Wall clock time and date at job start Tue Mar 31 2020 18:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47342 * 2 1 4 4 O 1.42895 * 109.46789 * 239.99298 * 2 1 3 5 5 C 1.35903 * 116.99967 * 84.92076 * 4 2 1 6 6 C 1.38732 * 120.05642 * 174.25134 * 5 4 2 7 7 C 1.38142 * 119.94187 * 179.69877 * 6 5 4 8 8 C 1.38272 * 120.05708 * 0.60023 * 7 6 5 9 9 C 1.38266 * 120.10525 * 359.67335 * 8 7 6 10 10 C 1.38142 * 120.06064 * 0.02726 * 9 8 7 11 11 C 1.50706 * 109.47037 * 119.99554 * 2 1 3 12 12 O 1.21284 * 119.99675 * 114.99468 * 11 2 1 13 13 N 1.34772 * 120.00084 * 295.27433 * 11 2 1 14 14 C 1.46500 * 120.00084 * 179.72194 * 13 11 2 15 15 C 1.52996 * 109.47091 * 179.97438 * 14 13 11 16 16 O 1.42897 * 110.89062 * 297.57415 * 15 14 13 17 17 C 1.55160 * 111.00426 * 173.65049 * 15 14 13 18 18 C 1.54316 * 102.94683 * 206.42717 * 17 15 14 19 19 N 1.47022 * 107.27087 * 22.19433 * 18 17 15 20 20 C 1.36934 * 125.64980 * 181.09738 * 19 18 17 21 21 H 1.08007 * 120.00072 * 179.97438 * 20 19 18 22 22 C 1.38804 * 120.00112 * 359.95538 * 20 19 18 23 23 N 1.31614 * 120.00208 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46753 * 90.00407 * 24 22 20 26 26 H 1.48502 * 109.47049 * 210.00068 * 24 22 20 27 27 H 1.48504 * 109.47153 * 330.00409 * 24 22 20 28 28 C 1.47429 * 108.69974 * 1.05749 * 19 18 17 29 29 H 1.09004 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46875 * 300.00276 * 1 2 3 31 31 H 1.08995 * 109.46795 * 60.00374 * 1 2 3 32 32 H 1.08004 * 120.02752 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.97614 * 180.27708 * 7 6 5 34 34 H 1.08001 * 119.94554 * 179.70479 * 8 7 6 35 35 H 1.08010 * 119.96854 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.02604 * 180.02562 * 10 9 8 37 37 H 0.96997 * 119.99941 * 359.72372 * 13 11 2 38 38 H 1.09001 * 109.47303 * 300.00417 * 14 13 11 39 39 H 1.09002 * 109.46913 * 60.00296 * 14 13 11 40 40 H 0.96705 * 113.99650 * 59.29980 * 16 15 14 41 41 H 1.09005 * 110.72247 * 324.79271 * 17 15 14 42 42 H 1.09003 * 110.71606 * 88.06242 * 17 15 14 43 43 H 1.09001 * 109.88653 * 262.78080 * 18 17 15 44 44 H 1.09000 * 109.88789 * 141.61159 * 18 17 15 45 45 H 0.96996 * 120.00801 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.36851 * 217.02783 * 28 19 18 47 47 H 1.09008 * 110.36479 * 94.71379 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.1108 0.0619 -2.3046 6 6 2.6773 -0.4945 -3.4422 7 6 2.7767 0.2534 -4.5993 8 6 2.3236 1.5596 -4.6208 9 6 1.7638 2.1182 -3.4866 10 6 1.6564 1.3725 -2.3287 11 6 2.0324 -0.7103 1.2306 12 8 2.6529 -1.7467 1.1216 13 7 1.7872 -0.1969 2.4523 14 6 2.2702 -0.8907 3.6488 15 6 1.8613 -0.1029 4.8950 16 8 2.4625 1.1934 4.8985 17 6 2.2152 -0.8844 6.1879 18 6 1.1887 -0.3483 7.2079 19 7 0.0567 0.1954 6.4433 20 6 -1.0569 0.7865 6.9777 21 1 -1.8366 1.1560 6.3281 22 6 -1.1839 0.9104 8.3544 23 7 -0.2338 0.4602 9.1461 24 14 -2.7028 1.7174 9.0834 25 1 -3.7415 0.6852 9.3301 26 1 -2.3459 2.3768 10.3653 27 1 -3.2282 2.7316 8.1344 28 6 0.3196 -0.0004 5.0059 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.0362 -1.5130 -3.4244 33 1 3.2135 -0.1807 -5.4865 34 1 2.4065 2.1442 -5.5251 35 1 1.4101 3.1386 -3.5060 36 1 1.2187 1.8092 -1.4432 37 1 1.2908 0.6319 2.5394 38 1 1.8350 -1.8891 3.6905 39 1 3.3567 -0.9693 3.6095 40 1 2.2296 1.7370 4.1333 41 1 2.0862 -1.9564 6.0381 42 1 3.2320 -0.6584 6.5089 43 1 1.6414 0.4393 7.8104 44 1 0.8465 -1.1592 7.8507 45 1 -0.3223 0.5471 10.1081 46 1 -0.0460 0.8523 4.4338 47 1 -0.1480 -0.9211 4.6567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271221388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:56 Heat of formation + Delta-G solvation = -87.256791 kcal Electronic energy + Delta-G solvation = -28648.841050 eV Core-core repulsion = 24604.029488 eV Total energy + Delta-G solvation = -4044.811561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74809 -40.75983 -39.81413 -38.24643 -36.77633 -35.46891 -34.05206 -33.26185 -31.76933 -31.32056 -30.58793 -29.66310 -27.50531 -26.04162 -24.97437 -23.70246 -23.07359 -22.21043 -21.47450 -21.21682 -19.42220 -19.07264 -18.77633 -17.50770 -17.33648 -16.87599 -16.70947 -16.69106 -16.26835 -16.11417 -15.70356 -15.65528 -15.32516 -15.04045 -14.82815 -14.42706 -14.32124 -14.10230 -13.91793 -13.78857 -13.48336 -13.30941 -13.23877 -12.91288 -12.85639 -12.77455 -12.43548 -12.35162 -12.09140 -12.07116 -12.02682 -11.79621 -11.78131 -11.67160 -10.99864 -10.85571 -10.67921 -10.28097 -9.92984 -9.18113 -8.88015 -7.83773 -5.19231 0.40847 0.48805 1.40241 1.46758 1.48780 1.49389 1.57152 2.49623 2.51290 2.86185 3.17684 3.34238 3.40232 3.49014 3.64731 3.70367 3.84053 3.93323 3.94992 3.97481 4.01962 4.30614 4.41259 4.46529 4.52989 4.58052 4.62557 4.64313 4.67773 4.77503 4.81617 4.93864 4.95392 5.07068 5.09693 5.12285 5.20792 5.36774 5.45453 5.49966 5.62723 5.64270 5.77078 5.84559 6.19743 6.26858 6.44866 6.83259 7.03987 7.10013 7.77833 8.41730 9.26948 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.002223 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.803818 B =12590.553762 C =13386.306006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.070 3.930 3 H 0.127 0.873 4 O -0.315 6.315 5 C 0.106 3.894 6 C -0.174 4.174 7 C -0.084 4.084 8 C -0.163 4.163 9 C -0.084 4.084 10 C -0.216 4.216 11 C 0.519 3.481 12 O -0.567 6.567 13 N -0.706 5.706 14 C 0.119 3.881 15 C 0.123 3.877 16 O -0.552 6.552 17 C -0.122 4.122 18 C 0.189 3.811 19 N -0.621 5.621 20 C -0.238 4.238 21 H 0.088 0.912 22 C -0.071 4.071 23 N -0.953 5.953 24 Si 0.979 3.021 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.265 1.265 28 C 0.112 3.888 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.415 0.585 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.384 0.616 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.245 0.755 46 H 0.060 0.940 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 3.916 -27.281 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 H 0.145 0.855 4 O -0.228 6.228 5 C 0.061 3.939 6 C -0.192 4.192 7 C -0.102 4.102 8 C -0.181 4.181 9 C -0.102 4.102 10 C -0.235 4.235 11 C 0.305 3.695 12 O -0.445 6.445 13 N -0.361 5.361 14 C -0.005 4.005 15 C 0.081 3.919 16 O -0.359 6.359 17 C -0.161 4.161 18 C 0.064 3.936 19 N -0.347 5.347 20 C -0.367 4.367 21 H 0.106 0.894 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.807 3.193 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.189 1.189 28 C -0.013 4.013 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.252 0.748 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.233 0.767 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.781 2.808 -26.566 27.138 hybrid contribution -1.139 0.684 0.755 1.528 sum 3.642 3.493 -25.811 26.300 Atomic orbital electron populations 1.22365 0.90677 1.04199 1.05760 1.22308 0.96971 0.97443 0.82219 0.85543 1.86171 1.81641 1.38379 1.16657 1.19354 0.96718 0.91404 0.86396 1.20695 1.04501 1.01837 0.92192 1.21282 0.97475 0.94347 0.97059 1.21467 1.01118 0.95739 0.99747 1.21351 0.96442 1.00525 0.91835 1.21565 1.06818 0.93527 1.01548 1.20558 0.79079 0.84974 0.84930 1.90732 1.41548 1.25144 1.87031 1.45657 1.57679 1.28296 1.04471 1.21782 1.00248 0.96219 0.82254 1.22373 0.92196 0.83758 0.93576 1.86630 1.72648 1.26424 1.50169 1.22799 1.00084 0.99440 0.93738 1.20826 0.86302 0.94843 0.91605 1.44632 1.19458 1.69300 1.01307 1.19470 0.96116 1.30454 0.90703 0.89423 1.25690 1.01339 1.02588 0.96724 1.70193 1.34661 1.52761 1.02589 0.85070 0.78626 0.78057 0.77512 1.21444 1.22502 1.18940 1.22375 0.93697 0.99268 0.85990 0.92141 0.87888 0.89122 0.85796 0.83303 0.83514 0.83203 0.83414 0.74765 0.90435 0.90445 0.76724 0.88811 0.89995 0.97400 0.97388 0.94547 0.92177 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.12 71.98 0.66 -1.66 16 2 C 0.07 1.24 2.64 29.85 0.08 1.32 16 3 H 0.13 1.48 6.32 -2.39 -0.02 1.47 16 4 O -0.31 -7.57 9.34 -73.46 -0.69 -8.26 16 5 C 0.11 2.13 6.60 22.51 0.15 2.28 16 6 C -0.17 -3.28 9.99 22.37 0.22 -3.06 16 7 C -0.08 -1.15 10.04 22.26 0.22 -0.93 16 8 C -0.16 -1.89 10.04 22.28 0.22 -1.66 16 9 C -0.08 -0.98 10.04 22.25 0.22 -0.76 16 10 C -0.22 -3.15 8.24 22.36 0.18 -2.96 16 11 C 0.52 12.43 7.18 87.66 0.63 13.06 16 12 O -0.57 -19.33 16.51 15.95 0.26 -19.07 16 13 N -0.71 -14.00 5.12 -463.06 -2.37 -16.37 16 14 C 0.12 2.99 4.90 86.38 0.42 3.41 16 15 C 0.12 3.75 0.95 -9.40 -0.01 3.74 16 16 O -0.55 -16.79 13.19 -148.98 -1.96 -18.76 16 17 C -0.12 -4.40 6.16 31.78 0.20 -4.20 16 18 C 0.19 9.38 5.37 86.73 0.47 9.84 16 19 N -0.62 -30.68 3.39 -691.99 -2.35 -33.02 16 20 C -0.24 -12.96 10.28 84.03 0.86 -12.09 16 21 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 22 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 23 N -0.95 -57.68 10.31 21.65 0.22 -57.46 16 24 Si 0.98 45.19 29.55 68.60 2.03 47.21 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 28 C 0.11 4.00 5.92 86.85 0.51 4.51 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 30 H 0.10 0.94 7.91 -2.39 -0.02 0.92 16 31 H 0.09 0.98 6.90 -2.39 -0.02 0.96 16 32 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 34 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.15 1.47 5.43 -2.91 -0.02 1.45 16 37 H 0.41 5.70 7.07 -92.71 -0.66 5.05 16 38 H 0.08 2.06 8.11 -2.39 -0.02 2.04 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.38 7.86 8.16 -74.05 -0.60 7.26 16 41 H 0.09 2.99 8.01 -2.38 -0.02 2.97 16 42 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.01 0.44 7.38 -2.39 -0.02 0.42 16 44 H 0.01 0.44 7.51 -2.39 -0.02 0.42 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.06 1.88 7.97 -2.39 -0.02 1.86 16 47 H 0.03 1.21 8.04 -2.38 -0.02 1.20 16 Total: -1.00 -79.70 383.29 0.39 -79.31 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.26 Total: 19.09 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.51 Total: 7.32 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.50 Total: -106.85 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.39 Total: -46.08 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -79.70 0.39 -79.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271221388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.942 kcal (2) G-P(sol) polarization free energy of solvation -79.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds