Wall clock time and date at job start Tue Mar 31 2020 17:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47131 * 2 1 4 4 C 1.53000 * 109.47284 * 239.99905 * 2 1 3 5 5 N 1.46506 * 109.47030 * 185.00331 * 4 2 1 6 6 C 1.34774 * 120.00091 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99931 * 359.97438 * 6 5 4 8 8 C 1.47541 * 120.00429 * 179.97438 * 6 5 4 9 9 C 1.39916 * 120.31195 * 359.97438 * 8 6 5 10 10 C 1.37747 * 120.04343 * 179.74424 * 9 8 6 11 11 C 1.38640 * 120.44259 * 359.96147 * 10 9 8 12 12 C 1.38358 * 120.06378 * 359.97438 * 11 10 9 13 13 C 1.38771 * 120.12973 * 0.08336 * 12 11 10 14 14 O 1.36180 * 119.70064 * 179.87113 * 13 12 11 15 15 C 1.42915 * 115.91752 * 68.38279 * 14 13 12 16 16 C 1.52066 * 110.74489 * 275.57918 * 15 14 13 17 17 C 1.52059 * 112.37593 * 64.76881 * 16 15 14 18 18 O 1.36486 * 120.31260 * 180.02562 * 12 11 10 19 19 N 1.46504 * 109.46970 * 119.99761 * 2 1 3 20 20 C 1.46498 * 120.00052 * 60.00177 * 19 2 1 21 21 C 1.36936 * 119.99645 * 240.00192 * 19 2 1 22 22 H 1.07993 * 120.00750 * 21.91646 * 21 19 2 23 23 C 1.38816 * 119.99602 * 201.91336 * 21 19 2 24 24 N 1.31620 * 120.00147 * 12.74359 * 23 21 19 25 25 Si 1.86797 * 119.99856 * 192.73782 * 23 21 19 26 26 H 1.48505 * 109.47035 * 90.00242 * 25 23 21 27 27 H 1.48505 * 109.47079 * 210.00201 * 25 23 21 28 28 H 1.48495 * 109.47434 * 330.00078 * 25 23 21 29 29 H 1.08997 * 109.47519 * 300.00034 * 1 2 3 30 30 H 1.08998 * 109.46793 * 60.00362 * 1 2 3 31 31 H 1.09005 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47370 * 65.00197 * 4 2 1 33 33 H 1.09009 * 109.47037 * 304.99715 * 4 2 1 34 34 H 0.96996 * 119.99984 * 359.97438 * 5 4 2 35 35 H 1.07995 * 119.97910 * 359.71863 * 9 8 6 36 36 H 1.07996 * 119.78307 * 179.97438 * 10 9 8 37 37 H 1.08007 * 119.97010 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.22141 * 35.89873 * 15 14 13 39 39 H 1.09001 * 109.22477 * 155.29356 * 15 14 13 40 40 H 1.08995 * 108.90403 * 185.51647 * 16 15 14 41 41 H 1.08997 * 108.90108 * 304.12340 * 16 15 14 42 42 H 1.09007 * 109.21563 * 55.52077 * 17 16 15 43 43 H 1.09001 * 109.21333 * 174.88884 * 17 16 15 44 44 H 1.09002 * 109.46956 * 94.31669 * 20 19 2 45 45 H 1.09000 * 109.47390 * 214.31331 * 20 19 2 46 46 H 1.09000 * 109.46966 * 334.31141 * 20 19 2 47 47 H 0.97001 * 119.99803 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1910 7 8 3.5686 -1.8845 -3.1422 8 6 5.6437 -1.5338 -2.1321 9 6 6.3461 -1.0107 -1.0409 10 6 7.7185 -1.1169 -0.9892 11 6 8.4138 -1.7412 -2.0133 12 6 7.7306 -2.2637 -3.0970 13 6 6.3482 -2.1630 -3.1633 14 8 5.6848 -2.6779 -4.2353 15 6 5.6886 -4.1027 -4.3468 16 6 6.9537 -4.5855 -5.0388 17 6 8.2058 -4.2889 -4.2287 18 8 8.4100 -2.8798 -4.1078 19 7 2.0183 -0.6906 1.1962 20 6 1.6644 -2.0931 1.4281 21 6 2.8055 -0.0250 2.0976 22 1 2.7850 1.0539 2.1393 23 6 3.6299 -0.7372 2.9578 24 7 3.8495 -2.0181 2.7490 25 14 4.4279 0.1223 4.4118 26 1 3.5328 0.0306 5.5932 27 1 5.7252 -0.5307 4.7218 28 1 4.6602 1.5501 4.0763 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7518 -0.1584 -2.1369 33 1 1.6054 -1.7199 -1.2951 34 1 3.9824 -0.4622 -0.4318 35 1 5.8119 -0.5231 -0.2390 36 1 8.2564 -0.7113 -0.1451 37 1 9.4899 -1.8206 -1.9646 38 1 5.6354 -4.5408 -3.3501 39 1 4.8206 -4.4199 -4.9249 40 1 6.8815 -5.6616 -5.1960 41 1 7.0364 -4.0923 -6.0073 42 1 8.1008 -4.7227 -3.2342 43 1 9.0680 -4.7344 -4.7250 44 1 2.4539 -2.7361 1.0391 45 1 1.5487 -2.2666 2.4980 46 1 0.7273 -2.3202 0.9198 47 1 4.4253 -2.5158 3.3504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282476981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:38 Heat of formation + Delta-G solvation = -54.417934 kcal Electronic energy + Delta-G solvation = -30187.883911 eV Core-core repulsion = 26144.496349 eV Total energy + Delta-G solvation = -4043.387562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.91706 -39.07383 -37.41012 -37.26972 -36.51074 -33.68582 -32.92977 -32.11289 -30.74673 -29.29142 -29.02427 -26.68915 -26.06835 -25.75044 -23.62411 -22.95518 -21.94159 -21.73579 -19.95152 -19.38116 -18.43380 -17.15143 -16.99399 -16.93516 -16.12033 -15.59863 -15.39114 -15.21069 -15.00744 -14.88407 -14.41751 -14.03330 -13.97718 -13.70680 -13.58107 -13.24993 -12.83510 -12.74124 -12.31675 -12.20282 -12.13367 -12.02593 -11.79678 -11.58318 -11.16844 -11.09002 -10.95419 -10.84753 -10.72575 -10.43180 -10.41961 -10.31268 -10.05308 -9.89366 -9.81333 -9.23676 -8.81280 -8.63786 -8.44615 -8.27864 -6.86324 -5.80105 -3.27330 0.88884 1.16075 3.05806 3.30911 3.38627 3.39680 3.44733 3.64325 3.83279 4.09760 4.40509 4.54917 4.62906 4.89919 4.99380 5.04918 5.17663 5.26589 5.27398 5.32507 5.35579 5.37092 5.41177 5.53576 5.60626 5.69594 5.77519 5.89535 5.95489 6.08860 6.15341 6.18536 6.25185 6.37538 6.39502 6.44310 6.57469 6.68636 6.79671 6.89478 7.13258 7.16694 7.37063 7.63310 7.69004 7.75388 8.24491 8.30430 8.84900 9.15251 9.78539 10.28313 11.22669 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.003961 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.146447 B = 7067.137147 C = 8451.541050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.069 0.931 4 C 0.109 3.891 5 N -0.696 5.696 6 C 0.552 3.448 7 O -0.538 6.538 8 C -0.127 4.127 9 C -0.067 4.067 10 C -0.119 4.119 11 C -0.097 4.097 12 C 0.046 3.954 13 C 0.120 3.880 14 O -0.295 6.295 15 C 0.066 3.934 16 C -0.187 4.187 17 C 0.058 3.942 18 O -0.318 6.318 19 N -0.595 5.595 20 C 0.164 3.836 21 C -0.261 4.261 22 H 0.068 0.932 23 C 0.006 3.994 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.413 0.587 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.028 0.972 45 H 0.042 0.958 46 H -0.002 1.002 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -2.940 -10.385 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.348 5.348 6 C 0.338 3.662 7 O -0.417 6.417 8 C -0.131 4.131 9 C -0.085 4.085 10 C -0.137 4.137 11 C -0.116 4.116 12 C 0.002 3.998 13 C 0.074 3.926 14 O -0.210 6.210 15 C -0.009 4.009 16 C -0.225 4.225 17 C -0.017 4.017 18 O -0.235 6.235 19 N -0.318 5.318 20 C 0.019 3.981 21 C -0.391 4.391 22 H 0.086 0.914 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.251 0.749 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.664 -3.217 -11.215 13.436 hybrid contribution 0.706 0.122 1.494 1.657 sum 7.370 -3.096 -9.720 12.585 Atomic orbital electron populations 1.22166 0.97462 1.01456 1.00665 1.20654 0.92633 0.95889 0.85943 0.91325 1.21934 0.79795 1.00992 0.98953 1.45770 1.08143 1.58013 1.22866 1.17890 0.86245 0.79065 0.83008 1.90750 1.69444 1.48098 1.33404 1.20188 0.94376 1.04324 0.94222 1.21543 0.94498 0.96278 0.96220 1.21028 0.93996 0.99998 0.98711 1.21211 1.00669 0.98512 0.91181 1.19025 0.89362 1.00973 0.90440 1.19130 0.89079 0.96811 0.87593 1.86403 1.72948 1.20634 1.41001 1.22535 0.97792 0.79783 1.00763 1.22518 0.95623 1.02522 1.01860 1.22645 0.98409 0.80370 1.00232 1.86371 1.66839 1.21228 1.49032 1.43955 1.57865 1.09672 1.20272 1.20746 0.93965 0.84454 0.98895 1.19245 1.16762 0.91003 1.12067 0.91387 1.24970 0.98035 0.96084 1.00187 1.70093 1.39548 1.07295 1.37584 0.86341 0.78568 0.78810 0.83309 1.21604 1.21789 1.20503 0.92437 0.93527 0.92960 0.92768 0.92396 0.74931 0.83790 0.84489 0.84701 0.92638 0.87844 0.89344 0.89924 0.92414 0.88033 0.95344 0.93949 0.98340 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.18 37.16 0.34 -2.25 16 2 C 0.16 2.98 2.87 -67.93 -0.19 2.78 16 3 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 4 C 0.11 2.06 4.97 -4.04 -0.02 2.04 16 5 N -0.70 -13.63 5.34 -61.34 -0.33 -13.96 16 6 C 0.55 11.14 7.77 -12.47 -0.10 11.05 16 7 O -0.54 -12.04 15.18 -16.49 -0.25 -12.29 16 8 C -0.13 -2.30 5.88 -104.88 -0.62 -2.92 16 9 C -0.07 -1.06 9.54 -39.13 -0.37 -1.44 16 10 C -0.12 -1.60 10.02 -39.61 -0.40 -1.99 16 11 C -0.10 -1.26 9.99 -39.39 -0.39 -1.66 16 12 C 0.05 0.69 5.73 -39.34 -0.23 0.47 16 13 C 0.12 2.08 5.73 -38.79 -0.22 1.86 16 14 O -0.29 -5.23 8.26 -49.13 -0.41 -5.64 16 15 C 0.07 0.90 6.51 36.68 0.24 1.14 16 16 C -0.19 -1.92 5.92 -27.69 -0.16 -2.09 16 17 C 0.06 0.61 6.51 36.68 0.24 0.85 16 18 O -0.32 -4.45 10.17 -36.78 -0.37 -4.82 16 19 N -0.59 -13.45 2.29 -173.49 -0.40 -13.85 16 20 C 0.16 3.84 8.11 59.85 0.49 4.32 16 21 C -0.26 -6.43 9.33 -15.06 -0.14 -6.57 16 22 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 23 C 0.01 0.16 5.10 -17.43 -0.09 0.07 16 24 N -0.90 -23.93 10.64 55.49 0.59 -23.34 16 25 Si 0.90 20.23 29.57 -169.99 -5.03 15.21 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.87 6.66 -51.93 -0.35 0.52 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.17 7.84 -51.92 -0.41 0.76 16 34 H 0.41 8.27 5.93 -40.82 -0.24 8.03 16 35 H 0.14 2.36 6.42 -52.49 -0.34 2.02 16 36 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 39 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.59 7.93 -51.92 -0.41 0.18 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16 45 H 0.04 1.08 7.20 -51.93 -0.37 0.70 16 46 H 0.00 -0.04 6.43 -51.93 -0.33 -0.37 16 47 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -30.29 376.79 -9.15 -39.44 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.01 Total: 7.91 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.63 Total: 5.66 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.13 Total: -51.15 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.03 Total: -22.75 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.29 -9.15 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282476981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.977 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds