Wall clock time and date at job start Tue Mar 31 2020 18:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46922 * 2 1 4 4 O 1.42893 * 109.47420 * 239.99606 * 2 1 3 5 5 C 1.42903 * 114.00287 * 89.99808 * 4 2 1 6 6 C 1.50693 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.38231 * 120.00763 * 269.72814 * 6 5 4 8 8 C 1.38238 * 120.00506 * 179.76597 * 7 6 5 9 9 C 1.38239 * 119.99552 * 0.51030 * 8 7 6 10 10 C 1.38238 * 120.00021 * 359.74488 * 9 8 7 11 11 C 1.38228 * 120.00003 * 0.02562 * 10 9 8 12 12 C 1.50702 * 109.46879 * 119.99097 * 2 1 3 13 13 O 1.21282 * 119.99684 * 115.00252 * 12 2 1 14 14 N 1.34769 * 120.00461 * 295.00188 * 12 2 1 15 15 C 1.46500 * 120.00237 * 180.02562 * 14 12 2 16 16 C 1.53006 * 109.46998 * 180.02562 * 15 14 12 17 17 O 1.42899 * 112.94549 * 53.40745 * 16 15 14 18 18 C 1.53939 * 113.74068 * 281.67233 * 16 15 14 19 19 N 1.47583 * 86.11837 * 222.04976 * 18 16 15 20 20 C 1.36940 * 134.49291 * 204.64079 * 19 18 16 21 21 H 1.07993 * 119.99656 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99720 * 0.02562 * 20 19 18 23 23 N 1.31617 * 120.00315 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99361 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47100 * 60.00575 * 24 22 20 26 26 H 1.48501 * 109.46691 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47562 * 300.00019 * 24 22 20 28 28 C 1.47577 * 91.01317 * 24.64108 * 19 18 16 29 29 H 1.09001 * 109.47160 * 60.00785 * 1 2 3 30 30 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47491 * 300.00578 * 1 2 3 32 32 H 1.08999 * 109.46749 * 300.00269 * 5 4 2 33 33 H 1.09000 * 109.46578 * 60.00048 * 5 4 2 34 34 H 1.08008 * 119.99754 * 0.02562 * 7 6 5 35 35 H 1.07992 * 120.00021 * 180.22689 * 8 7 6 36 36 H 1.07992 * 119.99593 * 179.72044 * 9 8 7 37 37 H 1.08001 * 119.99438 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.00145 * 179.97438 * 11 10 9 39 39 H 0.97010 * 119.99854 * 0.02562 * 14 12 2 40 40 H 1.08993 * 109.47452 * 60.00368 * 15 14 12 41 41 H 1.09000 * 109.47175 * 300.00158 * 15 14 12 42 42 H 0.96699 * 113.99849 * 309.67013 * 17 16 15 43 43 H 1.08998 * 113.77404 * 336.35440 * 18 16 15 44 44 H 1.09003 * 113.77080 * 107.74888 * 18 16 15 45 45 H 0.97005 * 119.99656 * 179.97438 * 23 22 20 46 46 H 1.08997 * 113.77072 * 221.05467 * 28 19 18 47 47 H 1.08999 * 113.76757 * 89.66019 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1828 -2.2941 6 6 2.7015 -0.6284 -3.4608 7 6 4.0601 -0.7959 -3.6535 8 6 4.5199 -1.5441 -4.7210 9 6 3.6212 -2.1161 -5.6021 10 6 2.2627 -1.9442 -5.4125 11 6 1.8029 -1.2000 -4.3423 12 6 2.0322 -0.7102 1.2306 13 8 2.6529 -1.7465 1.1218 14 7 1.7918 -0.1939 2.4520 15 6 2.2806 -0.8841 3.6483 16 6 1.8751 -0.0941 4.8943 17 8 0.4740 0.1817 4.9476 18 6 2.7619 1.1348 5.1648 19 7 2.7134 0.7322 6.5839 20 6 2.8597 1.3929 7.7744 21 1 2.7766 0.8524 8.7056 22 6 3.1148 2.7574 7.7841 23 7 3.2155 3.4162 6.6491 24 14 3.3136 3.6587 9.4082 25 1 4.4525 3.0754 10.1618 26 1 3.5767 5.0967 9.1472 27 1 2.0691 3.5206 10.2066 28 6 2.4440 -0.6683 6.2045 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.2538 0.6544 -2.5588 33 1 2.9319 0.9512 -2.0450 34 1 4.7623 -0.3456 -2.9674 35 1 5.5812 -1.6779 -4.8693 36 1 3.9805 -2.6968 -6.4387 37 1 1.5607 -2.3908 -6.1012 38 1 0.7415 -1.0654 -4.1944 39 1 1.2950 0.6348 2.5391 40 1 3.3669 -0.9619 3.6046 41 1 1.8464 -1.8828 3.6944 42 1 0.1184 0.5698 4.1364 43 1 3.7555 1.0656 4.7222 44 1 2.2693 2.0855 4.9608 45 1 3.3934 4.3697 6.6561 46 1 1.6977 -1.1573 6.8306 47 1 3.3443 -1.2672 6.0673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271319912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:28 Heat of formation + Delta-G solvation = -67.374285 kcal Electronic energy + Delta-G solvation = -28024.236726 eV Core-core repulsion = 23980.287334 eV Total energy + Delta-G solvation = -4043.949391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32891 -40.44822 -40.02061 -38.42387 -36.49706 -35.33663 -34.04130 -33.47142 -31.87601 -31.79083 -30.08492 -27.79238 -27.12808 -26.74423 -25.01799 -23.56711 -23.47354 -22.26360 -21.55049 -20.95570 -19.17867 -18.63065 -18.23217 -17.61515 -17.27617 -17.02098 -16.70537 -16.53049 -16.24552 -16.06439 -15.76719 -15.49276 -15.29450 -15.01106 -14.57794 -14.45328 -14.27059 -14.23101 -13.89004 -13.81247 -13.55306 -13.34862 -13.26960 -12.98732 -12.94628 -12.80629 -12.53939 -12.41858 -12.26388 -11.92247 -11.84149 -11.76240 -11.42239 -11.03467 -10.95913 -10.72278 -10.50976 -10.18245 -9.82424 -9.76372 -8.93645 -7.91382 -5.23833 0.31947 0.49853 1.45420 1.48807 1.54523 1.54576 1.80554 2.46480 2.69394 3.05801 3.17048 3.28306 3.34416 3.53997 3.68167 3.87248 3.89112 3.90049 3.99998 4.10924 4.15380 4.28722 4.35277 4.37007 4.40111 4.63970 4.68314 4.73346 4.74909 4.76405 4.78258 4.84550 4.95486 5.07485 5.15081 5.16910 5.23352 5.27014 5.33252 5.49346 5.54364 5.60642 5.66160 5.92278 6.03287 6.10636 6.46027 6.84700 6.91691 7.16722 7.58986 8.52423 9.25148 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.001937 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.957034 B =14448.504466 C =14745.034189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.072 3.928 3 H 0.115 0.885 4 O -0.381 6.381 5 C 0.097 3.903 6 C -0.109 4.109 7 C -0.118 4.118 8 C -0.135 4.135 9 C -0.122 4.122 10 C -0.132 4.132 11 C -0.109 4.109 12 C 0.512 3.488 13 O -0.571 6.571 14 N -0.710 5.710 15 C 0.119 3.881 16 C 0.101 3.899 17 O -0.538 6.538 18 C 0.144 3.856 19 N -0.635 5.635 20 C -0.235 4.235 21 H 0.081 0.919 22 C -0.066 4.066 23 N -0.951 5.951 24 Si 0.980 3.020 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.128 3.872 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.413 0.587 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.384 0.616 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.249 0.751 46 H 0.058 0.942 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 -6.248 -25.561 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 H 0.133 0.867 4 O -0.300 6.300 5 C 0.021 3.979 6 C -0.109 4.109 7 C -0.136 4.136 8 C -0.153 4.153 9 C -0.139 4.139 10 C -0.149 4.149 11 C -0.127 4.127 12 C 0.299 3.701 13 O -0.450 6.450 14 N -0.365 5.365 15 C -0.006 4.006 16 C 0.058 3.942 17 O -0.345 6.345 18 C 0.018 3.982 19 N -0.362 5.362 20 C -0.363 4.363 21 H 0.099 0.901 22 C -0.259 4.259 23 N -0.600 5.600 24 Si 0.807 3.193 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.002 3.998 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.250 0.750 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.233 0.767 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.909 -7.164 -24.823 26.299 hybrid contribution 0.313 1.392 0.601 1.548 sum -4.596 -5.772 -24.222 25.321 Atomic orbital electron populations 1.22247 0.91144 1.03581 1.05305 1.22034 0.96704 0.96710 0.83482 0.86733 1.88096 1.86943 1.35438 1.19511 1.21600 1.01193 0.91419 0.83661 1.19799 0.94008 1.00813 0.96298 1.21312 0.95324 0.98890 0.98049 1.21445 1.00983 0.97792 0.95045 1.21551 0.93535 0.99168 0.99686 1.21495 0.96378 0.98857 0.98210 1.21336 1.00171 0.96648 0.94555 1.21022 0.78880 0.85033 0.85148 1.90704 1.41651 1.25521 1.87088 1.45717 1.57872 1.28115 1.04831 1.21722 0.99921 0.96312 0.82674 1.23101 0.82230 0.95474 0.93416 1.86581 1.20653 1.84698 1.42556 1.22847 0.95347 0.96295 0.83718 1.46035 1.83765 1.04377 1.01988 1.19333 1.41103 0.91258 0.84612 0.90113 1.25595 1.02674 0.97104 1.00538 1.69958 1.56488 1.07772 1.25792 0.85142 0.78136 0.77093 0.78882 1.20457 1.21800 1.20362 1.22797 0.97256 0.87998 0.91701 0.89035 0.92505 0.88777 0.89746 0.91470 0.85979 0.84424 0.83814 0.83718 0.84507 0.75026 0.91107 0.90368 0.76709 0.95689 0.92914 0.94196 0.92384 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.48 71.98 0.68 -1.47 16 2 C 0.07 1.36 3.13 29.85 0.09 1.45 16 3 H 0.12 1.55 7.79 -2.38 -0.02 1.53 16 4 O -0.38 -9.06 9.51 -129.99 -1.24 -10.29 16 5 C 0.10 1.65 5.87 71.23 0.42 2.07 16 6 C -0.11 -2.09 5.51 -19.87 -0.11 -2.20 16 7 C -0.12 -2.29 9.70 22.27 0.22 -2.08 16 8 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 9 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 10 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 11 C -0.11 -1.80 9.70 22.27 0.22 -1.59 16 12 C 0.51 13.74 7.18 87.66 0.63 14.37 16 13 O -0.57 -21.18 16.51 15.95 0.26 -20.92 16 14 N -0.71 -16.81 5.30 -463.06 -2.45 -19.26 16 15 C 0.12 3.45 5.28 86.38 0.46 3.91 16 16 C 0.10 3.51 1.52 -10.13 -0.02 3.50 16 17 O -0.54 -18.08 13.51 -148.98 -2.01 -20.10 16 18 C 0.14 6.49 6.92 86.48 0.60 7.08 16 19 N -0.64 -32.67 3.70 -720.29 -2.66 -35.33 16 20 C -0.23 -13.35 10.70 84.03 0.90 -12.45 16 21 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 22 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 23 N -0.95 -56.49 11.38 21.65 0.25 -56.24 16 24 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 28 C 0.13 5.16 8.34 86.48 0.72 5.88 16 29 H 0.09 0.82 7.87 -2.39 -0.02 0.80 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 0.86 7.92 -2.39 -0.02 0.84 16 32 H 0.08 0.98 7.81 -2.39 -0.02 0.96 16 33 H 0.07 1.01 8.03 -2.39 -0.02 0.99 16 34 H 0.12 2.26 8.06 -2.91 -0.02 2.23 16 35 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.41 7.42 7.09 -92.70 -0.66 6.76 16 40 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 41 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 42 H 0.38 8.88 7.61 -74.06 -0.56 8.32 16 43 H 0.03 1.17 8.03 -2.39 -0.02 1.15 16 44 H 0.05 2.64 7.15 -2.39 -0.02 2.62 16 45 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 Total: -1.00 -80.52 396.05 -0.12 -80.64 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.24 Total: 23.73 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.94 Total: 9.94 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.87 Total: -110.84 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -2.98 Total: -51.31 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -80.52 -0.12 -80.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271319912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.265 kcal (2) G-P(sol) polarization free energy of solvation -80.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds