Wall clock time and date at job start Tue Mar 31 2020 17:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47131 * 2 1 4 4 C 1.53000 * 109.47284 * 239.99905 * 2 1 3 5 5 N 1.46506 * 109.47030 * 185.00331 * 4 2 1 6 6 C 1.34774 * 120.00091 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99931 * 359.97438 * 6 5 4 8 8 C 1.47541 * 120.00429 * 179.97438 * 6 5 4 9 9 C 1.39916 * 120.31195 * 359.97438 * 8 6 5 10 10 C 1.37747 * 120.04343 * 179.74424 * 9 8 6 11 11 C 1.38640 * 120.44259 * 359.96147 * 10 9 8 12 12 C 1.38358 * 120.06378 * 359.97438 * 11 10 9 13 13 C 1.38771 * 120.12973 * 0.08336 * 12 11 10 14 14 O 1.36180 * 119.70064 * 179.87113 * 13 12 11 15 15 C 1.42915 * 115.91752 * 68.38279 * 14 13 12 16 16 C 1.52066 * 110.74489 * 275.57918 * 15 14 13 17 17 C 1.52059 * 112.37593 * 64.76881 * 16 15 14 18 18 O 1.36486 * 120.31260 * 180.02562 * 12 11 10 19 19 N 1.46504 * 109.46970 * 119.99761 * 2 1 3 20 20 C 1.46498 * 120.00052 * 60.00177 * 19 2 1 21 21 C 1.36936 * 119.99645 * 240.00192 * 19 2 1 22 22 H 1.07993 * 120.00750 * 21.91646 * 21 19 2 23 23 C 1.38816 * 119.99602 * 201.91336 * 21 19 2 24 24 N 1.31620 * 120.00147 * 12.74359 * 23 21 19 25 25 Si 1.86797 * 119.99856 * 192.73782 * 23 21 19 26 26 H 1.48505 * 109.47035 * 90.00242 * 25 23 21 27 27 H 1.48505 * 109.47079 * 210.00201 * 25 23 21 28 28 H 1.48495 * 109.47434 * 330.00078 * 25 23 21 29 29 H 1.08997 * 109.47519 * 300.00034 * 1 2 3 30 30 H 1.08998 * 109.46793 * 60.00362 * 1 2 3 31 31 H 1.09005 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47370 * 65.00197 * 4 2 1 33 33 H 1.09009 * 109.47037 * 304.99715 * 4 2 1 34 34 H 0.96996 * 119.99984 * 359.97438 * 5 4 2 35 35 H 1.07995 * 119.97910 * 359.71863 * 9 8 6 36 36 H 1.07996 * 119.78307 * 179.97438 * 10 9 8 37 37 H 1.08007 * 119.97010 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.22141 * 35.89873 * 15 14 13 39 39 H 1.09001 * 109.22477 * 155.29356 * 15 14 13 40 40 H 1.08995 * 108.90403 * 185.51647 * 16 15 14 41 41 H 1.08997 * 108.90108 * 304.12340 * 16 15 14 42 42 H 1.09007 * 109.21563 * 55.52077 * 17 16 15 43 43 H 1.09001 * 109.21333 * 174.88884 * 17 16 15 44 44 H 1.09002 * 109.46956 * 94.31669 * 20 19 2 45 45 H 1.09000 * 109.47390 * 214.31331 * 20 19 2 46 46 H 1.09000 * 109.46966 * 334.31141 * 20 19 2 47 47 H 0.97001 * 119.99803 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1910 7 8 3.5686 -1.8845 -3.1422 8 6 5.6437 -1.5338 -2.1321 9 6 6.3461 -1.0107 -1.0409 10 6 7.7185 -1.1169 -0.9892 11 6 8.4138 -1.7412 -2.0133 12 6 7.7306 -2.2637 -3.0970 13 6 6.3482 -2.1630 -3.1633 14 8 5.6848 -2.6779 -4.2353 15 6 5.6886 -4.1027 -4.3468 16 6 6.9537 -4.5855 -5.0388 17 6 8.2058 -4.2889 -4.2287 18 8 8.4100 -2.8798 -4.1078 19 7 2.0183 -0.6906 1.1962 20 6 1.6644 -2.0931 1.4281 21 6 2.8055 -0.0250 2.0976 22 1 2.7850 1.0539 2.1393 23 6 3.6299 -0.7372 2.9578 24 7 3.8495 -2.0181 2.7490 25 14 4.4279 0.1223 4.4118 26 1 3.5328 0.0306 5.5932 27 1 5.7252 -0.5307 4.7218 28 1 4.6602 1.5501 4.0763 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7518 -0.1584 -2.1369 33 1 1.6054 -1.7199 -1.2951 34 1 3.9824 -0.4622 -0.4318 35 1 5.8119 -0.5231 -0.2390 36 1 8.2564 -0.7113 -0.1451 37 1 9.4899 -1.8206 -1.9646 38 1 5.6354 -4.5408 -3.3501 39 1 4.8206 -4.4199 -4.9249 40 1 6.8815 -5.6616 -5.1960 41 1 7.0364 -4.0923 -6.0073 42 1 8.1008 -4.7227 -3.2342 43 1 9.0680 -4.7344 -4.7250 44 1 2.4539 -2.7361 1.0391 45 1 1.5487 -2.2666 2.4980 46 1 0.7273 -2.3202 0.9198 47 1 4.4253 -2.5158 3.3504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282476981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:37 Heat of formation + Delta-G solvation = -71.555468 kcal Electronic energy + Delta-G solvation = -30188.627050 eV Core-core repulsion = 26144.496349 eV Total energy + Delta-G solvation = -4044.130701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.07881 -40.51888 -38.59107 -38.56122 -38.04142 -35.37081 -34.03164 -33.67489 -32.05080 -30.98198 -30.17047 -27.98961 -27.77327 -27.08447 -25.09563 -24.56165 -23.03366 -22.78271 -21.36738 -20.97390 -19.63351 -18.81498 -18.38258 -18.15266 -17.40276 -17.10828 -16.78085 -16.49077 -16.30997 -16.08088 -15.90462 -15.55100 -15.12480 -15.07483 -14.81856 -14.61418 -14.40868 -14.18605 -13.83237 -13.64943 -13.37306 -13.21727 -13.13897 -12.90127 -12.81792 -12.59428 -12.46595 -12.25927 -12.19229 -12.05494 -11.92496 -11.71464 -11.47305 -11.38486 -11.26538 -10.68035 -10.57233 -10.11240 -9.78728 -9.59410 -8.75799 -7.73713 -5.22562 -0.33958 0.01613 1.51454 1.55834 1.61628 1.78349 2.22994 2.41839 2.51900 2.56179 2.85444 3.39584 3.61161 3.68032 3.68237 3.79170 3.88594 4.03339 4.10425 4.16915 4.23333 4.30414 4.33881 4.37046 4.39629 4.53785 4.62233 4.71305 4.75594 4.79176 4.84247 4.85327 5.04528 5.05841 5.09237 5.12281 5.27430 5.28219 5.31904 5.46218 5.49102 5.62643 5.72795 5.76804 6.09504 6.38305 6.49738 6.66292 7.21305 7.28034 7.92095 8.38462 9.27735 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.003961 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.146447 B = 7067.137147 C = 8451.541050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.074 0.926 4 C 0.115 3.885 5 N -0.697 5.697 6 C 0.547 3.453 7 O -0.569 6.569 8 C -0.157 4.157 9 C -0.075 4.075 10 C -0.111 4.111 11 C -0.082 4.082 12 C 0.044 3.956 13 C 0.102 3.898 14 O -0.325 6.325 15 C 0.056 3.944 16 C -0.179 4.179 17 C 0.050 3.950 18 O -0.329 6.329 19 N -0.602 5.602 20 C 0.183 3.817 21 C -0.262 4.262 22 H 0.074 0.926 23 C -0.037 4.037 24 N -0.928 5.928 25 Si 0.957 3.043 26 H -0.298 1.298 27 H -0.296 1.296 28 H -0.267 1.267 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.410 0.590 35 H 0.134 0.866 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.045 0.955 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.137 0.863 44 H -0.002 1.002 45 H 0.016 0.984 46 H 0.021 0.979 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.622 -2.463 -10.712 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.092 0.908 4 C -0.011 4.011 5 N -0.347 5.347 6 C 0.335 3.665 7 O -0.451 6.451 8 C -0.160 4.160 9 C -0.094 4.094 10 C -0.128 4.128 11 C -0.100 4.100 12 C 0.000 4.000 13 C 0.057 3.943 14 O -0.241 6.241 15 C -0.018 4.018 16 C -0.216 4.216 17 C -0.024 4.024 18 O -0.246 6.246 19 N -0.325 5.325 20 C 0.038 3.962 21 C -0.392 4.392 22 H 0.091 0.909 23 C -0.233 4.233 24 N -0.574 5.574 25 Si 0.787 3.213 26 H -0.226 1.226 27 H -0.223 1.223 28 H -0.192 1.192 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.248 0.752 35 H 0.152 0.848 36 H 0.186 0.814 37 H 0.189 0.811 38 H 0.063 0.937 39 H 0.125 0.875 40 H 0.141 0.859 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.155 0.845 44 H 0.017 0.983 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.270 -2.713 -11.555 14.466 hybrid contribution 0.194 -0.054 1.524 1.538 sum 8.464 -2.767 -10.031 13.413 Atomic orbital electron populations 1.22056 0.94999 1.01654 1.02078 1.20833 0.94314 0.95541 0.84316 0.90761 1.21900 0.79509 1.00212 0.99499 1.45820 1.08411 1.57876 1.22635 1.18316 0.87437 0.78301 0.82462 1.90709 1.70373 1.49497 1.34480 1.20143 0.93161 1.06754 0.95976 1.21533 0.95797 0.96736 0.95365 1.21360 0.92827 0.98985 0.99666 1.21592 1.02291 0.96377 0.89758 1.19186 0.88549 1.01096 0.91204 1.19375 0.90202 0.97290 0.87480 1.86328 1.73760 1.22683 1.41323 1.22779 1.00103 0.78158 1.00744 1.22471 0.93766 1.04414 1.00959 1.22975 0.99806 0.78682 1.00893 1.86345 1.66394 1.23061 1.48778 1.44081 1.57758 1.09324 1.21379 1.20399 0.93914 0.84756 0.97109 1.19519 1.16213 0.91340 1.12091 0.90856 1.25555 0.98949 0.96564 1.02273 1.70252 1.40441 1.08495 1.38194 0.85428 0.77159 0.78467 0.80272 1.22552 1.22324 1.19209 0.92568 0.90553 0.93350 0.91368 0.94032 0.75244 0.84847 0.81412 0.81098 0.93680 0.87531 0.85918 0.90205 0.92173 0.84535 0.98344 0.96544 0.96107 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 9.18 71.98 0.66 -3.95 16 2 C 0.16 5.84 2.87 44.99 0.13 5.97 16 3 H 0.07 2.69 7.86 -2.39 -0.02 2.67 16 4 C 0.11 4.35 4.97 86.38 0.43 4.78 16 5 N -0.70 -28.13 5.34 -466.25 -2.49 -30.61 16 6 C 0.55 23.06 7.77 86.70 0.67 23.74 16 7 O -0.57 -26.64 15.18 16.82 0.26 -26.39 16 8 C -0.16 -5.84 5.88 -20.03 -0.12 -5.96 16 9 C -0.08 -2.43 9.54 22.56 0.22 -2.21 16 10 C -0.11 -2.76 10.02 22.25 0.22 -2.53 16 11 C -0.08 -1.93 9.99 22.39 0.22 -1.70 16 12 C 0.04 1.27 5.73 22.43 0.13 1.40 16 13 C 0.10 3.61 5.73 22.78 0.13 3.74 16 14 O -0.32 -11.90 8.26 -68.05 -0.56 -12.46 16 15 C 0.06 1.55 6.51 71.67 0.47 2.02 16 16 C -0.18 -3.37 5.92 29.98 0.18 -3.19 16 17 C 0.05 0.94 6.51 71.67 0.47 1.41 16 18 O -0.33 -8.55 10.17 -84.36 -0.86 -9.41 16 19 N -0.60 -27.31 2.29 -702.79 -1.61 -28.92 16 20 C 0.18 8.76 8.11 127.77 1.04 9.80 16 21 C -0.26 -12.83 9.33 84.03 0.78 -12.05 16 22 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 23 C -0.04 -1.89 5.10 84.86 0.43 -1.45 16 24 N -0.93 -50.37 10.64 21.65 0.23 -50.13 16 25 Si 0.96 41.57 29.57 68.60 2.03 43.60 16 26 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.30 -13.03 7.11 99.48 0.71 -12.33 16 28 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.53 6.66 -2.38 -0.02 1.52 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.04 1.71 7.84 -2.38 -0.02 1.69 16 34 H 0.41 16.95 5.93 -92.71 -0.55 16.40 16 35 H 0.13 4.50 6.42 -2.91 -0.02 4.48 16 36 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.04 1.29 7.93 -2.39 -0.02 1.27 16 39 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.10 7.93 -2.38 -0.02 1.08 16 43 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 45 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 46 H 0.02 0.88 6.43 -2.39 -0.02 0.86 16 47 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -67.49 376.79 3.49 -64.00 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.43 Total: 30.55 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 6.06 Total: 19.79 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -3.87 Total: -109.67 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -1.16 Total: -48.26 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -67.49 3.49 -64.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282476981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.553 kcal (2) G-P(sol) polarization free energy of solvation -67.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds