Wall clock time and date at job start Tue Mar 31 2020 18:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46922 * 2 1 4 4 O 1.42893 * 109.47420 * 239.99606 * 2 1 3 5 5 C 1.42903 * 114.00287 * 89.99808 * 4 2 1 6 6 C 1.50693 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.38231 * 120.00763 * 269.72814 * 6 5 4 8 8 C 1.38238 * 120.00506 * 179.76597 * 7 6 5 9 9 C 1.38239 * 119.99552 * 0.51030 * 8 7 6 10 10 C 1.38238 * 120.00021 * 359.74488 * 9 8 7 11 11 C 1.38228 * 120.00003 * 0.02562 * 10 9 8 12 12 C 1.50702 * 109.46879 * 119.99097 * 2 1 3 13 13 O 1.21282 * 119.99684 * 115.00252 * 12 2 1 14 14 N 1.34769 * 120.00461 * 295.00188 * 12 2 1 15 15 C 1.46500 * 120.00237 * 180.02562 * 14 12 2 16 16 C 1.53006 * 109.46998 * 180.02562 * 15 14 12 17 17 O 1.42899 * 112.94549 * 53.40745 * 16 15 14 18 18 C 1.53939 * 113.74068 * 281.67233 * 16 15 14 19 19 N 1.47583 * 86.11837 * 222.04976 * 18 16 15 20 20 C 1.36940 * 134.49291 * 204.64079 * 19 18 16 21 21 H 1.07993 * 119.99656 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99720 * 0.02562 * 20 19 18 23 23 N 1.31617 * 120.00315 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99361 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47100 * 60.00575 * 24 22 20 26 26 H 1.48501 * 109.46691 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47562 * 300.00019 * 24 22 20 28 28 C 1.47577 * 91.01317 * 24.64108 * 19 18 16 29 29 H 1.09001 * 109.47160 * 60.00785 * 1 2 3 30 30 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47491 * 300.00578 * 1 2 3 32 32 H 1.08999 * 109.46749 * 300.00269 * 5 4 2 33 33 H 1.09000 * 109.46578 * 60.00048 * 5 4 2 34 34 H 1.08008 * 119.99754 * 0.02562 * 7 6 5 35 35 H 1.07992 * 120.00021 * 180.22689 * 8 7 6 36 36 H 1.07992 * 119.99593 * 179.72044 * 9 8 7 37 37 H 1.08001 * 119.99438 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.00145 * 179.97438 * 11 10 9 39 39 H 0.97010 * 119.99854 * 0.02562 * 14 12 2 40 40 H 1.08993 * 109.47452 * 60.00368 * 15 14 12 41 41 H 1.09000 * 109.47175 * 300.00158 * 15 14 12 42 42 H 0.96699 * 113.99849 * 309.67013 * 17 16 15 43 43 H 1.08998 * 113.77404 * 336.35440 * 18 16 15 44 44 H 1.09003 * 113.77080 * 107.74888 * 18 16 15 45 45 H 0.97005 * 119.99656 * 179.97438 * 23 22 20 46 46 H 1.08997 * 113.77072 * 221.05467 * 28 19 18 47 47 H 1.08999 * 113.76757 * 89.66019 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1828 -2.2941 6 6 2.7015 -0.6284 -3.4608 7 6 4.0601 -0.7959 -3.6535 8 6 4.5199 -1.5441 -4.7210 9 6 3.6212 -2.1161 -5.6021 10 6 2.2627 -1.9442 -5.4125 11 6 1.8029 -1.2000 -4.3423 12 6 2.0322 -0.7102 1.2306 13 8 2.6529 -1.7465 1.1218 14 7 1.7918 -0.1939 2.4520 15 6 2.2806 -0.8841 3.6483 16 6 1.8751 -0.0941 4.8943 17 8 0.4740 0.1817 4.9476 18 6 2.7619 1.1348 5.1648 19 7 2.7134 0.7322 6.5839 20 6 2.8597 1.3929 7.7744 21 1 2.7766 0.8524 8.7056 22 6 3.1148 2.7574 7.7841 23 7 3.2155 3.4162 6.6491 24 14 3.3136 3.6587 9.4082 25 1 4.4525 3.0754 10.1618 26 1 3.5767 5.0967 9.1472 27 1 2.0691 3.5206 10.2066 28 6 2.4440 -0.6683 6.2045 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.2538 0.6544 -2.5588 33 1 2.9319 0.9512 -2.0450 34 1 4.7623 -0.3456 -2.9674 35 1 5.5812 -1.6779 -4.8693 36 1 3.9805 -2.6968 -6.4387 37 1 1.5607 -2.3908 -6.1012 38 1 0.7415 -1.0654 -4.1944 39 1 1.2950 0.6348 2.5391 40 1 3.3669 -0.9619 3.6046 41 1 1.8464 -1.8828 3.6944 42 1 0.1184 0.5698 4.1364 43 1 3.7555 1.0656 4.7222 44 1 2.2693 2.0855 4.9608 45 1 3.3934 4.3697 6.6561 46 1 1.6977 -1.1573 6.8306 47 1 3.3443 -1.2672 6.0673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271319912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:29 Heat of formation + Delta-G solvation = -41.153657 kcal Electronic energy + Delta-G solvation = -28023.099714 eV Core-core repulsion = 23980.287334 eV Total energy + Delta-G solvation = -4042.812380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.19955 -39.55486 -38.77676 -37.51658 -34.91871 -34.06025 -32.80972 -32.00531 -31.18279 -31.07543 -28.48166 -26.52247 -26.12212 -25.02774 -23.97715 -22.86212 -21.88226 -21.62936 -20.46577 -19.36199 -18.01815 -17.43921 -16.89117 -16.72131 -16.10167 -15.88574 -15.62115 -15.43667 -15.17353 -14.84866 -14.45249 -14.21439 -13.96705 -13.69524 -13.62103 -13.52221 -13.20863 -13.09493 -12.77966 -12.69846 -12.58169 -12.34365 -12.27046 -11.78239 -11.65760 -11.31980 -11.20325 -11.08321 -10.93764 -10.75548 -10.46664 -10.18500 -9.93602 -9.60642 -9.46283 -9.24899 -9.19072 -9.11602 -8.95199 -8.83615 -6.91983 -5.79264 -3.10810 0.96317 1.13233 2.62027 2.76667 3.39360 3.42857 3.43404 3.44205 3.89092 4.41782 4.42938 4.49447 4.50987 4.60039 4.68367 4.71939 4.79071 4.86114 4.95399 5.00164 5.01875 5.19897 5.23411 5.26134 5.31366 5.35496 5.42632 5.56559 5.67247 5.74055 5.75345 5.82061 6.02637 6.15484 6.22123 6.27823 6.30520 6.38853 6.50822 6.54596 6.69169 6.79913 6.98707 7.13869 7.46208 7.47666 7.94095 8.09287 8.23371 9.01831 9.68155 10.54156 11.38132 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.001937 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.957034 B =14448.504466 C =14745.034189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 H 0.089 0.911 4 O -0.349 6.349 5 C 0.099 3.901 6 C -0.089 4.089 7 C -0.095 4.095 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.125 4.125 11 C -0.098 4.098 12 C 0.514 3.486 13 O -0.520 6.520 14 N -0.722 5.722 15 C 0.104 3.896 16 C 0.064 3.936 17 O -0.525 6.525 18 C 0.144 3.856 19 N -0.602 5.602 20 C -0.218 4.218 21 H 0.081 0.919 22 C -0.009 4.009 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.136 3.864 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.398 0.602 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.361 0.639 43 H 0.034 0.966 44 H 0.078 0.922 45 H 0.254 0.746 46 H 0.056 0.944 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 -6.227 -24.538 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.106 0.894 4 O -0.268 6.268 5 C 0.023 3.977 6 C -0.089 4.089 7 C -0.113 4.113 8 C -0.142 4.142 9 C -0.133 4.133 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.299 3.701 13 O -0.395 6.395 14 N -0.377 5.377 15 C -0.020 4.020 16 C 0.021 3.979 17 O -0.329 6.329 18 C 0.018 3.982 19 N -0.328 5.328 20 C -0.346 4.346 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.009 3.991 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.233 0.767 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.207 0.793 43 H 0.052 0.948 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.682 -7.147 -23.782 25.104 hybrid contribution -0.054 1.443 0.331 1.482 sum -3.736 -5.703 -23.451 24.422 Atomic orbital electron populations 1.22239 0.93395 1.03926 1.03263 1.21922 0.95191 0.96467 0.85646 0.89351 1.88137 1.86519 1.33681 1.18432 1.21440 0.99790 0.91752 0.84745 1.19554 0.93708 1.00014 0.95589 1.21122 0.94969 0.97952 0.97289 1.21169 0.99868 0.97959 0.95161 1.21209 0.93470 0.99374 0.99281 1.21142 0.95775 0.99296 0.98135 1.21064 0.99465 0.96628 0.94435 1.20291 0.80044 0.85650 0.84133 1.90728 1.39255 1.23119 1.86367 1.45863 1.58244 1.27863 1.05681 1.22061 1.00380 0.96464 0.83099 1.23760 0.82670 0.98277 0.93207 1.86628 1.21292 1.84503 1.40450 1.22897 0.95006 0.95524 0.84737 1.45649 1.83548 1.01919 1.01662 1.18955 1.41790 0.90597 0.83245 0.90154 1.24767 1.02209 0.96277 0.97241 1.69786 1.55334 1.07991 1.24041 0.86163 0.78015 0.78726 0.82642 1.21166 1.21579 1.21046 1.22556 0.96254 0.89753 0.90516 0.91229 0.91000 0.90642 0.92132 0.92090 0.85789 0.85854 0.86047 0.85938 0.85927 0.76725 0.90233 0.91062 0.79331 0.94837 0.90393 0.93652 0.92623 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.07 0.72 3.13 -27.88 -0.09 0.63 16 3 H 0.09 0.71 7.79 -51.93 -0.40 0.31 16 4 O -0.35 -4.31 9.51 -55.09 -0.52 -4.84 16 5 C 0.10 0.90 5.87 36.00 0.21 1.11 16 6 C -0.09 -0.87 5.51 -104.63 -0.58 -1.45 16 7 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 8 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 9 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 10 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 11 C -0.10 -0.86 9.70 -39.58 -0.38 -1.25 16 12 C 0.51 7.16 7.18 -10.99 -0.08 7.08 16 13 O -0.52 -9.62 16.51 -14.30 -0.24 -9.86 16 14 N -0.72 -9.11 5.30 -60.29 -0.32 -9.43 16 15 C 0.10 1.58 5.28 -4.04 -0.02 1.56 16 16 C 0.06 1.14 1.52 -89.69 -0.14 1.01 16 17 O -0.53 -9.29 13.51 -35.23 -0.48 -9.77 16 18 C 0.14 3.24 6.92 -2.98 -0.02 3.22 16 19 N -0.60 -15.42 3.70 -177.81 -0.66 -16.08 16 20 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -27.06 11.38 55.49 0.63 -26.43 16 24 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.14 2.79 8.34 -2.98 -0.02 2.76 16 29 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 32 H 0.06 0.42 7.81 -51.93 -0.41 0.01 16 33 H 0.06 0.49 8.03 -51.93 -0.42 0.07 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 39 H 0.40 4.03 7.09 -40.82 -0.29 3.74 16 40 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.36 4.63 7.61 45.56 0.35 4.97 16 43 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 44 H 0.08 1.92 7.15 -51.93 -0.37 1.55 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -36.61 396.05 -9.78 -46.39 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.54 Total: 5.33 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.60 Total: 1.55 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.35 Total: -51.93 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.24 Total: -24.47 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.61 -9.78 -46.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271319912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.239 kcal (2) G-P(sol) polarization free energy of solvation -36.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds