Wall clock time and date at job start Tue Mar 31 2020 18:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46747 * 2 1 4 4 O 1.42892 * 109.47530 * 120.00371 * 2 1 3 5 5 C 1.35904 * 116.99710 * 275.10802 * 4 2 1 6 6 C 1.38733 * 120.05629 * 5.12737 * 5 4 2 7 7 C 1.38150 * 119.94080 * 179.74446 * 6 5 4 8 8 C 1.38268 * 120.05385 * 0.50353 * 7 6 5 9 9 C 1.38252 * 120.11407 * 359.76895 * 8 7 6 10 10 C 1.38146 * 120.05980 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.46744 * 240.00286 * 2 1 3 12 12 O 1.21279 * 120.00235 * 255.72670 * 11 2 1 13 13 N 1.34777 * 120.00100 * 75.73555 * 11 2 1 14 14 C 1.47153 * 120.98186 * 355.08176 * 13 11 2 15 15 C 1.53292 * 108.38523 * 230.51756 * 14 13 11 16 16 O 1.42964 * 109.22215 * 307.69738 * 15 14 13 17 17 C 1.42957 * 114.16705 * 62.58588 * 16 15 14 18 18 H 1.08995 * 109.51790 * 57.34080 * 17 16 15 19 19 C 1.53001 * 109.51288 * 177.44607 * 17 16 15 20 20 N 1.46494 * 109.46895 * 299.99552 * 19 17 16 21 21 C 1.36941 * 120.00181 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99846 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00213 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00058 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99934 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47127 * 90.00169 * 25 23 21 27 27 H 1.48506 * 109.47155 * 210.00045 * 25 23 21 28 28 H 1.48502 * 109.47077 * 330.00110 * 25 23 21 29 29 C 1.47154 * 120.98294 * 174.80546 * 13 11 2 30 30 H 1.09008 * 109.47282 * 175.30915 * 1 2 3 31 31 H 1.08998 * 109.48056 * 55.30651 * 1 2 3 32 32 H 1.09009 * 109.46975 * 295.30269 * 1 2 3 33 33 H 1.07997 * 120.02464 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.96667 * 180.23013 * 7 6 5 35 35 H 1.07999 * 119.93624 * 179.75160 * 8 7 6 36 36 H 1.08010 * 119.97257 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.03045 * 179.97438 * 10 9 8 38 38 H 1.08996 * 109.68290 * 350.23918 * 14 13 11 39 39 H 1.08997 * 109.68133 * 110.79050 * 14 13 11 40 40 H 1.09001 * 109.51619 * 67.61992 * 15 14 13 41 41 H 1.09004 * 109.51591 * 187.77680 * 15 14 13 42 42 H 1.08999 * 109.47281 * 59.99609 * 19 17 16 43 43 H 1.08996 * 109.47292 * 179.97438 * 19 17 16 44 44 H 0.97005 * 120.00319 * 0.02562 * 20 19 17 45 45 H 0.96999 * 119.99889 * 179.97438 * 24 23 21 46 46 H 1.09002 * 109.68039 * 249.20612 * 29 13 11 47 47 H 1.08997 * 109.68091 * 9.75827 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.1104 0.0620 2.3046 6 6 1.6620 1.3747 2.3268 7 6 1.7640 2.1187 3.4864 8 6 2.3221 1.5594 4.6211 9 6 2.7749 0.2533 4.5999 10 6 2.6703 -0.4967 3.4444 11 6 2.0322 -0.7104 -1.2305 12 8 2.4784 -1.8346 -1.1421 13 7 1.9856 -0.0963 -2.4294 14 6 1.3519 1.2232 -2.5805 15 6 0.3624 1.1532 -3.7492 16 8 1.0308 0.6343 -4.9014 17 6 1.5186 -0.7002 -4.7436 18 1 0.6924 -1.3614 -4.4825 19 6 2.1549 -1.1700 -6.0533 20 7 1.1527 -1.1402 -7.1213 21 6 1.4940 -1.5215 -8.3915 22 1 2.5020 -1.8446 -8.6058 23 6 0.5442 -1.4938 -9.4034 24 7 -0.6844 -1.1005 -9.1421 25 14 1.0097 -2.0146 -11.1358 26 1 0.7745 -3.4722 -11.2945 27 1 0.1799 -1.2696 -12.1166 28 1 2.4448 -1.7160 -11.3737 29 6 2.5724 -0.7227 -3.6247 30 1 -0.3634 -1.0243 -0.0840 31 1 -0.3635 0.5849 -0.8449 32 1 -0.3633 0.4393 0.9292 33 1 1.2301 1.8133 1.4394 34 1 1.4117 3.1394 3.5052 35 1 2.4046 2.1440 5.5254 36 1 3.2108 -0.1812 5.4874 37 1 3.0245 -1.5168 3.4282 38 1 0.8206 1.4823 -1.6647 39 1 2.1135 1.9746 -2.7887 40 1 -0.4681 0.4987 -3.4845 41 1 -0.0155 2.1523 -3.9667 42 1 2.9822 -0.5094 -6.3128 43 1 2.5270 -2.1873 -5.9321 44 1 0.2472 -0.8503 -6.9288 45 1 -1.3480 -1.0807 -9.8493 46 1 3.4548 -0.1638 -3.9363 47 1 2.8498 -1.7527 -3.4006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280667037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:28 Heat of formation + Delta-G solvation = -59.074368 kcal Electronic energy + Delta-G solvation = -28675.553645 eV Core-core repulsion = 24631.964165 eV Total energy + Delta-G solvation = -4043.589480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15631 -40.07096 -38.52241 -37.49800 -35.25160 -34.44751 -32.88844 -31.99168 -31.17486 -30.21738 -29.94039 -28.28154 -26.02803 -24.68532 -23.57859 -23.23466 -22.71270 -21.94306 -20.89832 -19.46513 -18.85051 -17.53288 -17.02757 -16.89028 -16.37286 -16.17914 -16.04349 -15.55004 -15.26156 -15.15958 -14.83281 -14.52708 -14.44584 -14.06412 -13.86261 -13.69671 -13.36519 -13.16729 -12.93515 -12.82666 -12.70789 -12.44152 -12.30237 -12.04932 -11.94793 -11.62848 -11.46998 -11.19625 -11.06346 -10.91554 -10.78985 -10.50754 -10.10959 -9.94719 -9.89481 -9.68158 -9.39647 -8.86548 -8.66335 -8.57820 -6.89201 -5.72849 -3.01553 0.93667 1.05247 2.13912 2.29559 3.10159 3.40191 3.46143 3.50966 3.52840 3.86289 3.94605 4.23220 4.43328 4.46235 4.49926 4.54674 4.65781 4.66819 4.74050 4.91052 4.97397 4.99483 5.02845 5.13965 5.15094 5.23732 5.26626 5.37565 5.58160 5.59228 5.59822 5.61402 5.67647 5.81539 5.90220 5.91286 6.00674 6.14480 6.16520 6.26178 6.36770 6.54316 6.67415 6.95651 7.08922 7.39947 7.72132 7.85166 8.45300 9.57124 10.13987 10.50004 11.49913 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036578 B = 0.002013 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.313667 B =13907.337820 C =14285.441186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 H 0.097 0.903 4 O -0.285 6.285 5 C 0.131 3.869 6 C -0.213 4.213 7 C -0.079 4.079 8 C -0.161 4.161 9 C -0.080 4.080 10 C -0.150 4.150 11 C 0.521 3.479 12 O -0.514 6.514 13 N -0.609 5.609 14 C 0.062 3.938 15 C 0.046 3.954 16 O -0.354 6.354 17 C 0.074 3.926 18 H 0.065 0.935 19 C 0.163 3.837 20 N -0.726 5.726 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.087 3.913 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.106 0.894 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.388 0.612 45 H 0.254 0.746 46 H 0.081 0.919 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.426 9.219 28.448 30.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.010 3.990 3 H 0.114 0.886 4 O -0.197 6.197 5 C 0.085 3.915 6 C -0.232 4.232 7 C -0.098 4.098 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.168 4.168 11 C 0.307 3.693 12 O -0.388 6.388 13 N -0.345 5.345 14 C -0.061 4.061 15 C -0.032 4.032 16 O -0.272 6.272 17 C 0.015 3.985 18 H 0.083 0.917 19 C 0.035 3.965 20 N -0.370 5.370 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.036 4.036 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.222 0.778 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.839 8.436 28.145 29.631 hybrid contribution -0.275 0.055 -0.707 0.760 sum 3.565 8.490 27.438 28.942 Atomic orbital electron populations 1.22458 0.92327 1.05000 1.04083 1.22187 0.96036 0.96779 0.84048 0.88581 1.86223 1.80849 1.36974 1.15672 1.19115 0.95300 0.90357 0.86687 1.21312 1.07291 0.94311 1.00253 1.20965 0.97099 0.99459 0.92230 1.21088 1.02105 0.95899 0.98786 1.20998 0.97708 0.93993 0.97093 1.20509 1.03533 1.01567 0.91214 1.20006 0.79093 0.86461 0.83697 1.90746 1.44948 1.17867 1.85203 1.48041 1.58315 1.20155 1.08018 1.22736 0.97789 0.84755 1.00826 1.22911 0.93559 1.00756 0.85982 1.88182 1.74674 1.29490 1.34858 1.22897 0.95497 0.84197 0.95915 0.91731 1.20628 0.92917 0.97398 0.85575 1.42203 1.09833 1.80049 1.04927 1.19229 0.95785 1.36343 0.85695 0.91130 1.24744 0.95776 1.02307 0.98173 1.69675 1.02446 1.53654 1.32258 0.86173 0.77376 0.77977 0.84553 1.21752 1.21789 1.20759 1.22494 0.96704 1.00769 0.83596 0.90266 0.89772 0.90282 0.85320 0.85690 0.85880 0.85275 0.84981 0.89047 0.89928 0.92692 0.87554 0.95333 0.94615 0.77829 0.93574 0.90048 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.80 37.16 0.33 -1.09 16 2 C 0.07 0.69 1.79 -27.89 -0.05 0.64 16 3 H 0.10 0.73 5.55 -51.93 -0.29 0.44 16 4 O -0.28 -3.47 9.38 -38.84 -0.36 -3.83 16 5 C 0.13 1.33 6.58 -39.21 -0.26 1.07 16 6 C -0.21 -1.71 8.22 -39.43 -0.32 -2.03 16 7 C -0.08 -0.55 10.04 -39.60 -0.40 -0.94 16 8 C -0.16 -1.08 10.04 -39.57 -0.40 -1.48 16 9 C -0.08 -0.58 10.04 -39.61 -0.40 -0.98 16 10 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 11 C 0.52 6.97 7.01 -10.98 -0.08 6.89 16 12 O -0.51 -9.01 16.04 -13.84 -0.22 -9.24 16 13 N -0.61 -7.45 3.01 -172.02 -0.52 -7.96 16 14 C 0.06 0.56 6.02 -3.53 -0.02 0.54 16 15 C 0.05 0.52 6.98 37.31 0.26 0.78 16 16 O -0.35 -5.94 10.13 -35.23 -0.36 -6.29 16 17 C 0.07 1.23 2.88 -26.36 -0.08 1.16 16 18 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 19 C 0.16 3.32 5.96 -4.04 -0.02 3.30 16 20 N -0.73 -18.85 5.49 -59.91 -0.33 -19.18 16 21 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 25 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 C 0.09 1.22 5.97 -3.31 -0.02 1.20 16 30 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.08 0.51 5.96 -51.93 -0.31 0.20 16 32 H 0.08 0.51 6.99 -51.92 -0.36 0.15 16 33 H 0.13 0.79 5.50 -52.49 -0.29 0.50 16 34 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.09 0.54 4.27 -51.93 -0.22 0.32 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.39 10.69 7.54 -40.82 -0.31 10.38 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.10 1.54 7.06 -51.93 -0.37 1.18 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -35.83 380.20 -9.22 -45.05 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.77 Total: 6.12 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.10 Total: -0.19 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.12 Total: -55.00 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.94 Total: -19.36 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.83 -9.22 -45.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280667037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.021 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds