Wall clock time and date at job start Tue Mar 31 2020 18:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 113.99953 * 2 1 4 4 C 1.53007 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46831 * 184.99660 * 4 3 2 6 6 C 1.52998 * 109.47211 * 305.00018 * 4 3 2 7 7 N 1.46506 * 109.46782 * 65.00036 * 4 3 2 8 8 C 1.34777 * 119.99873 * 155.00310 * 7 4 3 9 9 O 1.21351 * 119.99901 * 359.97438 * 8 7 4 10 10 C 1.49446 * 119.99872 * 179.97438 * 8 7 4 11 11 O 1.21351 * 120.00227 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99877 * 179.97438 * 10 8 7 13 13 C 1.46506 * 120.00271 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.46994 * 325.00812 * 13 12 10 15 15 C 1.52994 * 109.47477 * 205.00152 * 13 12 10 16 16 C 1.50700 * 109.46934 * 64.99861 * 15 13 12 17 17 H 1.07994 * 120.00058 * 0.02562 * 16 15 13 18 18 C 1.37877 * 120.00107 * 179.97438 * 16 15 13 19 19 N 1.31510 * 120.00133 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00023 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47574 * 89.99153 * 20 18 16 22 22 H 1.48500 * 109.47197 * 209.99629 * 20 18 16 23 23 H 1.48505 * 109.46963 * 329.99313 * 20 18 16 24 24 C 1.50704 * 109.46853 * 85.00362 * 13 12 10 25 25 C 1.38233 * 120.00097 * 39.72464 * 24 13 12 26 26 C 1.38234 * 120.00100 * 179.78962 * 25 24 13 27 27 C 1.38240 * 119.99876 * 0.44164 * 26 25 24 28 28 C 1.38236 * 119.99987 * 359.81685 * 27 26 25 29 29 C 1.38234 * 119.99780 * 220.00687 * 24 13 12 30 30 H 1.09003 * 109.47005 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47571 * 300.00113 * 1 2 3 32 32 H 1.09000 * 109.46868 * 60.00539 * 1 2 3 33 33 H 1.08997 * 109.47325 * 59.99852 * 3 2 1 34 34 H 1.08998 * 109.47242 * 299.99257 * 3 2 1 35 35 H 1.09002 * 109.47121 * 299.99744 * 6 4 3 36 36 H 1.09002 * 109.46901 * 59.99641 * 6 4 3 37 37 H 1.09001 * 109.47093 * 179.97438 * 6 4 3 38 38 H 0.96995 * 120.00050 * 334.72425 * 7 4 3 39 39 H 0.96999 * 120.00043 * 0.02562 * 12 10 8 40 40 H 1.09000 * 109.47370 * 185.00059 * 15 13 12 41 41 H 1.09002 * 109.47240 * 305.00444 * 15 13 12 42 42 H 0.97008 * 120.00208 * 180.02562 * 19 18 16 43 43 H 1.08008 * 119.99936 * 0.02562 * 25 24 13 44 44 H 1.07999 * 120.00495 * 180.28061 * 26 25 24 45 45 H 1.07997 * 119.99626 * 179.83506 * 27 26 25 46 46 H 1.07994 * 120.00154 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.00228 * 359.97286 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9784 2.1766 0.0902 6 6 3.9781 0.3198 1.1826 7 7 3.9766 0.5639 -1.2509 8 6 5.2208 0.7939 -1.7152 9 8 5.9755 1.5154 -1.0967 10 6 5.6711 0.1603 -2.9916 11 8 4.9166 -0.5616 -3.6098 12 7 6.9151 0.3906 -3.4561 13 6 7.3567 -0.2309 -4.7071 14 1 6.9143 -1.2231 -4.7958 15 6 8.8820 -0.3508 -4.7065 16 6 9.3108 -1.2994 -3.6169 17 1 8.5696 -1.7700 -2.9881 18 6 10.6494 -1.5673 -3.4234 19 7 11.0236 -2.3955 -2.4728 20 14 11.9315 -0.7538 -4.5114 21 1 12.3553 0.5318 -3.9008 22 1 13.1080 -1.6500 -4.6450 23 1 11.3503 -0.4964 -5.8536 24 6 6.9202 0.6197 -5.8721 25 6 6.9886 1.9976 -5.7857 26 6 6.5923 2.7778 -6.8559 27 6 6.1191 2.1801 -8.0091 28 6 6.0457 0.8023 -8.0935 29 6 6.4460 0.0221 -7.0248 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.6498 0.7816 2.1138 36 1 3.5350 -0.6721 1.0930 37 1 5.0647 0.2334 1.1828 38 1 3.3747 -0.0157 -1.7434 39 1 7.5183 0.9674 -2.9618 40 1 9.2171 -0.7307 -5.6716 41 1 9.3234 0.6299 -4.5288 42 1 11.9654 -2.5837 -2.3365 43 1 7.3553 2.4646 -4.8835 44 1 6.6500 3.8542 -6.7901 45 1 5.8070 2.7897 -8.8441 46 1 5.6756 0.3354 -8.9942 47 1 6.3887 -1.0544 -7.0908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324809335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:24 Heat of formation + Delta-G solvation = -118.699595 kcal Electronic energy + Delta-G solvation = -28855.502600 eV Core-core repulsion = 24809.327576 eV Total energy + Delta-G solvation = -4046.175024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84865 -40.53298 -39.53701 -38.89042 -37.10621 -36.29650 -34.71672 -32.72398 -32.24009 -31.71345 -31.00607 -28.29537 -27.41471 -26.64051 -25.45329 -23.63193 -23.28538 -22.28060 -21.56350 -21.24765 -19.63489 -19.06947 -18.21657 -17.71496 -17.41067 -17.03621 -16.92057 -16.62911 -16.36406 -16.19632 -16.01191 -15.64721 -15.26047 -15.07314 -14.86711 -14.58657 -14.32077 -14.20468 -14.12175 -13.95740 -13.62805 -13.54813 -13.21903 -13.05951 -12.82706 -12.74068 -12.50909 -12.34227 -12.11887 -12.06529 -11.98462 -11.81027 -11.76147 -11.48103 -10.80394 -10.71929 -10.59904 -10.36876 -10.20416 -9.77218 -9.57762 -8.28865 -6.34336 0.34928 0.46516 0.54625 1.34718 1.37698 1.38819 1.49796 2.15967 2.35309 2.61336 2.83167 2.95939 3.07228 3.46406 3.74299 3.86393 3.99830 4.01248 4.19707 4.28446 4.29361 4.33700 4.44810 4.48607 4.52478 4.59048 4.63242 4.70418 4.72975 4.74598 4.89623 4.92263 4.95492 5.11289 5.15188 5.19220 5.21312 5.32806 5.39581 5.54089 5.63491 5.63947 5.75253 5.97595 6.16098 6.19900 6.23091 6.38598 6.71992 6.74389 6.96780 7.29718 8.87597 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009383 B = 0.003606 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.296941 B = 7762.832061 C = 9895.001751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.058 3.942 4 C 0.138 3.862 5 H 0.107 0.893 6 C -0.157 4.157 7 N -0.683 5.683 8 C 0.513 3.487 9 O -0.540 6.540 10 C 0.501 3.499 11 O -0.549 6.549 12 N -0.668 5.668 13 C 0.202 3.798 14 H 0.070 0.930 15 C -0.005 4.005 16 C -0.524 4.524 17 H 0.031 0.969 18 C 0.011 3.989 19 N -0.947 5.947 20 Si 0.947 3.053 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.245 1.245 24 C -0.102 4.102 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.125 4.125 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.036 0.964 38 H 0.418 0.582 39 H 0.413 0.587 40 H 0.040 0.960 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.118 0.882 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.146 0.854 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.893 12.833 -2.170 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.019 4.019 4 C 0.035 3.965 5 H 0.124 0.876 6 C -0.216 4.216 7 N -0.336 5.336 8 C 0.293 3.707 9 O -0.417 6.417 10 C 0.282 3.718 11 O -0.427 6.427 12 N -0.318 5.318 13 C 0.098 3.902 14 H 0.088 0.912 15 C -0.043 4.043 16 C -0.562 4.562 17 H 0.049 0.951 18 C -0.187 4.187 19 N -0.587 5.587 20 Si 0.770 3.230 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.168 1.168 24 C -0.103 4.103 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.142 4.142 28 C -0.139 4.139 29 C -0.143 4.143 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.255 0.745 39 H 0.250 0.750 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.136 0.864 44 H 0.163 0.837 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.642 12.589 -2.069 23.421 hybrid contribution 0.860 -0.310 0.182 0.932 sum -18.782 12.279 -1.887 22.519 Atomic orbital electron populations 1.22907 0.79268 1.03673 1.01065 1.87884 1.21560 1.27968 1.95651 1.22858 0.90412 0.85493 1.03114 1.21415 0.94102 0.98292 0.82667 0.87557 1.22057 1.00503 1.00955 0.98045 1.45843 1.13220 1.49328 1.25249 1.20036 0.83429 0.81672 0.85533 1.90737 1.53792 1.37978 1.59209 1.20322 0.83199 0.82136 0.86157 1.90693 1.54202 1.38212 1.59637 1.45748 1.13280 1.48295 1.24480 1.19795 0.95742 0.94473 0.80194 0.91199 1.19752 0.90499 0.96966 0.97070 1.21206 0.92544 1.26316 1.16153 0.95102 1.25926 1.00996 0.95326 0.96441 1.70067 1.17217 1.37405 1.34039 0.85715 0.78148 0.78616 0.80532 1.19010 1.21233 1.16839 1.20283 0.99628 0.94880 0.95554 1.21093 1.00481 0.92866 0.99684 1.21421 0.98786 1.00776 0.93129 1.21502 0.99297 0.94881 0.98500 1.21411 0.99524 0.94405 0.98526 1.21191 0.99094 1.00484 0.93567 0.89134 0.92505 0.93242 0.88763 0.91460 0.88983 0.92009 0.94467 0.74505 0.75029 0.94190 0.94877 0.92494 0.86429 0.83704 0.83056 0.83580 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.29 9.55 -148.98 -1.42 -8.71 16 3 C 0.06 0.85 5.68 71.98 0.41 1.25 16 4 C 0.14 2.89 2.98 44.99 0.13 3.03 16 5 H 0.11 2.19 7.58 -2.39 -0.02 2.18 16 6 C -0.16 -3.47 9.29 71.98 0.67 -2.80 16 7 N -0.68 -18.48 5.05 -443.85 -2.24 -20.72 16 8 C 0.51 17.55 7.85 87.27 0.69 18.23 16 9 O -0.54 -20.25 16.14 -3.25 -0.05 -20.30 16 10 C 0.50 19.39 7.85 87.27 0.68 20.07 16 11 O -0.55 -22.80 16.14 -3.25 -0.05 -22.85 16 12 N -0.67 -26.55 4.01 -447.43 -1.80 -28.35 16 13 C 0.20 8.32 2.12 44.24 0.09 8.41 16 14 H 0.07 3.20 7.44 -2.39 -0.02 3.18 16 15 C -0.01 -0.24 3.56 29.85 0.11 -0.13 16 16 C -0.52 -29.73 9.39 25.60 0.24 -29.49 16 17 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 18 C 0.01 0.61 5.47 84.66 0.46 1.07 16 19 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 20 Si 0.95 43.68 27.47 68.60 1.88 45.56 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 24 C -0.10 -3.58 4.91 -19.87 -0.10 -3.68 16 25 C -0.12 -3.78 9.33 22.27 0.21 -3.57 16 26 C -0.12 -3.02 10.05 22.27 0.22 -2.80 16 27 C -0.12 -2.75 10.05 22.27 0.22 -2.52 16 28 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 29 C -0.12 -3.93 9.67 22.27 0.22 -3.72 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.45 7.56 -2.39 -0.02 1.43 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.42 11.05 7.86 -92.71 -0.73 10.32 16 39 H 0.41 16.23 8.07 -92.71 -0.75 15.49 16 40 H 0.04 1.82 7.20 -2.39 -0.02 1.80 16 41 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 42 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 43 H 0.12 3.53 7.71 -2.91 -0.02 3.51 16 44 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 46 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 47 H 0.12 3.70 8.04 -2.91 -0.02 3.67 16 Total: -1.00 -73.96 398.81 1.80 -72.16 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -0.55 Total: 40.20 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.73 Total: 2.14 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -3.74 Total: -108.20 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -1.53 Total: -51.87 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Total: -73.96 1.80 -72.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324809335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.537 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds