Wall clock time and date at job start Tue Mar 31 2020 17:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47068 * 2 1 4 4 C 1.52997 * 109.47483 * 240.00067 * 2 1 3 5 5 N 1.46496 * 109.47610 * 185.00037 * 4 2 1 6 6 C 1.46498 * 119.99989 * 270.00056 * 5 4 2 7 7 C 1.34775 * 120.00115 * 89.99989 * 5 4 2 8 8 O 1.21281 * 120.00033 * 359.97438 * 7 5 4 9 9 C 1.50705 * 120.00003 * 180.02562 * 7 5 4 10 10 C 1.53003 * 109.46892 * 179.97438 * 9 7 5 11 11 H 1.09001 * 109.69982 * 305.57762 * 10 9 7 12 12 C 1.53471 * 109.70554 * 184.99846 * 10 9 7 13 13 O 1.43179 * 108.23578 * 180.54396 * 12 10 9 14 14 C 1.36106 * 116.68623 * 46.28886 * 13 12 10 15 15 C 1.38703 * 119.38876 * 162.89987 * 14 13 12 16 16 C 1.38196 * 120.06583 * 180.13326 * 15 14 13 17 17 C 1.38255 * 120.11173 * 359.44312 * 16 15 14 18 18 C 1.38200 * 120.11329 * 0.34138 * 17 16 15 19 19 C 1.38703 * 120.06679 * 0.02562 * 18 17 16 20 20 O 1.36100 * 119.40553 * 179.59906 * 19 18 17 21 21 N 1.46502 * 109.47134 * 119.99857 * 2 1 3 22 22 C 1.36931 * 120.00204 * 274.99925 * 21 2 1 23 23 H 1.08007 * 119.99941 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00174 * 179.97438 * 22 21 2 25 25 N 1.31619 * 120.00069 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00090 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47282 * 90.00523 * 26 24 22 28 28 H 1.48507 * 109.47474 * 210.00196 * 26 24 22 29 29 H 1.48499 * 109.47280 * 330.00321 * 26 24 22 30 30 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47220 * 299.99864 * 1 2 3 32 32 H 1.08999 * 109.47131 * 59.99896 * 1 2 3 33 33 H 1.09000 * 109.46986 * 64.99865 * 4 2 1 34 34 H 1.09003 * 109.47315 * 305.00484 * 4 2 1 35 35 H 1.09002 * 109.47477 * 269.99815 * 6 5 4 36 36 H 1.09003 * 109.47625 * 29.99728 * 6 5 4 37 37 H 1.09004 * 109.47393 * 149.99422 * 6 5 4 38 38 H 1.08993 * 109.47109 * 59.99976 * 9 7 5 39 39 H 1.08994 * 109.46975 * 299.99679 * 9 7 5 40 40 H 1.09009 * 109.70930 * 60.85794 * 12 10 9 41 41 H 1.08996 * 109.74745 * 300.25363 * 12 10 9 42 42 H 1.07998 * 119.96930 * 359.84729 * 15 14 13 43 43 H 1.08002 * 119.94846 * 179.72881 * 16 15 14 44 44 H 1.07992 * 119.94650 * 180.31475 * 17 16 15 45 45 H 1.08000 * 119.96920 * 179.97438 * 18 17 16 46 46 H 0.96997 * 119.99826 * 95.00351 * 21 2 1 47 47 H 0.97001 * 120.00411 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7612 7 6 4.0757 -1.8986 -0.6116 8 8 3.3851 -2.7763 -0.1387 9 6 5.5777 -2.0065 -0.5508 10 6 5.9674 -3.3083 0.1523 11 1 5.4824 -3.3589 1.1271 12 6 7.4909 -3.3652 0.3287 13 8 7.8212 -4.5986 0.9765 14 6 7.2239 -5.7220 0.4931 15 6 7.7485 -6.9647 0.8164 16 6 7.1548 -8.1144 0.3310 17 6 6.0300 -8.0298 -0.4684 18 6 5.4997 -6.7949 -0.7907 19 6 6.0951 -5.6368 -0.3131 20 8 5.5664 -4.4276 -0.6455 21 7 2.0183 -0.6906 1.1962 22 6 2.1491 -0.0075 2.3757 23 1 1.8918 1.0404 2.4243 24 6 2.6113 -0.6620 3.5093 25 7 2.9243 -1.9390 3.4502 26 14 2.7891 0.2697 5.1185 27 1 1.5211 0.1784 5.8861 28 1 3.8934 -0.3235 5.9147 29 1 3.0941 1.6950 4.8343 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -0.1583 -2.1369 34 1 1.6054 -1.7198 -1.2952 35 1 4.5425 0.0094 -2.8073 36 1 3.8091 1.1867 -1.6919 37 1 5.2722 0.2954 -1.2091 38 1 5.9806 -1.1595 0.0044 39 1 5.9834 -2.0040 -1.5624 40 1 7.8214 -2.5274 0.9428 41 1 7.9764 -3.3204 -0.6461 42 1 8.6244 -7.0337 1.4443 43 1 7.5674 -9.0808 0.5804 44 1 5.5653 -8.9301 -0.8421 45 1 4.6212 -6.7315 -1.4157 46 1 2.2490 -1.6317 1.1526 47 1 3.2477 -2.3963 4.2422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331456972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:28 Heat of formation + Delta-G solvation = -60.942822 kcal Electronic energy + Delta-G solvation = -30037.856026 eV Core-core repulsion = 25994.185523 eV Total energy + Delta-G solvation = -4043.670502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16022 -39.43368 -37.62133 -37.06891 -35.88456 -34.34121 -32.78295 -31.84544 -30.56831 -29.22244 -28.60036 -27.45276 -26.82428 -25.17566 -23.72395 -23.30905 -22.58772 -20.59013 -19.96513 -18.99794 -18.42713 -17.44091 -17.22167 -16.73208 -16.38320 -15.68506 -15.30687 -15.02836 -14.96179 -14.70190 -14.34231 -14.21007 -13.81213 -13.73732 -13.65240 -13.23318 -12.94549 -12.84800 -12.62200 -12.28786 -12.17949 -11.90160 -11.86635 -11.70647 -11.66275 -11.37295 -11.16732 -11.10367 -10.80502 -10.71713 -10.62564 -10.35169 -10.25431 -10.00312 -9.53516 -9.15749 -8.82163 -8.55006 -8.05088 -7.92170 -6.80203 -5.61094 -2.90925 1.37945 1.41976 3.13795 3.19462 3.36742 3.45624 3.48296 3.51566 3.53481 3.82680 4.29069 4.66139 4.69469 4.77052 4.92095 5.02387 5.06509 5.21821 5.28413 5.31231 5.34501 5.43255 5.49647 5.51000 5.53882 5.64824 5.66431 5.79675 5.87402 5.89255 6.04950 6.05998 6.12207 6.20532 6.30379 6.31013 6.42583 6.51913 6.70112 6.71537 6.83831 6.98784 7.07002 7.18274 7.59150 7.77637 7.88164 8.55069 8.82829 9.67819 10.31598 10.70640 11.58826 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.003888 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.743936 B = 7199.264517 C = 8324.142386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.042 0.958 4 C 0.111 3.889 5 N -0.612 5.612 6 C 0.084 3.916 7 C 0.524 3.476 8 O -0.501 6.501 9 C -0.126 4.126 10 C 0.068 3.932 11 H 0.108 0.892 12 C 0.028 3.972 13 O -0.306 6.306 14 C 0.045 3.955 15 C -0.116 4.116 16 C -0.126 4.126 17 C -0.118 4.118 18 C -0.116 4.116 19 C 0.067 3.933 20 O -0.290 6.290 21 N -0.722 5.722 22 C -0.239 4.239 23 H 0.064 0.936 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.897 3.103 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.284 1.284 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.399 0.601 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 -3.812 -13.730 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.060 0.940 4 C -0.012 4.012 5 N -0.346 5.346 6 C -0.060 4.060 7 C 0.310 3.690 8 O -0.374 6.374 9 C -0.166 4.166 10 C 0.011 3.989 11 H 0.125 0.875 12 C -0.048 4.048 13 O -0.220 6.220 14 C 0.000 4.000 15 C -0.135 4.135 16 C -0.144 4.144 17 C -0.136 4.136 18 C -0.134 4.134 19 C 0.021 3.979 20 O -0.204 6.204 21 N -0.368 5.368 22 C -0.370 4.370 23 H 0.082 0.918 24 C -0.208 4.208 25 N -0.568 5.568 26 Si 0.729 3.271 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.210 1.210 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.237 0.763 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.798 -4.127 -13.333 17.053 hybrid contribution 0.079 0.702 1.084 1.294 sum 9.877 -3.425 -12.249 16.104 Atomic orbital electron populations 1.22415 0.99224 1.00974 0.99870 1.20636 0.91951 0.95480 0.87644 0.94011 1.21807 0.79291 1.02044 0.98047 1.47543 1.06682 1.20977 1.59414 1.21677 0.95622 0.91289 0.97399 1.19956 0.89536 0.81739 0.77734 1.90740 1.64003 1.39161 1.43482 1.21614 0.95705 0.96591 1.02737 1.22922 0.93812 0.85108 0.97011 0.87457 1.23677 0.95580 0.86141 0.99405 1.86296 1.65478 1.13649 1.56588 1.18971 0.93317 0.87794 0.99878 1.20386 1.01282 0.89268 1.02542 1.20831 0.96882 0.97564 0.99103 1.20872 0.96753 0.96693 0.99314 1.20475 1.00612 0.89589 1.02764 1.18995 0.92490 0.86944 0.99421 1.86364 1.66529 1.13331 1.54220 1.42737 1.77638 1.11798 1.04606 1.19194 1.36507 0.93603 0.87736 0.91806 1.24720 1.02656 0.95873 0.97598 1.69743 1.50495 1.08289 1.28223 0.86345 0.77290 0.78696 0.84764 1.21903 1.21942 1.21032 0.93383 0.92699 0.94655 0.91263 0.90334 0.93369 0.91243 0.91527 0.86738 0.88574 0.85954 0.90798 0.85150 0.85433 0.85386 0.84907 0.76267 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.49 37.15 0.35 -2.70 16 2 C 0.15 3.13 3.20 -67.93 -0.22 2.91 16 3 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 4 C 0.11 1.90 5.14 -4.05 -0.02 1.88 16 5 N -0.61 -9.99 2.77 -181.57 -0.50 -10.49 16 6 C 0.08 0.96 10.24 59.85 0.61 1.57 16 7 C 0.52 9.85 6.86 -10.98 -0.08 9.78 16 8 O -0.50 -11.88 12.79 -7.26 -0.09 -11.98 16 9 C -0.13 -1.82 3.98 -27.88 -0.11 -1.93 16 10 C 0.07 1.13 2.55 -26.49 -0.07 1.06 16 11 H 0.11 2.24 7.94 -51.93 -0.41 1.83 16 12 C 0.03 0.36 6.56 37.40 0.25 0.61 16 13 O -0.31 -4.80 10.42 -32.87 -0.34 -5.14 16 14 C 0.05 0.72 6.49 -39.14 -0.25 0.47 16 15 C -0.12 -1.55 9.96 -39.42 -0.39 -1.94 16 16 C -0.13 -1.45 10.04 -39.59 -0.40 -1.85 16 17 C -0.12 -1.42 10.04 -39.59 -0.40 -1.82 16 18 C -0.12 -1.69 9.96 -39.42 -0.39 -2.08 16 19 C 0.07 1.12 6.49 -39.14 -0.25 0.87 16 20 O -0.29 -5.18 9.40 -43.72 -0.41 -5.59 16 21 N -0.72 -18.76 4.52 -53.43 -0.24 -19.00 16 22 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 23 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.92 -28.72 13.06 55.49 0.72 -27.99 16 26 Si 0.90 22.82 29.55 -169.99 -5.02 17.79 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.08 1.49 7.42 -51.93 -0.39 1.10 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.07 0.68 6.44 -51.93 -0.33 0.34 16 38 H 0.11 1.44 7.40 -51.93 -0.38 1.05 16 39 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 40 H 0.12 1.32 8.14 -51.92 -0.42 0.89 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 46 H 0.40 11.34 5.02 -40.82 -0.20 11.14 16 47 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -36.52 384.05 -8.89 -45.42 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -7.17 Total: 11.75 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.61 Total: -0.55 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.02 Total: -57.49 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.85 Total: -22.70 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.52 -8.89 -45.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331456972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.528 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds