Wall clock time and date at job start Tue Mar 31 2020 18:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47064 * 2 1 4 4 O 1.42901 * 109.47125 * 120.00187 * 2 1 3 5 5 C 1.35905 * 116.99818 * 275.03570 * 4 2 1 6 6 C 1.38732 * 120.05430 * 5.43515 * 5 4 2 7 7 C 1.38139 * 119.94384 * 179.97438 * 6 5 4 8 8 C 1.38265 * 120.05787 * 0.02562 * 7 6 5 9 9 C 1.38267 * 120.10701 * 0.26953 * 8 7 6 10 10 C 1.38149 * 120.05709 * 359.45600 * 9 8 7 11 11 C 1.50707 * 109.46885 * 239.99952 * 2 1 3 12 12 O 1.21277 * 119.99659 * 244.99687 * 11 2 1 13 13 N 1.34775 * 120.00194 * 65.00172 * 11 2 1 14 14 C 1.47155 * 120.97896 * 359.97438 * 13 11 2 15 15 C 1.53288 * 108.38542 * 129.44356 * 14 13 11 16 16 O 1.42963 * 109.22551 * 52.29707 * 15 14 13 17 17 C 1.42967 * 114.16967 * 297.42309 * 16 15 14 18 18 H 1.08998 * 109.50984 * 302.65899 * 17 16 15 19 19 C 1.52996 * 109.51312 * 182.50036 * 17 16 15 20 20 N 1.46501 * 109.46942 * 65.00312 * 19 17 16 21 21 C 1.36935 * 119.99737 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99971 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00092 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99562 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00204 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47079 * 90.00253 * 25 23 21 27 27 H 1.48502 * 109.47244 * 210.00422 * 25 23 21 28 28 H 1.48504 * 109.47287 * 330.00668 * 25 23 21 29 29 C 1.47145 * 120.98039 * 179.71598 * 13 11 2 30 30 H 1.09007 * 109.46734 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47113 * 300.00010 * 1 2 3 32 32 H 1.08993 * 109.47301 * 60.00207 * 1 2 3 33 33 H 1.08004 * 120.02726 * 359.95599 * 6 5 4 34 34 H 1.08005 * 119.97167 * 180.02562 * 7 6 5 35 35 H 1.07993 * 119.94908 * 180.02562 * 8 7 6 36 36 H 1.08007 * 119.97000 * 179.70344 * 9 8 7 37 37 H 1.08001 * 120.02979 * 180.27241 * 10 9 8 38 38 H 1.09009 * 109.67714 * 249.16372 * 14 13 11 39 39 H 1.09003 * 109.68170 * 9.71278 * 14 13 11 40 40 H 1.09001 * 109.51282 * 172.22199 * 15 14 13 41 41 H 1.09000 * 109.51122 * 292.32373 * 15 14 13 42 42 H 1.09007 * 109.46665 * 184.99574 * 19 17 16 43 43 H 1.08995 * 109.47049 * 304.99871 * 19 17 16 44 44 H 0.96993 * 120.00371 * 359.97438 * 20 19 17 45 45 H 0.97007 * 119.99795 * 179.97438 * 24 23 21 46 46 H 1.08993 * 109.68828 * 350.28109 * 29 13 11 47 47 H 1.09002 * 109.68493 * 110.83415 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1118 0.0624 2.3043 6 6 1.6589 1.3735 2.3280 7 6 1.7668 2.1194 3.4857 8 6 2.3259 1.5606 4.6201 9 6 2.7836 0.2561 4.5972 10 6 2.6729 -0.4959 3.4436 11 6 2.0323 -0.7105 -1.2305 12 8 2.6530 -1.7467 -1.1215 13 7 1.7919 -0.1943 -2.4521 14 6 1.0408 1.0614 -2.6093 15 6 1.8446 1.9945 -3.5220 16 8 2.1808 1.3007 -4.7259 17 6 3.0170 0.1580 -4.5289 18 1 3.9341 0.4607 -4.0236 19 6 3.3602 -0.4639 -5.8840 20 7 4.1686 0.4777 -6.6627 21 6 4.5976 0.1368 -7.9176 22 1 4.3397 -0.8260 -8.3335 23 6 5.3632 1.0291 -8.6556 24 7 5.6771 2.2026 -8.1489 25 14 5.9490 0.5639 -10.3672 26 1 4.9380 0.9880 -11.3688 27 1 7.2401 1.2412 -10.6497 28 1 6.1347 -0.9075 -10.4440 29 6 2.2776 -0.8666 -3.6675 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.2227 1.8107 1.4420 34 1 1.4140 3.1401 3.5048 35 1 2.4090 2.1452 5.5243 36 1 3.2243 -0.1767 5.4832 37 1 3.0265 -1.5163 3.4275 38 1 0.0699 0.8543 -3.0595 39 1 0.9018 1.5305 -1.6353 40 1 1.2457 2.8727 -3.7630 41 1 2.7570 2.3047 -3.0127 42 1 3.9231 -1.3844 -5.7292 43 1 2.4405 -0.6868 -6.4248 44 1 4.4000 1.3425 -6.2893 45 1 6.2124 2.8260 -8.6645 46 1 2.9573 -1.6736 -3.3940 47 1 1.4332 -1.2707 -4.2259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280667038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:31 Heat of formation + Delta-G solvation = -58.705584 kcal Electronic energy + Delta-G solvation = -28711.931421 eV Core-core repulsion = 24668.357933 eV Total energy + Delta-G solvation = -4043.573488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15738 -40.07222 -38.52891 -37.48031 -35.29401 -34.48025 -32.88595 -32.00162 -31.15447 -30.22486 -29.93094 -28.25582 -25.98961 -24.82191 -23.56642 -23.20452 -22.70351 -21.90761 -20.85538 -19.54809 -18.86695 -17.47150 -17.06245 -16.88927 -16.36330 -16.16419 -16.11545 -15.52085 -15.35670 -15.00280 -14.80403 -14.54300 -14.34921 -14.14367 -13.82758 -13.58863 -13.48197 -13.18850 -12.94099 -12.82018 -12.74068 -12.40845 -12.26516 -12.09067 -11.92184 -11.68450 -11.45153 -11.17685 -11.07214 -10.89990 -10.80410 -10.50066 -10.10560 -9.97253 -9.88234 -9.68637 -9.36921 -8.87278 -8.66601 -8.56255 -6.90153 -5.73426 -3.02220 0.96397 1.07932 2.16940 2.29234 3.09019 3.42993 3.45997 3.50741 3.52633 3.85143 3.94789 4.23255 4.42365 4.48009 4.51797 4.53889 4.64113 4.70465 4.76339 4.88901 4.97786 5.01471 5.03602 5.13524 5.16509 5.23075 5.28241 5.35800 5.58307 5.59309 5.59672 5.61057 5.64010 5.81204 5.89544 5.93431 6.03300 6.16266 6.17265 6.25219 6.39000 6.53757 6.66672 6.96757 7.09433 7.39129 7.71676 7.85760 8.44601 9.56366 10.12934 10.48721 11.49393 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.002112 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.624039 B =13252.543953 C =13369.376385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 H 0.099 0.901 4 O -0.284 6.284 5 C 0.131 3.869 6 C -0.213 4.213 7 C -0.079 4.079 8 C -0.160 4.160 9 C -0.080 4.080 10 C -0.149 4.149 11 C 0.521 3.479 12 O -0.514 6.514 13 N -0.608 5.608 14 C 0.065 3.935 15 C 0.044 3.956 16 O -0.356 6.356 17 C 0.073 3.927 18 H 0.064 0.936 19 C 0.164 3.836 20 N -0.726 5.726 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.087 3.913 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.030 0.970 44 H 0.387 0.613 45 H 0.255 0.745 46 H 0.103 0.897 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 0.440 25.812 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.009 3.991 3 H 0.116 0.884 4 O -0.197 6.197 5 C 0.086 3.914 6 C -0.232 4.232 7 C -0.097 4.097 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.168 4.168 11 C 0.307 3.693 12 O -0.388 6.388 13 N -0.344 5.344 14 C -0.058 4.058 15 C -0.034 4.034 16 O -0.274 6.274 17 C 0.014 3.986 18 H 0.082 0.918 19 C 0.035 3.965 20 N -0.371 5.371 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.035 4.035 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.221 0.779 45 H 0.064 0.936 46 H 0.122 0.878 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.087 -0.391 25.506 28.670 hybrid contribution 0.340 0.389 -0.614 0.802 sum -12.747 -0.002 24.892 27.966 Atomic orbital electron populations 1.22509 0.92436 1.04875 1.04241 1.22154 0.95893 0.96936 0.84138 0.88397 1.86219 1.80920 1.36868 1.15657 1.19103 0.95303 0.90384 0.86652 1.21307 1.07264 0.94332 1.00267 1.20962 0.97127 0.99412 0.92240 1.21091 1.02065 0.95918 0.98784 1.21003 0.97653 0.94004 0.97127 1.20503 1.03472 1.01562 0.91255 1.20005 0.80092 0.85527 0.83678 1.90749 1.39341 1.23004 1.85708 1.48023 1.55718 1.25065 1.05627 1.22748 0.96457 0.85154 1.01481 1.22935 0.98830 0.94609 0.87004 1.88177 1.69013 1.41804 1.28365 1.22754 0.92224 0.85764 0.97827 0.91776 1.20617 0.94986 0.92943 0.87919 1.42222 1.61367 1.17419 1.16083 1.19226 1.25951 1.00128 0.91736 0.91102 1.24751 1.01102 0.96408 0.98763 1.69675 1.42933 1.07849 1.37613 0.86167 0.77903 0.77509 0.84467 1.21724 1.21802 1.20742 1.22319 1.00420 0.96605 0.84182 0.90443 0.90422 0.89586 0.85348 0.85683 0.85871 0.85271 0.84984 0.89729 0.89135 0.87555 0.92726 0.94559 0.95190 0.77919 0.93555 0.87825 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.77 37.16 0.33 -0.98 16 2 C 0.07 0.69 1.81 -27.88 -0.05 0.64 16 3 H 0.10 0.79 5.57 -51.93 -0.29 0.50 16 4 O -0.28 -3.51 9.34 -39.30 -0.37 -3.88 16 5 C 0.13 1.37 6.60 -39.22 -0.26 1.12 16 6 C -0.21 -1.78 8.24 -39.43 -0.33 -2.10 16 7 C -0.08 -0.58 10.04 -39.61 -0.40 -0.97 16 8 C -0.16 -1.14 10.04 -39.56 -0.40 -1.54 16 9 C -0.08 -0.61 10.04 -39.60 -0.40 -1.01 16 10 C -0.15 -1.44 9.99 -39.43 -0.39 -1.83 16 11 C 0.52 6.97 7.13 -10.98 -0.08 6.89 16 12 O -0.51 -9.06 15.98 -14.30 -0.23 -9.29 16 13 N -0.61 -7.39 3.02 -172.51 -0.52 -7.91 16 14 C 0.06 0.57 5.10 -3.54 -0.02 0.56 16 15 C 0.04 0.50 6.98 37.31 0.26 0.76 16 16 O -0.36 -5.93 10.33 -35.23 -0.36 -6.29 16 17 C 0.07 1.23 2.80 -26.77 -0.07 1.15 16 18 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 19 C 0.16 3.33 5.93 -4.04 -0.02 3.31 16 20 N -0.73 -18.89 5.55 -59.91 -0.33 -19.22 16 21 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 25 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 C 0.09 1.22 5.90 -3.73 -0.02 1.20 16 30 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.08 0.46 6.91 -51.93 -0.36 0.10 16 32 H 0.09 0.46 5.45 -51.93 -0.28 0.18 16 33 H 0.13 0.82 5.43 -52.48 -0.29 0.54 16 34 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.08 0.66 8.11 -51.92 -0.42 0.24 16 39 H 0.09 0.52 4.90 -51.93 -0.25 0.27 16 40 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.39 10.68 7.67 -40.82 -0.31 10.37 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 47 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -35.95 379.52 -9.26 -45.21 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.77 Total: 6.21 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.10 Total: -0.29 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.13 Total: -55.05 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.96 Total: -19.45 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.95 -9.26 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280667038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.497 kcal (2) G-P(sol) polarization free energy of solvation -35.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds