Wall clock time and date at job start Tue Mar 31 2020 17:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47432 * 2 1 4 4 C 1.52993 * 109.47198 * 239.99586 * 2 1 3 5 5 N 1.46507 * 109.47231 * 185.00154 * 4 2 1 6 6 C 1.46502 * 119.99757 * 270.00075 * 5 4 2 7 7 C 1.34769 * 120.00012 * 89.99977 * 5 4 2 8 8 O 1.21283 * 120.00198 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00341 * 180.02562 * 7 5 4 10 10 C 1.53000 * 109.47545 * 180.02562 * 9 7 5 11 11 H 1.09000 * 109.74078 * 54.38910 * 10 9 7 12 12 C 1.53472 * 109.71122 * 174.99957 * 10 9 7 13 13 O 1.43178 * 108.28542 * 179.45635 * 12 10 9 14 14 C 1.36106 * 116.71532 * 313.84379 * 13 12 10 15 15 C 1.38704 * 119.39538 * 197.05986 * 14 13 12 16 16 C 1.38190 * 120.06797 * 180.20227 * 15 14 13 17 17 C 1.38250 * 120.11738 * 359.97074 * 16 15 14 18 18 C 1.38199 * 120.10941 * 359.94719 * 17 16 15 19 19 C 1.38703 * 120.06325 * 0.02945 * 18 17 16 20 20 O 1.36113 * 119.38520 * 180.13958 * 19 18 17 21 21 N 1.46508 * 109.47081 * 119.99468 * 2 1 3 22 22 C 1.36935 * 120.00153 * 275.00206 * 21 2 1 23 23 H 1.08002 * 120.00074 * 359.97438 * 22 21 2 24 24 C 1.38814 * 119.99892 * 179.97438 * 22 21 2 25 25 N 1.31625 * 119.99904 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 119.99912 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47425 * 60.00157 * 26 24 22 28 28 H 1.48507 * 109.47205 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47330 * 299.99674 * 26 24 22 30 30 H 1.08994 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 300.00505 * 1 2 3 32 32 H 1.08995 * 109.46733 * 60.00035 * 1 2 3 33 33 H 1.08997 * 109.47007 * 65.00565 * 4 2 1 34 34 H 1.08996 * 109.47508 * 305.00103 * 4 2 1 35 35 H 1.08998 * 109.47385 * 269.99756 * 6 5 4 36 36 H 1.08998 * 109.47186 * 30.00098 * 6 5 4 37 37 H 1.09004 * 109.46404 * 149.99866 * 6 5 4 38 38 H 1.09004 * 109.47203 * 59.99801 * 9 7 5 39 39 H 1.09000 * 109.47222 * 300.00325 * 9 7 5 40 40 H 1.09002 * 109.70847 * 59.74385 * 12 10 9 41 41 H 1.09003 * 109.70832 * 299.16800 * 12 10 9 42 42 H 1.08001 * 119.96524 * 0.13923 * 15 14 13 43 43 H 1.08005 * 119.94489 * 179.97438 * 16 15 14 44 44 H 1.07999 * 119.95032 * 179.97438 * 17 16 15 45 45 H 1.08001 * 119.96808 * 180.02562 * 18 17 16 46 46 H 0.97003 * 119.99320 * 94.99562 * 21 2 1 47 47 H 0.96999 * 119.99426 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.3344 0.2340 -1.7612 7 6 4.0757 -1.8987 -0.6114 8 8 3.3851 -2.7763 -0.1385 9 6 5.5776 -2.0066 -0.5505 10 6 5.9673 -3.3090 0.1516 11 1 5.4848 -4.1523 -0.3425 12 6 7.4912 -3.4855 0.1064 13 8 7.8226 -4.7040 0.7813 14 6 7.2211 -4.9210 1.9828 15 6 7.7448 -5.8738 2.8441 16 6 7.1428 -6.1084 4.0656 17 6 6.0175 -5.3942 4.4330 18 6 5.4916 -4.4423 3.5803 19 6 6.0913 -4.2015 2.3530 20 8 5.5634 -3.2588 1.5252 21 7 2.0184 -0.6905 1.1963 22 6 2.1491 -0.0073 2.3758 23 1 1.8926 1.0407 2.4242 24 6 2.6113 -0.6618 3.5094 25 7 2.9234 -1.9392 3.4506 26 14 2.7890 0.2699 5.1186 27 1 1.4664 0.8067 5.5285 28 1 3.2981 -0.6484 6.1687 29 1 3.7444 1.3924 4.9378 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.7517 -0.1584 -2.1369 34 1 1.6054 -1.7198 -1.2950 35 1 4.5426 0.0092 -2.8072 36 1 3.8091 1.1865 -1.6918 37 1 5.2722 0.2951 -1.2090 38 1 5.9806 -1.1595 0.0047 39 1 5.9834 -2.0041 -1.5621 40 1 7.9735 -2.6455 0.6063 41 1 7.8247 -3.5369 -0.9301 42 1 8.6234 -6.4336 2.5593 43 1 7.5520 -6.8511 4.7345 44 1 5.5490 -5.5801 5.3881 45 1 4.6127 -3.8853 3.8698 46 1 2.2490 -1.6317 1.1527 47 1 3.2467 -2.3963 4.2426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331456974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:31 Heat of formation + Delta-G solvation = -56.236345 kcal Electronic energy + Delta-G solvation = -30657.578929 eV Core-core repulsion = 26614.112515 eV Total energy + Delta-G solvation = -4043.466414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94672 -39.40325 -37.37542 -36.83084 -35.83438 -34.30588 -32.67270 -31.78022 -30.26475 -29.00010 -28.51400 -27.36927 -26.79871 -25.12533 -23.61563 -23.13652 -22.28878 -20.45129 -19.90587 -18.90620 -18.25811 -17.33667 -17.12880 -16.50894 -16.30886 -15.63895 -15.28486 -14.86892 -14.79076 -14.38817 -14.30731 -13.99834 -13.69413 -13.61313 -13.27110 -13.10776 -12.92654 -12.79146 -12.53328 -12.25248 -12.12607 -11.85903 -11.73138 -11.56830 -11.38516 -11.32461 -11.13168 -10.89930 -10.74200 -10.59128 -10.58116 -10.29871 -10.04097 -9.94026 -9.44223 -9.14757 -8.73377 -8.24321 -8.04374 -7.64865 -6.70144 -5.50208 -2.79822 1.66771 1.72645 3.18759 3.31681 3.45614 3.51351 3.56232 3.56518 3.61714 4.13162 4.37624 4.73060 4.79388 4.88866 4.98116 5.08803 5.21990 5.28824 5.33658 5.39444 5.48156 5.50576 5.58022 5.60149 5.72371 5.75177 5.80478 5.85647 5.91530 5.95085 6.07583 6.14452 6.28709 6.33609 6.44564 6.51692 6.70400 6.74398 6.86942 6.87372 7.00845 7.04646 7.20382 7.30416 7.85479 7.87321 7.95042 8.64469 8.83363 9.77538 10.40452 10.80324 11.67263 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010135 B = 0.005245 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.057652 B = 5337.356851 C = 7363.892705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 H 0.040 0.960 4 C 0.111 3.889 5 N -0.611 5.611 6 C 0.084 3.916 7 C 0.524 3.476 8 O -0.502 6.502 9 C -0.129 4.129 10 C 0.067 3.933 11 H 0.087 0.913 12 C 0.026 3.974 13 O -0.311 6.311 14 C 0.031 3.969 15 C -0.123 4.123 16 C -0.130 4.130 17 C -0.120 4.120 18 C -0.102 4.102 19 C 0.073 3.927 20 O -0.255 6.255 21 N -0.719 5.719 22 C -0.243 4.243 23 H 0.060 0.940 24 C -0.006 4.006 25 N -0.902 5.902 26 Si 0.892 3.108 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.156 0.844 46 H 0.400 0.600 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.608 -2.183 -10.477 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.058 0.942 4 C -0.012 4.012 5 N -0.346 5.346 6 C -0.060 4.060 7 C 0.311 3.689 8 O -0.375 6.375 9 C -0.169 4.169 10 C 0.009 3.991 11 H 0.105 0.895 12 C -0.050 4.050 13 O -0.226 6.226 14 C -0.014 4.014 15 C -0.141 4.141 16 C -0.149 4.149 17 C -0.138 4.138 18 C -0.121 4.121 19 C 0.027 3.973 20 O -0.168 6.168 21 N -0.365 5.365 22 C -0.375 4.375 23 H 0.078 0.922 24 C -0.203 4.203 25 N -0.549 5.549 26 Si 0.724 3.276 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.134 0.866 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.173 0.827 46 H 0.239 0.761 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.267 -2.559 -10.133 13.968 hybrid contribution 0.154 0.677 0.869 1.113 sum 9.421 -1.882 -9.264 13.346 Atomic orbital electron populations 1.22422 0.99366 1.00882 0.99788 1.20613 0.91897 0.95447 0.87748 0.94183 1.21809 0.79284 1.01972 0.98121 1.47556 1.06686 1.21015 1.59335 1.21676 0.95720 0.91345 0.97275 1.19971 0.89551 0.81921 0.77501 1.90732 1.64054 1.39649 1.43078 1.21616 0.95569 0.98262 1.01444 1.22753 0.93479 0.99289 0.83543 0.89518 1.23637 0.95787 0.86777 0.98836 1.86233 1.65674 1.39767 1.30895 1.18952 0.93744 1.00812 0.87855 1.20256 1.01176 0.99460 0.93230 1.20789 0.97072 1.01049 0.95956 1.20949 0.96682 0.96452 0.99732 1.20983 1.00987 0.98185 0.91937 1.19065 0.92060 0.92949 0.93251 1.86787 1.65132 1.47872 1.17021 1.42693 1.77586 1.11799 1.04461 1.19053 1.37281 0.93419 0.87751 0.92200 1.24677 1.02504 0.95898 0.97242 1.69799 1.49620 1.07872 1.27614 0.86516 0.77463 0.78741 0.84847 1.21707 1.21841 1.21806 0.93444 0.92728 0.94785 0.91351 0.90409 0.93387 0.91286 0.91494 0.87735 0.87699 0.90726 0.86577 0.85648 0.85819 0.85572 0.82665 0.76094 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.49 37.16 0.35 -2.70 16 2 C 0.15 3.14 3.20 -67.93 -0.22 2.93 16 3 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 4 C 0.11 1.88 5.14 -4.04 -0.02 1.86 16 5 N -0.61 -9.87 2.77 -181.57 -0.50 -10.37 16 6 C 0.08 0.95 10.24 59.85 0.61 1.56 16 7 C 0.52 9.68 6.86 -10.99 -0.08 9.61 16 8 O -0.50 -11.68 12.79 -7.22 -0.09 -11.77 16 9 C -0.13 -1.83 3.98 -27.88 -0.11 -1.94 16 10 C 0.07 1.09 2.55 -26.49 -0.07 1.02 16 11 H 0.09 1.48 7.94 -51.93 -0.41 1.07 16 12 C 0.03 0.33 6.56 37.40 0.25 0.58 16 13 O -0.31 -4.89 10.42 -32.85 -0.34 -5.23 16 14 C 0.03 0.54 6.49 -39.14 -0.25 0.28 16 15 C -0.12 -1.85 9.96 -39.43 -0.39 -2.24 16 16 C -0.13 -1.86 10.04 -39.59 -0.40 -2.25 16 17 C -0.12 -1.94 10.04 -39.59 -0.40 -2.34 16 18 C -0.10 -2.05 9.96 -39.42 -0.39 -2.44 16 19 C 0.07 1.46 6.49 -39.14 -0.25 1.20 16 20 O -0.26 -5.43 9.41 -43.74 -0.41 -5.84 16 21 N -0.72 -18.67 4.52 -53.42 -0.24 -18.91 16 22 C -0.24 -6.92 9.93 -15.06 -0.15 -7.06 16 23 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.90 -27.10 12.87 55.49 0.71 -26.38 16 26 Si 0.89 22.90 29.55 -169.99 -5.02 17.88 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.08 1.45 7.42 -51.93 -0.39 1.06 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 38 H 0.10 1.48 7.40 -51.93 -0.38 1.09 16 39 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 44 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.16 3.55 6.62 -52.49 -0.35 3.20 16 46 H 0.40 11.32 5.02 -40.82 -0.20 11.11 16 47 H 0.25 7.24 7.10 -40.82 -0.29 6.95 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -35.75 381.22 -8.82 -44.57 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -7.05 Total: 12.51 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.62 Total: -2.20 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.03 Total: -55.67 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.85 Total: -22.84 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.75 -8.82 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331456974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.667 kcal (2) G-P(sol) polarization free energy of solvation -35.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds