 0.98074 0.94100 1.21146 0.85192 0.97366 0.90632 1.44341 1.19939 1.69541 0.98603 1.19004 0.95199 1.31461 0.90281 0.90532 1.24811 0.98355 1.01158 0.95997 1.69952 1.32693 1.50985 1.02993 0.86111 0.82081 0.78854 0.78615 1.21583 1.21626 1.20732 1.22132 0.91659 0.98200 0.88990 0.90421 0.89869 0.90511 0.85027 0.85335 0.85924 0.85708 0.85169 0.76581 0.90124 0.90542 0.79172 0.90840 0.90868 0.93089 0.93727 0.93658 0.94458 0.95556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.12 37.16 0.34 -1.07 16 2 C 0.07 0.66 2.64 -27.88 -0.07 0.59 16 3 H 0.10 0.73 6.32 -51.93 -0.33 0.40 16 4 O -0.28 -3.48 9.34 -39.29 -0.37 -3.85 16 5 C 0.13 1.38 6.60 -39.22 -0.26 1.12 16 6 C -0.15 -1.44 9.99 -39.43 -0.39 -1.83 16 7 C -0.08 -0.62 10.04 -39.60 -0.40 -1.01 16 8 C -0.16 -1.16 10.04 -39.56 -0.40 -1.55 16 9 C -0.08 -0.59 10.04 -39.61 -0.40 -0.99 16 10 C -0.21 -1.81 8.24 -39.44 -0.32 -2.13 16 11 C 0.52 6.61 7.18 -10.98 -0.08 6.53 16 12 O -0.52 -8.87 16.51 -14.31 -0.24 -9.11 16 13 N -0.72 -8.08 5.12 -60.29 -0.31 -8.39 16 14 C 0.11 1.43 4.90 -4.04 -0.02 1.41 16 15 C 0.10 1.64 0.95 -88.47 -0.08 1.56 16 16 O -0.54 -8.77 13.19 -35.23 -0.46 -9.23 16 17 C -0.13 -2.34 6.16 -24.90 -0.15 -2.49 16 18 C 0.18 4.36 5.37 -3.07 -0.02 4.34 16 19 N -0.60 -14.81 3.39 -170.07 -0.58 -15.38 16 20 C -0.23 -6.31 10.28 -15.06 -0.15 -6.46 16 21 H 0.08 2.00 7.83 -52.48 -0.41 1.58 16 22 C -0.01 -0.19 5.49 -17.44 -0.10 -0.28 16 23 N -0.92 -26.82 10.31 55.49 0.57 -26.25 16 24 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 C 0.12 2.21 5.92 -2.53 -0.01 2.20 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.53 7.91 -51.93 -0.41 0.12 16 31 H 0.08 0.52 6.90 -51.93 -0.36 0.17 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.13 0.87 5.43 -52.48 -0.28 0.59 16 37 H 0.40 3.49 7.07 -40.82 -0.29 3.20 16 38 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.36 4.33 8.16 45.56 0.37 4.70 16 41 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16 44 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.04 0.65 7.97 -51.93 -0.41 0.23 16 47 H 0.03 0.50 8.04 -51.92 -0.42 0.08 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -35.08 383.29 -9.40 -44.48 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.25 Total: 5.25 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.52 Total: -0.07 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.31 Total: -50.03 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.07 Total: -22.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.08 -9.40 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271221388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.719 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds