Wall clock time and date at job start Tue Mar 31 2020 17:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.53003 * 109.47229 * 240.00892 * 2 1 3 5 5 N 1.46498 * 109.47224 * 179.97438 * 4 2 1 6 6 C 1.34773 * 120.00282 * 179.97438 * 5 4 2 7 7 O 1.21352 * 119.99798 * 359.97438 * 6 5 4 8 8 C 1.49448 * 120.00406 * 179.97438 * 6 5 4 9 9 O 1.21349 * 119.99980 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00406 * 180.02562 * 8 6 5 11 11 C 1.46498 * 120.00282 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47407 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47240 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46977 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99835 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00112 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46796 * 90.00065 * 18 16 14 20 20 H 1.48496 * 109.47091 * 210.00402 * 18 16 14 21 21 H 1.48499 * 109.46974 * 330.00517 * 18 16 14 22 22 O 1.42894 * 109.47313 * 120.00299 * 2 1 3 23 23 C 1.35895 * 117.00154 * 275.09211 * 22 2 1 24 24 C 1.38737 * 120.05812 * 5.46272 * 23 22 2 25 25 C 1.38143 * 119.94711 * 180.29652 * 24 23 22 26 26 C 1.38267 * 120.05366 * 359.47123 * 25 24 23 27 27 C 1.38272 * 120.11130 * 0.50694 * 26 25 24 28 28 C 1.38141 * 120.05470 * 359.76792 * 27 26 25 29 29 H 1.09001 * 109.46584 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46872 * 299.99383 * 1 2 3 31 31 H 1.09002 * 109.47242 * 59.99772 * 1 2 3 32 32 H 1.09005 * 109.46831 * 299.99777 * 4 2 1 33 33 H 1.09002 * 109.47551 * 59.99525 * 4 2 1 34 34 H 0.97005 * 120.00040 * 359.97438 * 5 4 2 35 35 H 0.97008 * 119.99909 * 359.97438 * 10 8 6 36 36 H 1.08997 * 109.47453 * 300.00207 * 11 10 8 37 37 H 1.09002 * 109.47091 * 59.99871 * 11 10 8 38 38 H 1.09005 * 109.47161 * 300.00279 * 12 11 10 39 39 H 1.09002 * 109.47039 * 59.99915 * 12 11 10 40 40 H 1.08991 * 109.47139 * 299.99869 * 13 12 11 41 41 H 1.08994 * 109.47099 * 60.00384 * 13 12 11 42 42 H 0.97005 * 119.99858 * 180.02562 * 17 16 14 43 43 H 1.08001 * 120.01964 * 0.02750 * 24 23 22 44 44 H 1.07993 * 119.97132 * 179.69852 * 25 24 23 45 45 H 1.08001 * 119.94562 * 180.25587 * 26 25 24 46 46 H 1.08000 * 119.97058 * 179.74941 * 27 26 25 47 47 H 1.08002 * 120.02545 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2494 5 7 3.5050 -0.7205 -1.2497 6 6 4.1790 -1.3043 -2.2603 7 8 3.5722 -1.8308 -3.1699 8 6 5.6735 -1.3033 -2.2610 9 8 6.2802 -0.7772 -1.3512 10 7 6.3474 -1.8866 -3.2719 11 6 7.8124 -1.8860 -3.2722 12 6 8.3224 -2.6076 -4.5212 13 6 9.8524 -2.6065 -4.5218 14 6 10.3548 -3.3167 -5.7524 15 1 9.6530 -3.7275 -6.4632 16 6 11.7103 -3.4422 -5.9708 17 7 12.1487 -4.0616 -7.0450 18 14 12.9242 -2.7312 -4.7418 19 1 13.2465 -3.7551 -3.7156 20 1 14.1670 -2.3305 -5.4488 21 1 12.3238 -1.5429 -4.0840 22 8 2.0064 -0.6737 1.1667 23 6 2.1107 0.0620 2.3045 24 6 1.6563 1.3726 2.3288 25 6 1.7691 2.1203 3.4849 26 6 2.3244 1.5600 4.6205 27 6 2.7777 0.2539 4.5990 28 6 2.6723 -0.4961 3.4438 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6767 -1.7488 -1.2495 33 1 1.6767 -0.2072 -2.1393 34 1 3.9901 -0.3000 -0.5224 35 1 5.8624 -2.3075 -3.9990 36 1 8.1754 -0.8583 -3.2722 37 1 8.1761 -2.3997 -2.3822 38 1 7.9594 -3.6355 -4.5207 39 1 7.9587 -2.0943 -5.4113 40 1 10.2150 -1.5787 -4.5226 41 1 10.2165 -3.1196 -3.6317 42 1 13.1024 -4.1502 -7.1985 43 1 1.2187 1.8092 1.4432 44 1 1.4199 3.1421 3.5028 45 1 2.4080 2.1449 5.5246 46 1 3.2147 -0.1802 5.4862 47 1 3.0268 -1.5162 3.4274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322762204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:41 Heat of formation + Delta-G solvation = -94.854981 kcal Electronic energy + Delta-G solvation = -27141.324447 eV Core-core repulsion = 23096.183403 eV Total energy + Delta-G solvation = -4045.141044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98823 -40.48277 -38.70633 -38.04232 -35.95653 -35.23033 -33.36113 -32.66424 -31.48240 -31.27645 -30.08608 -28.02994 -27.07532 -24.41900 -23.75761 -22.88608 -22.27692 -21.44523 -20.77517 -20.05459 -18.92498 -18.52302 -17.11435 -16.76359 -16.68696 -16.23777 -16.15077 -15.95286 -15.35764 -15.34517 -15.03050 -14.84567 -14.26077 -14.11464 -13.98050 -13.80563 -13.66948 -13.32839 -13.01970 -12.97022 -12.75360 -12.72427 -12.08630 -12.01378 -11.97230 -11.79922 -11.75631 -11.50097 -11.14836 -11.11600 -10.92156 -10.18399 -9.98633 -9.79114 -9.59566 -9.54193 -9.43357 -9.24177 -9.07359 -8.64470 -8.56328 -6.06729 -4.05726 0.90184 1.01349 1.34879 2.22511 2.59530 3.15878 3.30509 3.36211 3.38123 3.41670 3.55595 3.97451 4.25599 4.34936 4.41371 4.43493 4.46617 4.47677 4.70457 4.88266 4.92946 4.95520 5.05751 5.11104 5.25321 5.26987 5.30376 5.43661 5.51107 5.56699 5.57471 5.85023 5.86819 5.93019 5.97522 6.11540 6.15578 6.32847 6.38710 6.53208 6.73700 6.81050 6.95054 7.19922 7.31334 7.33325 7.63615 7.74587 7.97485 8.49621 8.97306 9.55094 11.06444 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.001773 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.622793 B =15787.605158 C =17034.174327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.070 3.930 3 H 0.084 0.916 4 C 0.124 3.876 5 N -0.701 5.701 6 C 0.510 3.490 7 O -0.519 6.519 8 C 0.501 3.499 9 O -0.526 6.526 10 N -0.691 5.691 11 C 0.111 3.889 12 C -0.115 4.115 13 C -0.011 4.011 14 C -0.523 4.523 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 O -0.306 6.306 23 C 0.130 3.870 24 C -0.211 4.211 25 C -0.081 4.081 26 C -0.159 4.159 27 C -0.080 4.080 28 C -0.150 4.150 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.415 0.585 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.129 0.871 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.163 12.480 21.726 36.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.013 3.987 3 H 0.101 0.899 4 C 0.000 4.000 5 N -0.356 5.356 6 C 0.291 3.709 7 O -0.394 6.394 8 C 0.281 3.719 9 O -0.402 6.402 10 N -0.343 5.343 11 C -0.011 4.011 12 C -0.153 4.153 13 C -0.049 4.049 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 O -0.220 6.220 23 C 0.085 3.915 24 C -0.230 4.230 25 C -0.099 4.099 26 C -0.177 4.177 27 C -0.098 4.098 28 C -0.169 4.169 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.252 0.748 35 H 0.249 0.751 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.147 0.853 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.946 12.211 21.564 36.609 hybrid contribution 0.646 0.499 0.496 0.956 sum -26.299 12.711 22.060 36.604 Atomic orbital electron populations 1.22308 0.93408 1.04225 1.03610 1.22725 0.95404 0.97028 0.83534 0.89865 1.21607 0.79567 1.02783 0.96026 1.45625 1.07030 1.57620 1.25295 1.20307 0.88872 0.79198 0.82553 1.90774 1.69963 1.43397 1.35279 1.19968 0.87840 0.80549 0.83538 1.90765 1.69681 1.44354 1.35440 1.46011 1.08799 1.55414 1.24058 1.21852 0.76386 1.01951 1.00894 1.21746 0.99346 0.99655 0.94583 1.19504 0.90296 0.97272 0.97778 1.21092 0.92651 1.36141 1.06204 0.90931 1.25031 0.98469 0.94711 0.95275 1.69915 1.14483 1.42872 1.26814 0.86773 0.80711 0.80212 0.81577 1.20236 1.21364 1.18915 1.86175 1.81090 1.38232 1.16505 1.19015 0.95438 0.90323 0.86712 1.21314 1.07081 0.94365 1.00228 1.20966 0.97212 0.99401 0.92342 1.21101 1.01970 0.95882 0.98770 1.21016 0.97544 0.94016 0.97237 1.20516 1.03550 1.01484 0.91330 0.90729 0.91087 0.90301 0.89587 0.88702 0.74831 0.75126 0.91093 0.91096 0.91791 0.91782 0.96238 0.96661 0.92684 0.85303 0.85817 0.85908 0.85297 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 9.17 37.16 0.34 -0.42 16 2 C 0.07 0.42 2.31 -26.73 -0.06 0.35 16 3 H 0.08 0.42 6.32 -51.93 -0.33 0.10 16 4 C 0.12 0.91 5.37 -4.04 -0.02 0.89 16 5 N -0.70 -6.96 5.44 -60.73 -0.33 -7.29 16 6 C 0.51 6.49 7.89 -11.59 -0.09 6.40 16 7 O -0.52 -7.46 16.48 5.49 0.09 -7.37 16 8 C 0.50 7.27 7.89 -11.59 -0.09 7.18 16 9 O -0.53 -8.69 16.48 5.50 0.09 -8.60 16 10 N -0.69 -9.95 5.55 -60.73 -0.34 -10.29 16 11 C 0.11 1.80 5.67 -4.04 -0.02 1.77 16 12 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 13 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 14 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 15 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 18 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 22 O -0.31 -2.56 9.55 -19.41 -0.19 -2.75 16 23 C 0.13 1.08 6.60 -39.21 -0.26 0.82 16 24 C -0.21 -1.46 8.24 -39.43 -0.32 -1.79 16 25 C -0.08 -0.52 10.04 -39.61 -0.40 -0.92 16 26 C -0.16 -1.02 10.04 -39.56 -0.40 -1.42 16 27 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 28 C -0.15 -1.23 9.99 -39.43 -0.39 -1.62 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.30 6.90 -51.93 -0.36 -0.06 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.42 4.03 7.82 -40.82 -0.32 3.71 16 35 H 0.41 5.44 7.95 -40.82 -0.32 5.11 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 41 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.13 0.66 5.43 -52.49 -0.28 0.38 16 44 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -33.77 396.21 -8.44 -42.21 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.04 Total: 3.64 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.80 Total: -5.53 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.11 Total: -44.51 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.00 Total: -18.72 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.77 -8.44 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322762204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.648 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds