Wall clock time and date at job start Tue Mar 31 2020 17:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.53003 * 109.47229 * 240.00892 * 2 1 3 5 5 N 1.46498 * 109.47224 * 179.97438 * 4 2 1 6 6 C 1.34773 * 120.00282 * 179.97438 * 5 4 2 7 7 O 1.21352 * 119.99798 * 359.97438 * 6 5 4 8 8 C 1.49448 * 120.00406 * 179.97438 * 6 5 4 9 9 O 1.21349 * 119.99980 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00406 * 180.02562 * 8 6 5 11 11 C 1.46498 * 120.00282 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47407 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47240 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46977 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99856 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99835 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00112 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46796 * 90.00065 * 18 16 14 20 20 H 1.48496 * 109.47091 * 210.00402 * 18 16 14 21 21 H 1.48499 * 109.46974 * 330.00517 * 18 16 14 22 22 O 1.42894 * 109.47313 * 120.00299 * 2 1 3 23 23 C 1.35895 * 117.00154 * 275.09211 * 22 2 1 24 24 C 1.38737 * 120.05812 * 5.46272 * 23 22 2 25 25 C 1.38143 * 119.94711 * 180.29652 * 24 23 22 26 26 C 1.38267 * 120.05366 * 359.47123 * 25 24 23 27 27 C 1.38272 * 120.11130 * 0.50694 * 26 25 24 28 28 C 1.38141 * 120.05470 * 359.76792 * 27 26 25 29 29 H 1.09001 * 109.46584 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46872 * 299.99383 * 1 2 3 31 31 H 1.09002 * 109.47242 * 59.99772 * 1 2 3 32 32 H 1.09005 * 109.46831 * 299.99777 * 4 2 1 33 33 H 1.09002 * 109.47551 * 59.99525 * 4 2 1 34 34 H 0.97005 * 120.00040 * 359.97438 * 5 4 2 35 35 H 0.97008 * 119.99909 * 359.97438 * 10 8 6 36 36 H 1.08997 * 109.47453 * 300.00207 * 11 10 8 37 37 H 1.09002 * 109.47091 * 59.99871 * 11 10 8 38 38 H 1.09005 * 109.47161 * 300.00279 * 12 11 10 39 39 H 1.09002 * 109.47039 * 59.99915 * 12 11 10 40 40 H 1.08991 * 109.47139 * 299.99869 * 13 12 11 41 41 H 1.08994 * 109.47099 * 60.00384 * 13 12 11 42 42 H 0.97005 * 119.99858 * 180.02562 * 17 16 14 43 43 H 1.08001 * 120.01964 * 0.02750 * 24 23 22 44 44 H 1.07993 * 119.97132 * 179.69852 * 25 24 23 45 45 H 1.08001 * 119.94562 * 180.25587 * 26 25 24 46 46 H 1.08000 * 119.97058 * 179.74941 * 27 26 25 47 47 H 1.08002 * 120.02545 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2494 5 7 3.5050 -0.7205 -1.2497 6 6 4.1790 -1.3043 -2.2603 7 8 3.5722 -1.8308 -3.1699 8 6 5.6735 -1.3033 -2.2610 9 8 6.2802 -0.7772 -1.3512 10 7 6.3474 -1.8866 -3.2719 11 6 7.8124 -1.8860 -3.2722 12 6 8.3224 -2.6076 -4.5212 13 6 9.8524 -2.6065 -4.5218 14 6 10.3548 -3.3167 -5.7524 15 1 9.6530 -3.7275 -6.4632 16 6 11.7103 -3.4422 -5.9708 17 7 12.1487 -4.0616 -7.0450 18 14 12.9242 -2.7312 -4.7418 19 1 13.2465 -3.7551 -3.7156 20 1 14.1670 -2.3305 -5.4488 21 1 12.3238 -1.5429 -4.0840 22 8 2.0064 -0.6737 1.1667 23 6 2.1107 0.0620 2.3045 24 6 1.6563 1.3726 2.3288 25 6 1.7691 2.1203 3.4849 26 6 2.3244 1.5600 4.6205 27 6 2.7777 0.2539 4.5990 28 6 2.6723 -0.4961 3.4438 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6767 -1.7488 -1.2495 33 1 1.6767 -0.2072 -2.1393 34 1 3.9901 -0.3000 -0.5224 35 1 5.8624 -2.3075 -3.9990 36 1 8.1754 -0.8583 -3.2722 37 1 8.1761 -2.3997 -2.3822 38 1 7.9594 -3.6355 -4.5207 39 1 7.9587 -2.0943 -5.4113 40 1 10.2150 -1.5787 -4.5226 41 1 10.2165 -3.1196 -3.6317 42 1 13.1024 -4.1502 -7.1985 43 1 1.2187 1.8092 1.4432 44 1 1.4199 3.1421 3.5028 45 1 2.4080 2.1449 5.5246 46 1 3.2147 -0.1802 5.4862 47 1 3.0268 -1.5162 3.4274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322762204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:41 Heat of formation + Delta-G solvation = -118.351255 kcal Electronic energy + Delta-G solvation = -27142.343322 eV Core-core repulsion = 23096.183403 eV Total energy + Delta-G solvation = -4046.159919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.83912 -41.22424 -39.73415 -38.62942 -37.24950 -36.17239 -35.14536 -33.36205 -33.20765 -31.77030 -30.57524 -29.45922 -28.05790 -25.64879 -24.37739 -23.71695 -23.32220 -22.29264 -22.00389 -21.22787 -19.64987 -19.39707 -18.87470 -18.05076 -17.37704 -17.18345 -16.86956 -16.74649 -16.46103 -16.23309 -16.06187 -15.90818 -15.50873 -15.12573 -14.97678 -14.77869 -14.44616 -14.41598 -13.95952 -13.82299 -13.67941 -13.54618 -13.50213 -13.10139 -12.93171 -12.74332 -12.70355 -12.46227 -12.21969 -11.98884 -11.90630 -11.78519 -11.61829 -11.61088 -11.33870 -10.77116 -10.75496 -10.43716 -10.29376 -9.93282 -9.16312 -8.28511 -6.32972 0.27011 0.40556 0.50067 1.23602 1.38362 1.39850 1.51658 2.05599 2.10977 2.37327 2.56853 2.86269 3.07183 3.36806 3.46803 3.81130 3.91354 3.99817 4.01121 4.03219 4.16604 4.28503 4.35892 4.47122 4.49153 4.53203 4.57321 4.68402 4.80097 4.80415 4.85644 4.87879 5.01038 5.01457 5.09802 5.16435 5.22269 5.37149 5.45822 5.50048 5.54983 5.62792 5.64695 5.82779 5.86826 6.25733 6.27883 6.44425 6.63507 6.75297 6.86567 7.31751 8.87973 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.001773 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.622793 B =15787.605158 C =17034.174327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 H 0.095 0.905 4 C 0.120 3.880 5 N -0.688 5.688 6 C 0.514 3.486 7 O -0.538 6.538 8 C 0.502 3.498 9 O -0.547 6.547 10 N -0.688 5.688 11 C 0.124 3.876 12 C -0.105 4.105 13 C -0.011 4.011 14 C -0.533 4.533 15 H 0.035 0.965 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.244 1.244 22 O -0.324 6.324 23 C 0.114 3.886 24 C -0.216 4.216 25 C -0.087 4.087 26 C -0.166 4.166 27 C -0.088 4.088 28 C -0.174 4.174 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.417 0.583 35 H 0.419 0.581 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.266 0.734 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.161 14.498 23.725 39.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 H 0.113 0.887 4 C -0.002 4.002 5 N -0.341 5.341 6 C 0.295 3.705 7 O -0.415 6.415 8 C 0.283 3.717 9 O -0.425 6.425 10 N -0.340 5.340 11 C 0.001 3.999 12 C -0.143 4.143 13 C -0.049 4.049 14 C -0.571 4.571 15 H 0.053 0.947 16 C -0.194 4.194 17 N -0.592 5.592 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.167 1.167 22 O -0.239 6.239 23 C 0.069 3.931 24 C -0.234 4.234 25 C -0.105 4.105 26 C -0.184 4.184 27 C -0.105 4.105 28 C -0.192 4.192 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.254 0.746 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.989 14.241 23.585 39.274 hybrid contribution 0.872 -0.151 -0.148 0.898 sum -27.117 14.090 23.436 38.511 Atomic orbital electron populations 1.22290 0.91921 1.04214 1.04645 1.22827 0.96428 0.97077 0.82166 0.88697 1.21838 0.77734 1.03034 0.97586 1.45669 1.08197 1.56071 1.24195 1.19941 0.87925 0.79620 0.83052 1.90772 1.69905 1.44682 1.36184 1.20264 0.88718 0.79816 0.82922 1.90754 1.70322 1.45252 1.36153 1.45886 1.08158 1.55480 1.24445 1.21556 0.77409 1.01598 0.99353 1.21526 0.96506 1.00191 0.96028 1.19462 0.93252 0.96720 0.95470 1.21478 0.92352 1.35981 1.07296 0.94697 1.26028 1.00812 0.95211 0.97365 1.70072 1.15085 1.44828 1.29201 0.85659 0.77837 0.80200 0.78976 1.19229 1.21159 1.16728 1.86141 1.81518 1.39132 1.17112 1.19195 0.96168 0.91048 0.86705 1.21540 1.06851 0.93858 1.01177 1.21320 0.96688 1.00418 0.92062 1.21422 1.01448 0.95839 0.99686 1.21276 0.97477 0.94394 0.97394 1.20696 1.04608 1.01736 0.92210 0.91306 0.90895 0.88357 0.90147 0.87051 0.74599 0.74383 0.90875 0.90992 0.91812 0.91719 0.95630 0.95822 0.92536 0.83669 0.83631 0.83986 0.83766 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 9.17 71.98 0.66 -0.48 16 2 C 0.07 0.74 2.31 30.60 0.07 0.81 16 3 H 0.10 0.76 6.32 -2.38 -0.02 0.74 16 4 C 0.12 1.59 5.37 86.38 0.46 2.05 16 5 N -0.69 -12.81 5.44 -464.41 -2.53 -15.33 16 6 C 0.51 12.52 7.89 87.27 0.69 13.21 16 7 O -0.54 -14.91 16.48 -3.25 -0.05 -14.96 16 8 C 0.50 13.98 7.89 87.27 0.69 14.67 16 9 O -0.55 -17.42 16.48 -3.24 -0.05 -17.47 16 10 N -0.69 -18.93 5.55 -464.42 -2.58 -21.51 16 11 C 0.12 3.79 5.67 86.38 0.49 4.28 16 12 C -0.10 -3.78 5.27 30.59 0.16 -3.62 16 13 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 14 C -0.53 -30.34 9.66 25.60 0.25 -30.09 16 15 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 16 C 0.00 0.15 5.47 84.65 0.46 0.61 16 17 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 18 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 22 O -0.32 -5.23 9.55 -92.36 -0.88 -6.11 16 23 C 0.11 1.82 6.60 22.51 0.15 1.97 16 24 C -0.22 -2.64 8.24 22.37 0.18 -2.46 16 25 C -0.09 -0.94 10.04 22.25 0.22 -0.72 16 26 C -0.17 -1.86 10.04 22.28 0.22 -1.63 16 27 C -0.09 -1.14 10.04 22.25 0.22 -0.91 16 28 C -0.17 -2.84 9.99 22.37 0.22 -2.61 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.48 6.90 -2.39 -0.02 0.47 16 31 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.42 7.64 7.82 -92.70 -0.73 6.92 16 35 H 0.42 10.59 7.95 -92.70 -0.74 9.86 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 40 H 0.03 1.12 7.20 -2.39 -0.02 1.11 16 41 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 42 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 43 H 0.15 1.16 5.43 -2.91 -0.02 1.15 16 44 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 45 H 0.14 0.96 8.06 -2.91 -0.02 0.93 16 46 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 47 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -73.10 396.21 0.85 -72.25 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.52 Total: 21.94 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.28 Total: -5.31 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -4.80 Total: -96.23 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.99 Total: -38.55 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -73.10 0.85 -72.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322762204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.103 kcal (2) G-P(sol) polarization free energy of solvation -73.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds