Wall clock time and date at job start Tue Mar 31 2020 18:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46830 * 2 1 4 4 O 1.42894 * 109.47167 * 239.99961 * 2 1 3 5 5 C 1.35906 * 117.00009 * 85.08544 * 4 2 1 6 6 C 1.38733 * 120.05166 * 174.24079 * 5 4 2 7 7 C 1.38150 * 119.94027 * 179.74468 * 6 5 4 8 8 C 1.38264 * 120.05611 * 0.50855 * 7 6 5 9 9 C 1.38276 * 120.10968 * 359.76173 * 8 7 6 10 10 C 1.38138 * 120.05357 * 359.97438 * 9 8 7 11 11 C 1.50699 * 109.47201 * 119.99517 * 2 1 3 12 12 O 1.21286 * 119.99520 * 111.94410 * 11 2 1 13 13 N 1.34773 * 120.00123 * 291.93712 * 11 2 1 14 14 C 1.47161 * 120.97937 * 174.98140 * 13 11 2 15 15 C 1.53289 * 108.38295 * 129.49176 * 14 13 11 16 16 O 1.42963 * 109.22835 * 52.29867 * 15 14 13 17 17 C 1.42965 * 114.16386 * 297.42211 * 16 15 14 18 18 H 1.08995 * 109.55184 * 302.62531 * 17 16 15 19 19 C 1.52997 * 109.50784 * 182.50090 * 17 16 15 20 20 N 1.46500 * 109.47083 * 65.25326 * 19 17 16 21 21 C 1.36941 * 120.00064 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99655 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00223 * 179.72310 * 21 20 19 24 24 N 1.31622 * 120.00040 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00443 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46916 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47438 * 120.00086 * 25 23 21 28 28 H 1.48506 * 109.47402 * 240.00589 * 25 23 21 29 29 C 1.47149 * 120.98371 * 355.00452 * 13 11 2 30 30 H 1.08994 * 109.47045 * 185.83014 * 1 2 3 31 31 H 1.09003 * 109.47048 * 305.82926 * 1 2 3 32 32 H 1.08993 * 109.47476 * 65.82655 * 1 2 3 33 33 H 1.08004 * 120.03270 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.96920 * 180.27365 * 7 6 5 35 35 H 1.07997 * 119.94649 * 179.74702 * 8 7 6 36 36 H 1.08000 * 119.96984 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.02298 * 179.97438 * 10 9 8 38 38 H 1.09001 * 109.67747 * 249.21072 * 14 13 11 39 39 H 1.08998 * 109.68036 * 9.76429 * 14 13 11 40 40 H 1.08997 * 109.51011 * 172.22593 * 15 14 13 41 41 H 1.09006 * 109.51315 * 292.32364 * 15 14 13 42 42 H 1.08992 * 109.47458 * 305.25307 * 19 17 16 43 43 H 1.09002 * 109.47245 * 185.25074 * 19 17 16 44 44 H 0.97003 * 120.00440 * 359.97438 * 20 19 17 45 45 H 0.96993 * 120.00642 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.68197 * 110.78870 * 29 13 11 47 47 H 1.08994 * 109.70967 * 350.25446 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1142 0.0631 -2.3037 6 6 2.6812 -0.4935 -3.4410 7 6 2.7849 0.2557 -4.5970 8 6 2.3338 1.5625 -4.6181 9 6 1.7734 2.1213 -3.4842 10 6 1.6625 1.3745 -2.3274 11 6 2.0323 -0.7103 1.2305 12 8 2.6046 -1.7745 1.1252 13 7 1.8459 -0.1629 2.4479 14 6 2.2287 -0.8868 3.6706 15 6 3.0844 0.0450 4.5362 16 8 2.3929 1.2825 4.7213 17 6 2.1563 2.0072 3.5118 18 1 3.1048 2.2010 3.0112 19 6 1.4699 3.3352 3.8379 20 7 2.3814 4.1778 4.6160 21 6 1.9824 5.4225 5.0246 22 1 0.9957 5.7827 4.7736 23 6 2.8439 6.2186 5.7667 24 7 4.0444 5.7775 6.0773 25 14 2.2995 7.9162 6.3247 26 1 0.9164 8.1736 5.8492 27 1 2.3343 7.9846 7.8077 28 1 3.2150 8.9401 5.7603 29 6 1.2530 1.1759 2.5937 30 1 -0.3633 -1.0223 0.1044 31 1 -0.3633 0.6016 0.8332 32 1 -0.3634 0.4208 -0.9375 33 1 3.0378 -1.5128 -3.4237 34 1 3.2222 -0.1785 -5.4839 35 1 2.4194 2.1479 -5.5216 36 1 1.4221 3.1424 -3.5031 37 1 1.2250 1.8116 -1.4419 38 1 1.3336 -1.1789 4.2197 39 1 2.8042 -1.7742 3.4068 40 1 3.2632 -0.4206 5.5054 41 1 4.0371 0.2302 4.0400 42 1 0.5670 3.1447 4.4179 43 1 1.2058 3.8448 2.9113 44 1 3.2675 3.8542 4.8418 45 1 4.6466 6.3339 6.5956 46 1 0.2597 1.0915 3.0345 47 1 1.1818 1.6548 1.6172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280667036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:26 Heat of formation + Delta-G solvation = -61.813875 kcal Electronic energy + Delta-G solvation = -29012.288333 eV Core-core repulsion = 24968.580059 eV Total energy + Delta-G solvation = -4043.708274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10362 -40.02644 -38.51881 -37.44226 -35.05508 -34.71474 -32.77381 -32.05585 -31.09402 -30.22413 -29.86245 -28.23155 -25.73102 -25.12901 -23.60879 -23.05414 -22.65247 -21.80072 -20.95373 -19.47095 -18.79435 -17.35939 -17.24495 -16.81527 -16.40107 -16.09303 -16.06503 -15.46172 -15.27544 -15.05708 -14.74943 -14.49816 -14.43677 -14.03046 -13.74453 -13.54784 -13.38425 -13.17672 -12.87574 -12.77340 -12.69727 -12.53294 -12.26510 -12.17108 -11.84450 -11.70249 -11.37316 -11.10210 -11.06101 -10.94800 -10.85348 -10.52429 -10.10253 -9.98896 -9.89653 -9.73945 -9.28133 -8.92981 -8.67305 -8.48495 -6.95693 -5.77984 -3.07538 1.05265 1.16143 2.19560 2.28725 3.13391 3.42000 3.47137 3.49822 3.51526 3.86216 3.99989 4.32294 4.48267 4.51572 4.58129 4.61598 4.68685 4.80914 4.85646 4.97733 5.02138 5.08368 5.10823 5.17033 5.22758 5.24976 5.32336 5.38469 5.51458 5.54782 5.66969 5.68841 5.72734 5.76884 5.83055 6.01725 6.12568 6.14224 6.18021 6.25891 6.41985 6.46640 6.58976 6.99036 7.12864 7.37504 7.66818 7.84239 8.39624 9.51568 10.07690 10.42868 11.44665 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.002837 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.115575 B = 9866.950284 C =11671.544437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.067 3.933 3 H 0.100 0.900 4 O -0.286 6.286 5 C 0.130 3.870 6 C -0.150 4.150 7 C -0.081 4.081 8 C -0.160 4.160 9 C -0.078 4.078 10 C -0.211 4.211 11 C 0.524 3.476 12 O -0.520 6.520 13 N -0.609 5.609 14 C 0.079 3.921 15 C 0.046 3.954 16 O -0.356 6.356 17 C 0.072 3.928 18 H 0.065 0.935 19 C 0.163 3.837 20 N -0.726 5.726 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.075 3.925 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.387 0.613 45 H 0.255 0.745 46 H 0.087 0.913 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 -13.451 -17.818 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.007 3.993 3 H 0.118 0.882 4 O -0.198 6.198 5 C 0.084 3.916 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.178 4.178 9 C -0.096 4.096 10 C -0.230 4.230 11 C 0.311 3.689 12 O -0.394 6.394 13 N -0.344 5.344 14 C -0.043 4.043 15 C -0.032 4.032 16 O -0.274 6.274 17 C 0.012 3.988 18 H 0.083 0.917 19 C 0.035 3.965 20 N -0.371 5.371 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.049 4.049 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.221 0.779 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.335 -14.035 -17.634 23.411 hybrid contribution 0.050 1.009 0.298 1.054 sum -6.285 -13.025 -17.337 22.577 Atomic orbital electron populations 1.22390 0.92212 1.04572 1.04370 1.22189 0.96055 0.97081 0.83986 0.88232 1.86193 1.81009 1.36902 1.15738 1.19094 0.95426 0.90416 0.86641 1.20475 1.03600 1.01527 0.91279 1.20985 0.97844 0.94038 0.97058 1.21098 1.02059 0.95834 0.98820 1.20997 0.96886 0.99516 0.92196 1.21344 1.07020 0.94239 1.00370 1.20012 0.79384 0.85777 0.83755 1.90724 1.40834 1.22169 1.85720 1.48027 1.62693 1.18283 1.05429 1.22404 1.00700 0.96502 0.84700 1.22948 0.94390 0.85364 1.00477 1.88172 1.77073 1.32424 1.29690 1.22804 0.98030 0.92265 0.85651 0.91701 1.20620 0.93683 0.86601 0.95587 1.42238 1.15554 1.15436 1.63878 1.19244 0.98898 0.91592 1.27513 0.91066 1.24758 0.96336 0.98840 1.00952 1.69680 1.07319 1.37240 1.43603 0.86115 0.77600 0.84228 0.78196 1.20526 1.21833 1.21871 1.22658 0.98410 0.82097 1.01698 0.90662 0.89711 0.90284 0.85099 0.85339 0.85867 0.85541 0.85198 0.90308 0.88168 0.87547 0.92704 0.95171 0.94801 0.77853 0.93525 0.89528 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 8.83 37.16 0.33 -1.16 16 2 C 0.07 0.73 1.80 -27.88 -0.05 0.68 16 3 H 0.10 0.96 5.17 -51.92 -0.27 0.69 16 4 O -0.29 -3.70 9.34 -39.23 -0.37 -4.07 16 5 C 0.13 1.47 6.58 -39.22 -0.26 1.22 16 6 C -0.15 -1.54 9.99 -39.43 -0.39 -1.94 16 7 C -0.08 -0.69 10.04 -39.60 -0.40 -1.08 16 8 C -0.16 -1.31 10.04 -39.56 -0.40 -1.71 16 9 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 10 C -0.21 -2.06 8.22 -39.44 -0.32 -2.39 16 11 C 0.52 7.05 7.06 -10.99 -0.08 6.97 16 12 O -0.52 -8.82 15.99 -14.23 -0.23 -9.05 16 13 N -0.61 -7.41 3.02 -172.28 -0.52 -7.93 16 14 C 0.08 0.92 6.65 -3.53 -0.02 0.90 16 15 C 0.05 0.60 6.98 37.31 0.26 0.86 16 16 O -0.36 -5.95 10.33 -35.23 -0.36 -6.31 16 17 C 0.07 1.10 2.81 -26.58 -0.07 1.03 16 18 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 19 C 0.16 3.05 5.93 -4.04 -0.02 3.03 16 20 N -0.73 -18.12 5.55 -59.91 -0.33 -18.45 16 21 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 25 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 C 0.07 0.84 4.52 -3.54 -0.02 0.83 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.58 6.23 -51.93 -0.32 0.26 16 32 H 0.08 0.58 7.00 -51.93 -0.36 0.22 16 33 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 1.07 5.51 -52.48 -0.29 0.79 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.19 7.06 -51.93 -0.37 0.82 16 40 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.39 10.41 7.67 -40.82 -0.31 10.10 16 45 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.09 0.83 5.22 -51.93 -0.27 0.56 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -34.77 380.53 -9.28 -44.06 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.82 Total: 7.37 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.09 Total: -1.08 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.13 Total: -53.76 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.96 Total: -19.43 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.77 -9.28 -44.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280667036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.759 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds