Wall clock time and date at job start Tue Mar 31 2020 18:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46830 * 2 1 4 4 O 1.42894 * 109.47167 * 239.99961 * 2 1 3 5 5 C 1.35906 * 117.00009 * 85.08544 * 4 2 1 6 6 C 1.38733 * 120.05166 * 174.24079 * 5 4 2 7 7 C 1.38150 * 119.94027 * 179.74468 * 6 5 4 8 8 C 1.38264 * 120.05611 * 0.50855 * 7 6 5 9 9 C 1.38276 * 120.10968 * 359.76173 * 8 7 6 10 10 C 1.38138 * 120.05357 * 359.97438 * 9 8 7 11 11 C 1.50699 * 109.47201 * 119.99517 * 2 1 3 12 12 O 1.21286 * 119.99520 * 111.94410 * 11 2 1 13 13 N 1.34773 * 120.00123 * 291.93712 * 11 2 1 14 14 C 1.47161 * 120.97937 * 174.98140 * 13 11 2 15 15 C 1.53289 * 108.38295 * 129.49176 * 14 13 11 16 16 O 1.42963 * 109.22835 * 52.29867 * 15 14 13 17 17 C 1.42965 * 114.16386 * 297.42211 * 16 15 14 18 18 H 1.08995 * 109.55184 * 302.62531 * 17 16 15 19 19 C 1.52997 * 109.50784 * 182.50090 * 17 16 15 20 20 N 1.46500 * 109.47083 * 65.25326 * 19 17 16 21 21 C 1.36941 * 120.00064 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99655 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00223 * 179.72310 * 21 20 19 24 24 N 1.31622 * 120.00040 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00443 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46916 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47438 * 120.00086 * 25 23 21 28 28 H 1.48506 * 109.47402 * 240.00589 * 25 23 21 29 29 C 1.47149 * 120.98371 * 355.00452 * 13 11 2 30 30 H 1.08994 * 109.47045 * 185.83014 * 1 2 3 31 31 H 1.09003 * 109.47048 * 305.82926 * 1 2 3 32 32 H 1.08993 * 109.47476 * 65.82655 * 1 2 3 33 33 H 1.08004 * 120.03270 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.96920 * 180.27365 * 7 6 5 35 35 H 1.07997 * 119.94649 * 179.74702 * 8 7 6 36 36 H 1.08000 * 119.96984 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.02298 * 179.97438 * 10 9 8 38 38 H 1.09001 * 109.67747 * 249.21072 * 14 13 11 39 39 H 1.08998 * 109.68036 * 9.76429 * 14 13 11 40 40 H 1.08997 * 109.51011 * 172.22593 * 15 14 13 41 41 H 1.09006 * 109.51315 * 292.32364 * 15 14 13 42 42 H 1.08992 * 109.47458 * 305.25307 * 19 17 16 43 43 H 1.09002 * 109.47245 * 185.25074 * 19 17 16 44 44 H 0.97003 * 120.00440 * 359.97438 * 20 19 17 45 45 H 0.96993 * 120.00642 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.68197 * 110.78870 * 29 13 11 47 47 H 1.08994 * 109.70967 * 350.25446 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1142 0.0631 -2.3037 6 6 2.6812 -0.4935 -3.4410 7 6 2.7849 0.2557 -4.5970 8 6 2.3338 1.5625 -4.6181 9 6 1.7734 2.1213 -3.4842 10 6 1.6625 1.3745 -2.3274 11 6 2.0323 -0.7103 1.2305 12 8 2.6046 -1.7745 1.1252 13 7 1.8459 -0.1629 2.4479 14 6 2.2287 -0.8868 3.6706 15 6 3.0844 0.0450 4.5362 16 8 2.3929 1.2825 4.7213 17 6 2.1563 2.0072 3.5118 18 1 3.1048 2.2010 3.0112 19 6 1.4699 3.3352 3.8379 20 7 2.3814 4.1778 4.6160 21 6 1.9824 5.4225 5.0246 22 1 0.9957 5.7827 4.7736 23 6 2.8439 6.2186 5.7667 24 7 4.0444 5.7775 6.0773 25 14 2.2995 7.9162 6.3247 26 1 0.9164 8.1736 5.8492 27 1 2.3343 7.9846 7.8077 28 1 3.2150 8.9401 5.7603 29 6 1.2530 1.1759 2.5937 30 1 -0.3633 -1.0223 0.1044 31 1 -0.3633 0.6016 0.8332 32 1 -0.3634 0.4208 -0.9375 33 1 3.0378 -1.5128 -3.4237 34 1 3.2222 -0.1785 -5.4839 35 1 2.4194 2.1479 -5.5216 36 1 1.4221 3.1424 -3.5031 37 1 1.2250 1.8116 -1.4419 38 1 1.3336 -1.1789 4.2197 39 1 2.8042 -1.7742 3.4068 40 1 3.2632 -0.4206 5.5054 41 1 4.0371 0.2302 4.0400 42 1 0.5670 3.1447 4.4179 43 1 1.2058 3.8448 2.9113 44 1 3.2675 3.8542 4.8418 45 1 4.6466 6.3339 6.5956 46 1 0.2597 1.0915 3.0345 47 1 1.1818 1.6548 1.6172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280667036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:25 Heat of formation + Delta-G solvation = -84.466252 kcal Electronic energy + Delta-G solvation = -29013.270613 eV Core-core repulsion = 24968.580059 eV Total energy + Delta-G solvation = -4044.690555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.02855 -40.92458 -39.60034 -38.26440 -36.57573 -36.03675 -34.02337 -33.28511 -31.91592 -31.60344 -30.61342 -29.40015 -27.23921 -25.96076 -24.95399 -24.15705 -23.55581 -22.80382 -22.16173 -20.43202 -19.58798 -19.19591 -18.30973 -17.87520 -17.45716 -17.02426 -16.82499 -16.71404 -16.32172 -16.25898 -15.90856 -15.66823 -15.47260 -15.10594 -15.00460 -14.54341 -14.38529 -14.35438 -14.14819 -13.98730 -13.63225 -13.49548 -13.24234 -13.02183 -12.91615 -12.80696 -12.63369 -12.46462 -12.26458 -12.12733 -12.01321 -11.85652 -11.78463 -11.60552 -11.22755 -10.94642 -10.90155 -9.95434 -9.74261 -9.21496 -8.97389 -7.91634 -5.20677 0.38387 0.45847 1.24133 1.32348 1.50307 1.51223 1.61140 2.28514 2.58668 2.72425 2.83684 3.09768 3.43367 3.48912 3.53960 3.75469 3.82240 3.90849 3.96445 3.98289 4.04036 4.11208 4.28289 4.31652 4.35733 4.38892 4.46639 4.50577 4.57501 4.60573 4.62337 4.68599 4.74607 4.80873 4.97897 5.04429 5.08703 5.11997 5.18094 5.33889 5.47923 5.52764 5.60509 5.81003 6.03238 6.20125 6.29851 6.36024 6.82836 7.36141 8.11677 8.33477 9.32424 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.002837 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.115575 B = 9866.950284 C =11671.544437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.067 3.933 3 H 0.114 0.886 4 O -0.313 6.313 5 C 0.105 3.895 6 C -0.171 4.171 7 C -0.083 4.083 8 C -0.161 4.161 9 C -0.085 4.085 10 C -0.218 4.218 11 C 0.521 3.479 12 O -0.563 6.563 13 N -0.605 5.605 14 C 0.082 3.918 15 C 0.046 3.954 16 O -0.385 6.385 17 C 0.076 3.924 18 H 0.050 0.950 19 C 0.160 3.840 20 N -0.744 5.744 21 C -0.239 4.239 22 H 0.083 0.917 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.974 3.026 26 H -0.261 1.261 27 H -0.297 1.297 28 H -0.295 1.295 29 C 0.083 3.917 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.043 0.957 42 H 0.034 0.966 43 H 0.059 0.941 44 H 0.373 0.627 45 H 0.249 0.751 46 H 0.108 0.892 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.605 -12.458 -19.304 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.131 0.869 4 O -0.226 6.226 5 C 0.060 3.940 6 C -0.189 4.189 7 C -0.100 4.100 8 C -0.179 4.179 9 C -0.102 4.102 10 C -0.236 4.236 11 C 0.309 3.691 12 O -0.441 6.441 13 N -0.340 5.340 14 C -0.040 4.040 15 C -0.031 4.031 16 O -0.303 6.303 17 C 0.018 3.982 18 H 0.068 0.932 19 C 0.033 3.967 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.101 0.899 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.803 3.197 26 H -0.185 1.185 27 H -0.225 1.225 28 H -0.222 1.222 29 C -0.039 4.039 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.204 0.796 45 H 0.058 0.942 46 H 0.126 0.874 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.472 -13.043 -19.148 24.669 hybrid contribution 0.702 0.642 0.699 1.181 sum -7.770 -12.400 -18.449 23.548 Atomic orbital electron populations 1.22390 0.90025 1.04589 1.05844 1.22309 0.97577 0.96922 0.82437 0.86862 1.86150 1.81737 1.38159 1.16595 1.19353 0.96893 0.91322 0.86445 1.20698 1.04314 1.01902 0.92033 1.21300 0.97354 0.94231 0.97154 1.21474 1.00977 0.95824 0.99660 1.21351 0.96514 1.00458 0.91921 1.21544 1.06984 0.93656 1.01429 1.20534 0.78536 0.85365 0.84646 1.90699 1.42867 1.24215 1.86348 1.48076 1.62148 1.18435 1.05302 1.22397 1.01190 0.95902 0.84516 1.23071 0.93838 0.84455 1.01716 1.88117 1.77628 1.33838 1.30764 1.22656 0.97959 0.91711 0.85908 0.93225 1.20841 0.92805 0.87519 0.95537 1.42490 1.15927 1.15620 1.64621 1.19712 0.98980 0.92409 1.26001 0.89893 1.25604 0.96635 1.02793 1.02150 1.69846 1.08655 1.38619 1.45184 0.85063 0.77924 0.79659 0.77049 1.18491 1.22484 1.22220 1.22671 0.97956 0.81040 1.02282 0.91537 0.87707 0.89089 0.85485 0.83027 0.83434 0.83404 0.83870 0.88537 0.88528 0.85814 0.93815 0.94801 0.92361 0.79587 0.94192 0.87391 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 8.83 71.98 0.64 -1.83 16 2 C 0.07 1.38 1.80 29.85 0.05 1.44 16 3 H 0.11 1.96 5.17 -2.38 -0.01 1.95 16 4 O -0.31 -8.11 9.34 -73.58 -0.69 -8.80 16 5 C 0.10 2.33 6.58 22.50 0.15 2.48 16 6 C -0.17 -3.49 9.99 22.37 0.22 -3.26 16 7 C -0.08 -1.27 10.04 22.25 0.22 -1.05 16 8 C -0.16 -2.25 10.04 22.28 0.22 -2.03 16 9 C -0.08 -1.26 10.04 22.25 0.22 -1.04 16 10 C -0.22 -3.87 8.22 22.36 0.18 -3.69 16 11 C 0.52 13.68 7.06 87.66 0.62 14.30 16 12 O -0.56 -19.46 15.99 15.87 0.25 -19.21 16 13 N -0.61 -13.87 3.02 -817.36 -2.47 -16.34 16 14 C 0.08 1.84 6.65 86.35 0.57 2.41 16 15 C 0.05 1.19 6.98 72.08 0.50 1.69 16 16 O -0.38 -12.65 10.33 -148.98 -1.54 -14.19 16 17 C 0.08 2.26 2.81 30.69 0.09 2.35 16 18 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 19 C 0.16 5.68 5.93 86.38 0.51 6.19 16 20 N -0.74 -36.86 5.55 -343.46 -1.91 -38.77 16 21 C -0.24 -12.97 9.99 84.03 0.84 -12.13 16 22 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 24 N -0.97 -59.77 13.06 21.65 0.28 -59.48 16 25 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 26 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 C 0.08 1.66 4.52 86.35 0.39 2.05 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.05 6.23 -2.39 -0.01 1.03 16 32 H 0.09 1.11 7.00 -2.39 -0.02 1.10 16 33 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.14 2.00 5.51 -2.91 -0.02 1.99 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 2.28 7.06 -2.39 -0.02 2.26 16 40 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.37 20.38 7.67 -92.71 -0.71 19.67 16 45 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 46 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.12 1.72 5.22 -2.39 -0.01 1.71 16 Total: -1.00 -76.77 380.53 2.15 -74.62 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.28 Total: 30.93 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.91 Total: 3.81 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -4.09 Total: -114.59 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.97 Total: -42.20 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.77 2.15 -74.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280667036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.843 kcal (2) G-P(sol) polarization free energy of solvation -76.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds