Wall clock time and date at job start Tue Mar 31 2020 18:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46747 * 2 1 4 4 O 1.42892 * 109.47530 * 120.00371 * 2 1 3 5 5 C 1.35904 * 116.99710 * 275.10802 * 4 2 1 6 6 C 1.38733 * 120.05629 * 5.12737 * 5 4 2 7 7 C 1.38150 * 119.94080 * 179.74446 * 6 5 4 8 8 C 1.38268 * 120.05385 * 0.50353 * 7 6 5 9 9 C 1.38252 * 120.11407 * 359.76895 * 8 7 6 10 10 C 1.38146 * 120.05980 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.46744 * 240.00286 * 2 1 3 12 12 O 1.21279 * 120.00235 * 255.72670 * 11 2 1 13 13 N 1.34777 * 120.00100 * 75.73555 * 11 2 1 14 14 C 1.47153 * 120.98186 * 355.08176 * 13 11 2 15 15 C 1.53292 * 108.38523 * 230.51756 * 14 13 11 16 16 O 1.42964 * 109.22215 * 307.69738 * 15 14 13 17 17 C 1.42957 * 114.16705 * 62.58588 * 16 15 14 18 18 H 1.08995 * 109.51790 * 57.34080 * 17 16 15 19 19 C 1.53001 * 109.51288 * 177.44607 * 17 16 15 20 20 N 1.46494 * 109.46895 * 299.99552 * 19 17 16 21 21 C 1.36941 * 120.00181 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99846 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00213 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00058 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99934 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47127 * 90.00169 * 25 23 21 27 27 H 1.48506 * 109.47155 * 210.00045 * 25 23 21 28 28 H 1.48502 * 109.47077 * 330.00110 * 25 23 21 29 29 C 1.47154 * 120.98294 * 174.80546 * 13 11 2 30 30 H 1.09008 * 109.47282 * 175.30915 * 1 2 3 31 31 H 1.08998 * 109.48056 * 55.30651 * 1 2 3 32 32 H 1.09009 * 109.46975 * 295.30269 * 1 2 3 33 33 H 1.07997 * 120.02464 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.96667 * 180.23013 * 7 6 5 35 35 H 1.07999 * 119.93624 * 179.75160 * 8 7 6 36 36 H 1.08010 * 119.97257 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.03045 * 179.97438 * 10 9 8 38 38 H 1.08996 * 109.68290 * 350.23918 * 14 13 11 39 39 H 1.08997 * 109.68133 * 110.79050 * 14 13 11 40 40 H 1.09001 * 109.51619 * 67.61992 * 15 14 13 41 41 H 1.09004 * 109.51591 * 187.77680 * 15 14 13 42 42 H 1.08999 * 109.47281 * 59.99609 * 19 17 16 43 43 H 1.08996 * 109.47292 * 179.97438 * 19 17 16 44 44 H 0.97005 * 120.00319 * 0.02562 * 20 19 17 45 45 H 0.96999 * 119.99889 * 179.97438 * 24 23 21 46 46 H 1.09002 * 109.68039 * 249.20612 * 29 13 11 47 47 H 1.08997 * 109.68091 * 9.75827 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.1104 0.0620 2.3046 6 6 1.6620 1.3747 2.3268 7 6 1.7640 2.1187 3.4864 8 6 2.3221 1.5594 4.6211 9 6 2.7749 0.2533 4.5999 10 6 2.6703 -0.4967 3.4444 11 6 2.0322 -0.7104 -1.2305 12 8 2.4784 -1.8346 -1.1421 13 7 1.9856 -0.0963 -2.4294 14 6 1.3519 1.2232 -2.5805 15 6 0.3624 1.1532 -3.7492 16 8 1.0308 0.6343 -4.9014 17 6 1.5186 -0.7002 -4.7436 18 1 0.6924 -1.3614 -4.4825 19 6 2.1549 -1.1700 -6.0533 20 7 1.1527 -1.1402 -7.1213 21 6 1.4940 -1.5215 -8.3915 22 1 2.5020 -1.8446 -8.6058 23 6 0.5442 -1.4938 -9.4034 24 7 -0.6844 -1.1005 -9.1421 25 14 1.0097 -2.0146 -11.1358 26 1 0.7745 -3.4722 -11.2945 27 1 0.1799 -1.2696 -12.1166 28 1 2.4448 -1.7160 -11.3737 29 6 2.5724 -0.7227 -3.6247 30 1 -0.3634 -1.0243 -0.0840 31 1 -0.3635 0.5849 -0.8449 32 1 -0.3633 0.4393 0.9292 33 1 1.2301 1.8133 1.4394 34 1 1.4117 3.1394 3.5052 35 1 2.4046 2.1440 5.5254 36 1 3.2108 -0.1812 5.4874 37 1 3.0245 -1.5168 3.4282 38 1 0.8206 1.4823 -1.6647 39 1 2.1135 1.9746 -2.7887 40 1 -0.4681 0.4987 -3.4845 41 1 -0.0155 2.1523 -3.9667 42 1 2.9822 -0.5094 -6.3128 43 1 2.5270 -2.1873 -5.9321 44 1 0.2472 -0.8503 -6.9288 45 1 -1.3480 -1.0807 -9.8493 46 1 3.4548 -0.1638 -3.9363 47 1 2.8498 -1.7527 -3.4006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280667037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:28 Heat of formation + Delta-G solvation = -83.064725 kcal Electronic energy + Delta-G solvation = -28676.593945 eV Core-core repulsion = 24631.964165 eV Total energy + Delta-G solvation = -4044.629780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.02729 -40.92420 -39.57879 -38.25354 -36.73554 -35.90868 -34.09764 -33.26274 -31.91183 -31.56610 -30.59457 -29.44681 -27.49497 -25.63981 -24.93983 -24.14274 -23.58803 -22.93906 -22.19716 -20.38609 -19.55677 -19.24421 -18.29980 -17.85931 -17.43532 -16.99443 -16.86534 -16.72320 -16.25472 -16.18903 -16.03438 -15.75321 -15.43409 -15.10694 -15.02086 -14.58143 -14.48641 -14.36018 -14.21120 -13.96829 -13.59607 -13.51525 -13.29277 -13.05615 -12.85067 -12.75499 -12.59190 -12.44392 -12.28141 -12.13660 -12.05717 -11.88720 -11.78532 -11.60782 -11.21851 -10.96173 -10.89838 -9.94445 -9.73350 -9.20680 -9.00919 -7.94192 -5.23622 0.39372 0.46800 1.23231 1.32514 1.47838 1.50096 1.58551 2.31837 2.56340 2.73556 2.84523 3.10950 3.39450 3.49310 3.56750 3.74566 3.84559 3.89828 3.92771 3.97817 3.99423 4.11841 4.26651 4.29180 4.35062 4.39812 4.44671 4.51137 4.55961 4.56957 4.63799 4.72130 4.74848 4.83376 4.92844 5.05574 5.07600 5.09643 5.14132 5.34797 5.48337 5.48517 5.61513 5.82507 6.07428 6.21746 6.27820 6.38169 6.84701 7.33643 8.07408 8.32426 9.29396 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036578 B = 0.002013 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.313667 B =13907.337820 C =14285.441186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.074 3.926 3 H 0.128 0.872 4 O -0.317 6.317 5 C 0.104 3.896 6 C -0.215 4.215 7 C -0.081 4.081 8 C -0.162 4.162 9 C -0.084 4.084 10 C -0.174 4.174 11 C 0.516 3.484 12 O -0.567 6.567 13 N -0.607 5.607 14 C 0.064 3.936 15 C 0.036 3.964 16 O -0.385 6.385 17 C 0.089 3.911 18 H 0.049 0.951 19 C 0.159 3.841 20 N -0.739 5.739 21 C -0.248 4.248 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.968 5.968 25 Si 0.977 3.023 26 H -0.287 1.287 27 H -0.294 1.294 28 H -0.269 1.269 29 C 0.095 3.905 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.133 0.867 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.093 0.907 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 11.745 29.949 32.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.015 3.985 3 H 0.145 0.855 4 O -0.231 6.231 5 C 0.059 3.941 6 C -0.233 4.233 7 C -0.099 4.099 8 C -0.180 4.180 9 C -0.101 4.101 10 C -0.193 4.193 11 C 0.304 3.696 12 O -0.445 6.445 13 N -0.341 5.341 14 C -0.057 4.057 15 C -0.041 4.041 16 O -0.303 6.303 17 C 0.030 3.970 18 H 0.067 0.933 19 C 0.032 3.968 20 N -0.382 5.382 21 C -0.379 4.379 22 H 0.095 0.905 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.806 3.194 26 H -0.214 1.214 27 H -0.220 1.220 28 H -0.194 1.194 29 C -0.028 4.028 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.151 0.849 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.111 0.889 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.062 10.993 29.677 31.907 hybrid contribution -0.319 -0.681 -1.053 1.294 sum 3.744 10.311 28.625 30.655 Atomic orbital electron populations 1.22472 0.90627 1.04293 1.05977 1.22278 0.97091 0.97219 0.81962 0.85518 1.86177 1.81637 1.38538 1.16702 1.19374 0.96964 0.91503 0.86220 1.21556 1.06857 0.93325 1.01588 1.21365 0.96289 1.00595 0.91673 1.21476 1.00970 0.95665 0.99842 1.21278 0.97456 0.94404 0.96999 1.20692 1.04625 1.01749 0.92241 1.20741 0.78061 0.85959 0.84825 1.90717 1.47414 1.20310 1.86051 1.48114 1.57854 1.21059 1.07087 1.22968 0.97909 0.83271 1.01555 1.23264 0.93806 1.01720 0.85268 1.88117 1.75388 1.28872 1.37953 1.22513 0.95411 0.84430 0.94627 0.93346 1.20771 0.92116 0.97833 0.86075 1.42382 1.10338 1.79917 1.05557 1.19665 0.96045 1.35340 0.86894 0.90453 1.25613 0.95838 1.03155 1.02281 1.69837 1.03455 1.55372 1.33235 0.85090 0.77545 0.77344 0.79451 1.21413 1.22045 1.19354 1.22227 0.96224 1.00665 0.83696 0.92444 0.87584 0.88440 0.83291 0.82918 0.83422 0.83355 0.85991 0.85236 0.88150 0.92794 0.84929 0.94993 0.94156 0.79214 0.94001 0.88861 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.80 71.98 0.63 -1.75 16 2 C 0.07 1.36 1.79 29.85 0.05 1.41 16 3 H 0.13 1.48 5.55 -2.39 -0.01 1.47 16 4 O -0.32 -7.73 9.38 -73.92 -0.69 -8.42 16 5 C 0.10 2.04 6.58 22.51 0.15 2.19 16 6 C -0.21 -2.86 8.22 22.37 0.18 -2.67 16 7 C -0.08 -0.84 10.04 22.26 0.22 -0.62 16 8 C -0.16 -1.71 10.04 22.28 0.22 -1.48 16 9 C -0.08 -1.10 10.04 22.25 0.22 -0.87 16 10 C -0.17 -3.25 9.99 22.37 0.22 -3.02 16 11 C 0.52 13.62 7.01 87.66 0.61 14.23 16 12 O -0.57 -20.72 16.04 15.52 0.25 -20.47 16 13 N -0.61 -14.11 3.01 -816.53 -2.46 -16.57 16 14 C 0.06 0.97 6.02 86.35 0.52 1.48 16 15 C 0.04 0.75 6.98 72.08 0.50 1.25 16 16 O -0.38 -12.68 10.13 -148.98 -1.51 -14.19 16 17 C 0.09 3.02 2.88 30.84 0.09 3.11 16 18 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 19 C 0.16 6.58 5.96 86.38 0.51 7.09 16 20 N -0.74 -39.14 5.49 -343.47 -1.89 -41.03 16 21 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 22 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 23 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 24 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 25 Si 0.98 46.90 29.55 68.60 2.03 48.92 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 C 0.10 2.67 5.97 86.50 0.52 3.19 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.11 0.91 5.96 -2.39 -0.01 0.90 16 32 H 0.10 0.98 6.99 -2.38 -0.02 0.97 16 33 H 0.15 1.21 5.50 -2.91 -0.02 1.20 16 34 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.13 0.95 4.27 -2.39 -0.01 0.94 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.38 21.34 7.54 -92.70 -0.70 20.64 16 45 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.09 2.79 7.06 -2.39 -0.02 2.77 16 Total: -1.00 -80.95 380.20 2.28 -78.67 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.29 Total: 27.13 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.98 Total: 6.11 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -4.07 Total: -117.76 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.95 Total: -43.08 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -80.95 2.28 -78.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280667037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.393 kcal (2) G-P(sol) polarization free energy of solvation -80.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds