Wall clock time and date at job start Tue Mar 31 2020 17:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47068 * 2 1 4 4 C 1.52997 * 109.47483 * 240.00067 * 2 1 3 5 5 N 1.46496 * 109.47610 * 185.00037 * 4 2 1 6 6 C 1.46498 * 119.99989 * 270.00056 * 5 4 2 7 7 C 1.34775 * 120.00115 * 89.99989 * 5 4 2 8 8 O 1.21281 * 120.00033 * 359.97438 * 7 5 4 9 9 C 1.50705 * 120.00003 * 180.02562 * 7 5 4 10 10 C 1.53003 * 109.46892 * 179.97438 * 9 7 5 11 11 H 1.09001 * 109.69982 * 305.57762 * 10 9 7 12 12 C 1.53471 * 109.70554 * 184.99846 * 10 9 7 13 13 O 1.43179 * 108.23578 * 180.54396 * 12 10 9 14 14 C 1.36106 * 116.68623 * 46.28886 * 13 12 10 15 15 C 1.38703 * 119.38876 * 162.89987 * 14 13 12 16 16 C 1.38196 * 120.06583 * 180.13326 * 15 14 13 17 17 C 1.38255 * 120.11173 * 359.44312 * 16 15 14 18 18 C 1.38200 * 120.11329 * 0.34138 * 17 16 15 19 19 C 1.38703 * 120.06679 * 0.02562 * 18 17 16 20 20 O 1.36100 * 119.40553 * 179.59906 * 19 18 17 21 21 N 1.46502 * 109.47134 * 119.99857 * 2 1 3 22 22 C 1.36931 * 120.00204 * 274.99925 * 21 2 1 23 23 H 1.08007 * 119.99941 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00174 * 179.97438 * 22 21 2 25 25 N 1.31619 * 120.00069 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00090 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47282 * 90.00523 * 26 24 22 28 28 H 1.48507 * 109.47474 * 210.00196 * 26 24 22 29 29 H 1.48499 * 109.47280 * 330.00321 * 26 24 22 30 30 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47220 * 299.99864 * 1 2 3 32 32 H 1.08999 * 109.47131 * 59.99896 * 1 2 3 33 33 H 1.09000 * 109.46986 * 64.99865 * 4 2 1 34 34 H 1.09003 * 109.47315 * 305.00484 * 4 2 1 35 35 H 1.09002 * 109.47477 * 269.99815 * 6 5 4 36 36 H 1.09003 * 109.47625 * 29.99728 * 6 5 4 37 37 H 1.09004 * 109.47393 * 149.99422 * 6 5 4 38 38 H 1.08993 * 109.47109 * 59.99976 * 9 7 5 39 39 H 1.08994 * 109.46975 * 299.99679 * 9 7 5 40 40 H 1.09009 * 109.70930 * 60.85794 * 12 10 9 41 41 H 1.08996 * 109.74745 * 300.25363 * 12 10 9 42 42 H 1.07998 * 119.96930 * 359.84729 * 15 14 13 43 43 H 1.08002 * 119.94846 * 179.72881 * 16 15 14 44 44 H 1.07992 * 119.94650 * 180.31475 * 17 16 15 45 45 H 1.08000 * 119.96920 * 179.97438 * 18 17 16 46 46 H 0.96997 * 119.99826 * 95.00351 * 21 2 1 47 47 H 0.97001 * 120.00411 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7612 7 6 4.0757 -1.8986 -0.6116 8 8 3.3851 -2.7763 -0.1387 9 6 5.5777 -2.0065 -0.5508 10 6 5.9674 -3.3083 0.1523 11 1 5.4824 -3.3589 1.1271 12 6 7.4909 -3.3652 0.3287 13 8 7.8212 -4.5986 0.9765 14 6 7.2239 -5.7220 0.4931 15 6 7.7485 -6.9647 0.8164 16 6 7.1548 -8.1144 0.3310 17 6 6.0300 -8.0298 -0.4684 18 6 5.4997 -6.7949 -0.7907 19 6 6.0951 -5.6368 -0.3131 20 8 5.5664 -4.4276 -0.6455 21 7 2.0183 -0.6906 1.1962 22 6 2.1491 -0.0075 2.3757 23 1 1.8918 1.0404 2.4243 24 6 2.6113 -0.6620 3.5093 25 7 2.9243 -1.9390 3.4502 26 14 2.7891 0.2697 5.1185 27 1 1.5211 0.1784 5.8861 28 1 3.8934 -0.3235 5.9147 29 1 3.0941 1.6950 4.8343 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -0.1583 -2.1369 34 1 1.6054 -1.7198 -1.2952 35 1 4.5425 0.0094 -2.8073 36 1 3.8091 1.1867 -1.6919 37 1 5.2722 0.2954 -1.2091 38 1 5.9806 -1.1595 0.0044 39 1 5.9834 -2.0040 -1.5624 40 1 7.8214 -2.5274 0.9428 41 1 7.9764 -3.3204 -0.6461 42 1 8.6244 -7.0337 1.4443 43 1 7.5674 -9.0808 0.5804 44 1 5.5653 -8.9301 -0.8421 45 1 4.6212 -6.7315 -1.4157 46 1 2.2490 -1.6317 1.1526 47 1 3.2477 -2.3963 4.2422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331456972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:27 Heat of formation + Delta-G solvation = -85.279244 kcal Electronic energy + Delta-G solvation = -30038.911332 eV Core-core repulsion = 25994.185523 eV Total energy + Delta-G solvation = -4044.725809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29996 -40.79836 -38.70147 -38.25331 -37.48629 -35.91785 -34.19037 -33.60263 -31.61678 -30.69372 -30.17050 -28.69119 -27.91824 -26.44201 -25.67277 -24.62143 -23.66736 -21.82407 -21.45078 -20.30039 -19.69404 -19.18708 -18.55125 -17.86640 -17.74855 -17.05839 -16.71260 -16.48038 -16.16950 -15.97967 -15.64688 -15.52787 -15.41744 -14.95005 -14.82031 -14.76190 -14.31511 -14.16184 -13.77332 -13.73187 -13.55740 -13.23002 -13.04361 -12.92884 -12.88084 -12.80707 -12.72701 -12.64763 -12.36648 -12.17470 -12.11945 -11.93183 -11.82025 -11.57840 -11.39851 -10.95684 -10.61015 -9.62330 -9.39623 -9.04260 -8.90433 -7.84019 -5.13772 0.31649 0.35234 1.42056 1.44709 1.52707 1.86318 2.03252 2.21170 2.28539 2.57151 2.76526 3.17754 3.44888 3.57826 3.59553 3.81093 3.90009 4.05043 4.13729 4.18907 4.23754 4.27663 4.33318 4.36802 4.45196 4.49583 4.53815 4.62384 4.64595 4.69882 4.73309 4.81984 4.91885 4.95218 5.01580 5.08029 5.22240 5.23618 5.27288 5.47437 5.50889 5.54205 5.75142 5.80268 5.95516 6.32968 6.44072 6.60367 7.38894 7.49438 8.27974 8.51235 9.36543 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.003888 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.743936 B = 7199.264517 C = 8324.142386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.050 0.950 4 C 0.117 3.883 5 N -0.612 5.612 6 C 0.074 3.926 7 C 0.507 3.493 8 O -0.564 6.564 9 C -0.116 4.116 10 C 0.069 3.931 11 H 0.044 0.956 12 C 0.033 3.967 13 O -0.323 6.323 14 C 0.022 3.978 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.135 4.135 19 C 0.029 3.971 20 O -0.311 6.311 21 N -0.738 5.738 22 C -0.233 4.233 23 H 0.072 0.928 24 C -0.077 4.077 25 N -0.961 5.961 26 Si 0.964 3.036 27 H -0.294 1.294 28 H -0.300 1.300 29 H -0.265 1.265 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.103 0.897 42 H 0.149 0.851 43 H 0.168 0.832 44 H 0.162 0.838 45 H 0.130 0.870 46 H 0.384 0.616 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.599 -2.676 -15.469 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.068 0.932 4 C -0.007 4.007 5 N -0.345 5.345 6 C -0.067 4.067 7 C 0.296 3.704 8 O -0.442 6.442 9 C -0.155 4.155 10 C 0.012 3.988 11 H 0.062 0.938 12 C -0.042 4.042 13 O -0.237 6.237 14 C -0.023 4.023 15 C -0.142 4.142 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.154 4.154 19 C -0.016 4.016 20 O -0.226 6.226 21 N -0.383 5.383 22 C -0.365 4.365 23 H 0.090 0.910 24 C -0.269 4.269 25 N -0.612 5.612 26 Si 0.794 3.206 27 H -0.222 1.222 28 H -0.227 1.227 29 H -0.190 1.190 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.121 0.879 42 H 0.167 0.833 43 H 0.185 0.815 44 H 0.180 0.820 45 H 0.148 0.852 46 H 0.221 0.779 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.259 -2.902 -15.136 19.086 hybrid contribution -0.454 0.331 1.527 1.627 sum 10.805 -2.571 -13.609 17.566 Atomic orbital electron populations 1.22269 0.97841 1.00300 1.01141 1.20968 0.92860 0.95606 0.87000 0.93172 1.21727 0.80030 1.00770 0.98178 1.47723 1.06852 1.21399 1.58534 1.22038 0.95474 0.90077 0.99156 1.20787 0.91212 0.81547 0.76855 1.90710 1.65639 1.41633 1.46244 1.21657 0.92835 0.95997 1.05046 1.22771 0.95657 0.85953 0.94395 0.93798 1.23859 0.93044 0.86013 1.01323 1.86237 1.65611 1.14386 1.57512 1.19320 0.93724 0.88742 1.00497 1.20806 1.01929 0.88905 1.02554 1.21330 0.95939 0.98629 0.97340 1.21305 0.96596 0.96669 0.98421 1.20753 1.00952 0.90352 1.03319 1.19418 0.93752 0.87129 1.01285 1.86321 1.67623 1.14148 1.54485 1.43016 1.77961 1.11457 1.05855 1.19595 1.34384 0.93883 0.88670 0.91040 1.25508 1.03679 0.96669 1.01085 1.69971 1.52593 1.10181 1.28405 0.85270 0.76562 0.78262 0.80471 1.22152 1.22694 1.18975 0.95045 0.94617 0.90074 0.86432 0.93137 0.90084 0.90166 0.90220 0.84768 0.84560 0.83774 0.87877 0.83284 0.81453 0.82014 0.85202 0.77928 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 9.49 71.98 0.68 -4.95 16 2 C 0.15 5.79 3.20 44.99 0.14 5.93 16 3 H 0.05 1.92 8.08 -2.38 -0.02 1.90 16 4 C 0.12 3.86 5.14 86.38 0.44 4.30 16 5 N -0.61 -19.34 2.77 -846.76 -2.35 -21.69 16 6 C 0.07 1.44 10.24 127.77 1.31 2.75 16 7 C 0.51 19.61 6.86 87.66 0.60 20.22 16 8 O -0.56 -28.81 12.79 9.23 0.12 -28.69 16 9 C -0.12 -3.32 3.98 29.85 0.12 -3.20 16 10 C 0.07 2.43 2.55 30.75 0.08 2.51 16 11 H 0.04 2.06 7.94 -2.39 -0.02 2.04 16 12 C 0.03 0.86 6.56 72.14 0.47 1.33 16 13 O -0.32 -10.41 10.42 -82.53 -0.86 -11.27 16 14 C 0.02 0.72 6.49 22.56 0.15 0.86 16 15 C -0.12 -3.20 9.96 22.37 0.22 -2.98 16 16 C -0.11 -2.40 10.04 22.26 0.22 -2.18 16 17 C -0.11 -2.55 10.04 22.26 0.22 -2.32 16 18 C -0.14 -4.10 9.96 22.37 0.22 -3.88 16 19 C 0.03 1.03 6.49 22.56 0.15 1.18 16 20 O -0.31 -11.88 9.40 -72.06 -0.68 -12.56 16 21 N -0.74 -39.38 4.52 -322.95 -1.46 -40.84 16 22 C -0.23 -13.40 9.93 84.03 0.83 -12.57 16 23 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 25 N -0.96 -63.12 13.06 21.65 0.28 -62.84 16 26 Si 0.96 48.06 29.55 68.60 2.03 50.09 16 27 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 29 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 30 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.12 2.72 8.07 -2.39 -0.02 2.70 16 34 H 0.05 1.96 7.42 -2.39 -0.02 1.95 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.41 8.07 -2.39 -0.02 1.39 16 37 H 0.08 1.35 6.44 -2.39 -0.02 1.33 16 38 H 0.13 3.23 7.40 -2.39 -0.02 3.21 16 39 H 0.14 2.73 8.11 -2.39 -0.02 2.72 16 40 H 0.14 3.02 8.14 -2.38 -0.02 3.00 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 43 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 45 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 46 H 0.38 23.04 5.02 -92.71 -0.47 22.58 16 47 H 0.24 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -87.70 384.05 3.92 -83.77 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: 0.50 Total: 41.20 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 6.34 Total: 2.83 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -3.53 Total: -125.37 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -1.42 Total: -52.52 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -87.70 3.92 -83.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331456972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.504 kcal (2) G-P(sol) polarization free energy of solvation -87.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds