Wall clock time and date at job start Tue Mar 31 2020 18:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47064 * 2 1 4 4 O 1.42901 * 109.47125 * 120.00187 * 2 1 3 5 5 C 1.35905 * 116.99818 * 275.03570 * 4 2 1 6 6 C 1.38732 * 120.05430 * 5.43515 * 5 4 2 7 7 C 1.38139 * 119.94384 * 179.97438 * 6 5 4 8 8 C 1.38265 * 120.05787 * 0.02562 * 7 6 5 9 9 C 1.38267 * 120.10701 * 0.26953 * 8 7 6 10 10 C 1.38149 * 120.05709 * 359.45600 * 9 8 7 11 11 C 1.50707 * 109.46885 * 239.99952 * 2 1 3 12 12 O 1.21277 * 119.99659 * 244.99687 * 11 2 1 13 13 N 1.34775 * 120.00194 * 65.00172 * 11 2 1 14 14 C 1.47155 * 120.97896 * 359.97438 * 13 11 2 15 15 C 1.53288 * 108.38542 * 129.44356 * 14 13 11 16 16 O 1.42963 * 109.22551 * 52.29707 * 15 14 13 17 17 C 1.42967 * 114.16967 * 297.42309 * 16 15 14 18 18 H 1.08998 * 109.50984 * 302.65899 * 17 16 15 19 19 C 1.52996 * 109.51312 * 182.50036 * 17 16 15 20 20 N 1.46501 * 109.46942 * 65.00312 * 19 17 16 21 21 C 1.36935 * 119.99737 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99971 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00092 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99562 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00204 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47079 * 90.00253 * 25 23 21 27 27 H 1.48502 * 109.47244 * 210.00422 * 25 23 21 28 28 H 1.48504 * 109.47287 * 330.00668 * 25 23 21 29 29 C 1.47145 * 120.98039 * 179.71598 * 13 11 2 30 30 H 1.09007 * 109.46734 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47113 * 300.00010 * 1 2 3 32 32 H 1.08993 * 109.47301 * 60.00207 * 1 2 3 33 33 H 1.08004 * 120.02726 * 359.95599 * 6 5 4 34 34 H 1.08005 * 119.97167 * 180.02562 * 7 6 5 35 35 H 1.07993 * 119.94908 * 180.02562 * 8 7 6 36 36 H 1.08007 * 119.97000 * 179.70344 * 9 8 7 37 37 H 1.08001 * 120.02979 * 180.27241 * 10 9 8 38 38 H 1.09009 * 109.67714 * 249.16372 * 14 13 11 39 39 H 1.09003 * 109.68170 * 9.71278 * 14 13 11 40 40 H 1.09001 * 109.51282 * 172.22199 * 15 14 13 41 41 H 1.09000 * 109.51122 * 292.32373 * 15 14 13 42 42 H 1.09007 * 109.46665 * 184.99574 * 19 17 16 43 43 H 1.08995 * 109.47049 * 304.99871 * 19 17 16 44 44 H 0.96993 * 120.00371 * 359.97438 * 20 19 17 45 45 H 0.97007 * 119.99795 * 179.97438 * 24 23 21 46 46 H 1.08993 * 109.68828 * 350.28109 * 29 13 11 47 47 H 1.09002 * 109.68493 * 110.83415 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1118 0.0624 2.3043 6 6 1.6589 1.3735 2.3280 7 6 1.7668 2.1194 3.4857 8 6 2.3259 1.5606 4.6201 9 6 2.7836 0.2561 4.5972 10 6 2.6729 -0.4959 3.4436 11 6 2.0323 -0.7105 -1.2305 12 8 2.6530 -1.7467 -1.1215 13 7 1.7919 -0.1943 -2.4521 14 6 1.0408 1.0614 -2.6093 15 6 1.8446 1.9945 -3.5220 16 8 2.1808 1.3007 -4.7259 17 6 3.0170 0.1580 -4.5289 18 1 3.9341 0.4607 -4.0236 19 6 3.3602 -0.4639 -5.8840 20 7 4.1686 0.4777 -6.6627 21 6 4.5976 0.1368 -7.9176 22 1 4.3397 -0.8260 -8.3335 23 6 5.3632 1.0291 -8.6556 24 7 5.6771 2.2026 -8.1489 25 14 5.9490 0.5639 -10.3672 26 1 4.9380 0.9880 -11.3688 27 1 7.2401 1.2412 -10.6497 28 1 6.1347 -0.9075 -10.4440 29 6 2.2776 -0.8666 -3.6675 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.2227 1.8107 1.4420 34 1 1.4140 3.1401 3.5048 35 1 2.4090 2.1452 5.5243 36 1 3.2243 -0.1767 5.4832 37 1 3.0265 -1.5163 3.4275 38 1 0.0699 0.8543 -3.0595 39 1 0.9018 1.5305 -1.6353 40 1 1.2457 2.8727 -3.7630 41 1 2.7570 2.3047 -3.0127 42 1 3.9231 -1.3844 -5.7292 43 1 2.4405 -0.6868 -6.4248 44 1 4.4000 1.3425 -6.2893 45 1 6.2124 2.8260 -8.6645 46 1 2.9573 -1.6736 -3.3940 47 1 1.4332 -1.2707 -4.2259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280667038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:30 Heat of formation + Delta-G solvation = -82.960906 kcal Electronic energy + Delta-G solvation = -28712.983211 eV Core-core repulsion = 24668.357933 eV Total energy + Delta-G solvation = -4044.625278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03674 -40.93462 -39.59052 -38.25128 -36.75811 -35.95022 -34.11653 -33.24904 -31.92937 -31.57642 -30.59533 -29.41997 -27.45095 -25.72620 -24.99745 -24.07094 -23.59539 -22.97774 -22.11301 -20.47704 -19.57077 -19.24787 -18.27047 -17.89663 -17.40895 -17.04954 -16.88050 -16.76405 -16.28522 -16.18119 -15.93600 -15.66833 -15.47191 -15.09594 -15.03547 -14.56146 -14.49204 -14.37823 -14.17456 -14.00933 -13.61607 -13.54384 -13.21102 -13.01967 -12.81608 -12.77742 -12.65986 -12.45652 -12.26986 -12.13076 -12.06720 -11.88054 -11.78774 -11.61835 -11.23222 -10.97114 -10.88039 -9.95112 -9.73957 -9.21046 -9.02211 -7.95021 -5.24603 0.38713 0.46271 1.26413 1.31928 1.47556 1.49946 1.58331 2.30451 2.55931 2.72337 2.84052 3.11752 3.38907 3.51166 3.55059 3.75721 3.84809 3.88518 3.92356 3.98078 3.99776 4.11812 4.27560 4.28614 4.37229 4.38001 4.45158 4.51041 4.59916 4.60599 4.62216 4.72055 4.74767 4.83261 4.92774 5.05926 5.06760 5.09292 5.13932 5.34034 5.47728 5.47941 5.60761 5.81923 6.07439 6.20804 6.26543 6.37947 6.85451 7.32607 8.05956 8.30758 9.28692 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.002112 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.624039 B =13252.543953 C =13369.376385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 H 0.122 0.878 4 O -0.316 6.316 5 C 0.104 3.896 6 C -0.216 4.216 7 C -0.082 4.082 8 C -0.162 4.162 9 C -0.084 4.084 10 C -0.175 4.175 11 C 0.515 3.485 12 O -0.568 6.568 13 N -0.605 5.605 14 C 0.066 3.934 15 C 0.035 3.965 16 O -0.385 6.385 17 C 0.089 3.911 18 H 0.045 0.955 19 C 0.160 3.840 20 N -0.740 5.740 21 C -0.247 4.247 22 H 0.078 0.922 23 C -0.078 4.078 24 N -0.969 5.969 25 Si 0.978 3.022 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.269 1.269 29 C 0.096 3.904 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.050 0.950 42 H 0.042 0.958 43 H 0.034 0.966 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.088 0.912 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.374 1.824 26.933 31.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.012 3.988 3 H 0.139 0.861 4 O -0.230 6.230 5 C 0.060 3.940 6 C -0.234 4.234 7 C -0.100 4.100 8 C -0.180 4.180 9 C -0.102 4.102 10 C -0.193 4.193 11 C 0.303 3.697 12 O -0.446 6.446 13 N -0.340 5.340 14 C -0.055 4.055 15 C -0.042 4.042 16 O -0.304 6.304 17 C 0.030 3.970 18 H 0.063 0.937 19 C 0.033 3.967 20 N -0.383 5.383 21 C -0.379 4.379 22 H 0.096 0.904 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.806 3.194 26 H -0.212 1.212 27 H -0.221 1.221 28 H -0.194 1.194 29 C -0.028 4.028 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.140 0.860 38 H 0.124 0.876 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.063 0.988 26.646 30.625 hybrid contribution 0.911 -0.010 -0.857 1.251 sum -14.152 0.978 25.789 29.433 Atomic orbital electron populations 1.22520 0.89926 1.04633 1.06238 1.22283 0.97568 0.96955 0.81980 0.86057 1.86171 1.81755 1.38395 1.16674 1.19364 0.96894 0.91523 0.86241 1.21559 1.06870 0.93379 1.01583 1.21363 0.96359 1.00540 0.91715 1.21478 1.00982 0.95701 0.99837 1.21286 0.97408 0.94406 0.97057 1.20692 1.04576 1.01764 0.92297 1.20746 0.79069 0.85037 0.84817 1.90719 1.41833 1.25551 1.86521 1.48090 1.55360 1.25861 1.04656 1.23018 0.96144 0.83180 1.03187 1.23290 0.99556 0.95609 0.85789 1.88112 1.68781 1.41899 1.31572 1.22357 0.92202 0.86690 0.95758 0.93653 1.20759 0.94211 0.92393 0.89351 1.42411 1.62090 1.17790 1.16021 1.19665 1.25263 1.00263 0.92690 0.90378 1.25629 1.01916 0.96556 1.02867 1.69838 1.44077 1.08972 1.39119 0.85080 0.76964 0.77730 0.79600 1.21235 1.22146 1.19358 1.22045 1.00399 0.95448 0.84875 0.91908 0.88612 0.87211 0.83295 0.82945 0.83426 0.83339 0.85959 0.87601 0.85240 0.84807 0.93172 0.94060 0.94816 0.79340 0.93984 0.89322 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 8.77 71.98 0.63 -1.39 16 2 C 0.07 1.32 1.81 29.85 0.05 1.38 16 3 H 0.12 1.60 5.57 -2.39 -0.01 1.59 16 4 O -0.32 -7.86 9.34 -73.49 -0.69 -8.55 16 5 C 0.10 2.14 6.60 22.50 0.15 2.29 16 6 C -0.22 -3.08 8.24 22.36 0.18 -2.89 16 7 C -0.08 -0.93 10.04 22.25 0.22 -0.71 16 8 C -0.16 -1.88 10.04 22.28 0.22 -1.66 16 9 C -0.08 -1.18 10.04 22.26 0.22 -0.96 16 10 C -0.17 -3.41 9.99 22.36 0.22 -3.19 16 11 C 0.52 13.61 7.13 87.66 0.62 14.23 16 12 O -0.57 -20.85 15.98 15.97 0.26 -20.60 16 13 N -0.61 -13.95 3.02 -818.08 -2.47 -16.42 16 14 C 0.07 0.96 5.10 86.35 0.44 1.40 16 15 C 0.03 0.71 6.98 72.08 0.50 1.21 16 16 O -0.38 -12.59 10.33 -148.98 -1.54 -14.13 16 17 C 0.09 3.02 2.80 30.57 0.09 3.10 16 18 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 19 C 0.16 6.61 5.93 86.38 0.51 7.12 16 20 N -0.74 -39.27 5.55 -343.45 -1.91 -41.18 16 21 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 22 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 23 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 24 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 25 Si 0.98 46.93 29.55 68.60 2.03 48.95 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 29 C 0.10 2.68 5.90 86.23 0.51 3.19 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.10 0.79 6.91 -2.39 -0.02 0.77 16 32 H 0.11 0.69 5.45 -2.39 -0.01 0.68 16 33 H 0.15 1.34 5.43 -2.91 -0.02 1.33 16 34 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.11 1.20 8.11 -2.38 -0.02 1.18 16 39 H 0.13 0.89 4.90 -2.39 -0.01 0.88 16 40 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.37 21.34 7.67 -92.71 -0.71 20.63 16 45 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 46 H 0.09 2.76 7.08 -2.39 -0.02 2.75 16 47 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -81.43 379.52 2.13 -79.30 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.28 Total: 27.34 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.89 Total: 5.67 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.10 Total: -117.98 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.97 Total: -43.28 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -81.43 2.13 -79.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280667038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.659 kcal (2) G-P(sol) polarization free energy of solvation -81.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds