Wall clock time and date at job start Tue Mar 31 2020 17:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47432 * 2 1 4 4 C 1.52993 * 109.47198 * 239.99586 * 2 1 3 5 5 N 1.46507 * 109.47231 * 185.00154 * 4 2 1 6 6 C 1.46502 * 119.99757 * 270.00075 * 5 4 2 7 7 C 1.34769 * 120.00012 * 89.99977 * 5 4 2 8 8 O 1.21283 * 120.00198 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00341 * 180.02562 * 7 5 4 10 10 C 1.53000 * 109.47545 * 180.02562 * 9 7 5 11 11 H 1.09000 * 109.74078 * 54.38910 * 10 9 7 12 12 C 1.53472 * 109.71122 * 174.99957 * 10 9 7 13 13 O 1.43178 * 108.28542 * 179.45635 * 12 10 9 14 14 C 1.36106 * 116.71532 * 313.84379 * 13 12 10 15 15 C 1.38704 * 119.39538 * 197.05986 * 14 13 12 16 16 C 1.38190 * 120.06797 * 180.20227 * 15 14 13 17 17 C 1.38250 * 120.11738 * 359.97074 * 16 15 14 18 18 C 1.38199 * 120.10941 * 359.94719 * 17 16 15 19 19 C 1.38703 * 120.06325 * 0.02945 * 18 17 16 20 20 O 1.36113 * 119.38520 * 180.13958 * 19 18 17 21 21 N 1.46508 * 109.47081 * 119.99468 * 2 1 3 22 22 C 1.36935 * 120.00153 * 275.00206 * 21 2 1 23 23 H 1.08002 * 120.00074 * 359.97438 * 22 21 2 24 24 C 1.38814 * 119.99892 * 179.97438 * 22 21 2 25 25 N 1.31625 * 119.99904 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 119.99912 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47425 * 60.00157 * 26 24 22 28 28 H 1.48507 * 109.47205 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47330 * 299.99674 * 26 24 22 30 30 H 1.08994 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 300.00505 * 1 2 3 32 32 H 1.08995 * 109.46733 * 60.00035 * 1 2 3 33 33 H 1.08997 * 109.47007 * 65.00565 * 4 2 1 34 34 H 1.08996 * 109.47508 * 305.00103 * 4 2 1 35 35 H 1.08998 * 109.47385 * 269.99756 * 6 5 4 36 36 H 1.08998 * 109.47186 * 30.00098 * 6 5 4 37 37 H 1.09004 * 109.46404 * 149.99866 * 6 5 4 38 38 H 1.09004 * 109.47203 * 59.99801 * 9 7 5 39 39 H 1.09000 * 109.47222 * 300.00325 * 9 7 5 40 40 H 1.09002 * 109.70847 * 59.74385 * 12 10 9 41 41 H 1.09003 * 109.70832 * 299.16800 * 12 10 9 42 42 H 1.08001 * 119.96524 * 0.13923 * 15 14 13 43 43 H 1.08005 * 119.94489 * 179.97438 * 16 15 14 44 44 H 1.07999 * 119.95032 * 179.97438 * 17 16 15 45 45 H 1.08001 * 119.96808 * 180.02562 * 18 17 16 46 46 H 0.97003 * 119.99320 * 94.99562 * 21 2 1 47 47 H 0.96999 * 119.99426 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.3344 0.2340 -1.7612 7 6 4.0757 -1.8987 -0.6114 8 8 3.3851 -2.7763 -0.1385 9 6 5.5776 -2.0066 -0.5505 10 6 5.9673 -3.3090 0.1516 11 1 5.4848 -4.1523 -0.3425 12 6 7.4912 -3.4855 0.1064 13 8 7.8226 -4.7040 0.7813 14 6 7.2211 -4.9210 1.9828 15 6 7.7448 -5.8738 2.8441 16 6 7.1428 -6.1084 4.0656 17 6 6.0175 -5.3942 4.4330 18 6 5.4916 -4.4423 3.5803 19 6 6.0913 -4.2015 2.3530 20 8 5.5634 -3.2588 1.5252 21 7 2.0184 -0.6905 1.1963 22 6 2.1491 -0.0073 2.3758 23 1 1.8926 1.0407 2.4242 24 6 2.6113 -0.6618 3.5094 25 7 2.9234 -1.9392 3.4506 26 14 2.7890 0.2699 5.1186 27 1 1.4664 0.8067 5.5285 28 1 3.2981 -0.6484 6.1687 29 1 3.7444 1.3924 4.9378 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.7517 -0.1584 -2.1369 34 1 1.6054 -1.7198 -1.2950 35 1 4.5426 0.0092 -2.8072 36 1 3.8091 1.1865 -1.6918 37 1 5.2722 0.2951 -1.2090 38 1 5.9806 -1.1595 0.0047 39 1 5.9834 -2.0041 -1.5621 40 1 7.9735 -2.6455 0.6063 41 1 7.8247 -3.5369 -0.9301 42 1 8.6234 -6.4336 2.5593 43 1 7.5520 -6.8511 4.7345 44 1 5.5490 -5.5801 5.3881 45 1 4.6127 -3.8853 3.8698 46 1 2.2490 -1.6317 1.1527 47 1 3.2467 -2.3963 4.2426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331456974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:30 Heat of formation + Delta-G solvation = -80.067189 kcal Electronic energy + Delta-G solvation = -30658.612312 eV Core-core repulsion = 26614.112515 eV Total energy + Delta-G solvation = -4044.499797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19787 -40.76019 -38.62969 -38.11886 -37.42942 -35.86569 -34.10593 -33.54359 -31.53993 -30.58475 -30.12214 -28.63316 -27.88814 -26.40635 -25.57818 -24.50549 -23.58983 -21.77944 -21.38870 -20.24902 -19.55080 -19.18244 -18.47599 -17.75599 -17.68125 -17.00009 -16.75016 -16.39218 -16.08836 -15.85073 -15.58400 -15.47664 -15.33018 -14.94592 -14.60455 -14.60321 -14.28903 -14.08782 -13.79320 -13.64443 -13.52720 -13.22002 -13.05825 -12.86560 -12.83966 -12.72546 -12.67530 -12.59926 -12.38734 -12.12632 -12.06136 -11.84455 -11.79224 -11.52588 -11.24794 -10.86773 -10.57186 -9.54224 -9.36829 -8.95258 -8.78958 -7.70820 -5.00765 0.37424 0.43584 1.41918 1.44252 1.50020 1.87139 2.15476 2.26425 2.40343 2.60836 2.83491 3.25248 3.53839 3.62368 3.66424 3.83661 3.94608 4.09839 4.17870 4.22121 4.30317 4.33419 4.38378 4.43679 4.47784 4.56040 4.58262 4.65168 4.67058 4.72688 4.75864 4.82935 4.95887 5.00894 5.04262 5.10578 5.27944 5.29388 5.35204 5.50323 5.57115 5.62831 5.78971 5.82634 6.08199 6.44158 6.60810 6.65802 7.46678 7.55606 8.37255 8.62169 9.45974 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010135 B = 0.005245 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.057652 B = 5337.356851 C = 7363.892705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.043 0.957 4 C 0.117 3.883 5 N -0.613 5.613 6 C 0.075 3.925 7 C 0.508 3.492 8 O -0.564 6.564 9 C -0.118 4.118 10 C 0.058 3.942 11 H 0.066 0.934 12 C 0.031 3.969 13 O -0.313 6.313 14 C 0.024 3.976 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.142 4.142 19 C 0.042 3.958 20 O -0.299 6.299 21 N -0.735 5.735 22 C -0.246 4.246 23 H 0.062 0.938 24 C -0.064 4.064 25 N -0.927 5.927 26 Si 0.952 3.048 27 H -0.285 1.285 28 H -0.300 1.300 29 H -0.283 1.283 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.162 0.838 40 H 0.081 0.919 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.169 0.831 44 H 0.144 0.856 45 H 0.112 0.888 46 H 0.387 0.613 47 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.028 -1.497 -12.425 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.061 0.939 4 C -0.006 4.006 5 N -0.346 5.346 6 C -0.067 4.067 7 C 0.296 3.704 8 O -0.441 6.441 9 C -0.157 4.157 10 C 0.001 3.999 11 H 0.084 0.916 12 C -0.044 4.044 13 O -0.228 6.228 14 C -0.021 4.021 15 C -0.136 4.136 16 C -0.133 4.133 17 C -0.139 4.139 18 C -0.161 4.161 19 C -0.004 4.004 20 O -0.214 6.214 21 N -0.380 5.380 22 C -0.379 4.379 23 H 0.080 0.920 24 C -0.259 4.259 25 N -0.576 5.576 26 Si 0.783 3.217 27 H -0.212 1.212 28 H -0.226 1.226 29 H -0.210 1.210 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.180 0.820 40 H 0.099 0.901 41 H 0.183 0.817 42 H 0.177 0.823 43 H 0.186 0.814 44 H 0.162 0.838 45 H 0.130 0.870 46 H 0.223 0.777 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.685 -1.793 -12.141 16.946 hybrid contribution -0.649 0.500 1.384 1.608 sum 11.037 -1.293 -10.757 15.466 Atomic orbital electron populations 1.22265 0.98008 1.00257 1.00914 1.20937 0.92798 0.95405 0.87342 0.93868 1.21714 0.80087 1.00806 0.98021 1.47736 1.06801 1.21459 1.58560 1.22020 0.95294 0.90066 0.99297 1.20812 0.91266 0.81704 0.76569 1.90705 1.65684 1.42044 1.45712 1.21701 0.92625 0.97169 1.04242 1.22999 0.95722 0.99660 0.81512 0.91600 1.23898 0.93117 0.86134 1.01241 1.86212 1.65265 1.41062 1.30253 1.19155 0.93147 1.00910 0.88844 1.20760 1.01700 0.98342 0.92828 1.21249 0.95414 1.00497 0.96167 1.21199 0.97438 0.95487 0.99792 1.20914 1.01026 1.00318 0.93838 1.19318 0.93564 0.94062 0.93412 1.86721 1.66702 1.48708 1.19239 1.42909 1.78031 1.11431 1.05594 1.19351 1.36113 0.93506 0.88891 0.92023 1.25395 1.03452 0.96801 1.00241 1.69979 1.50692 1.09110 1.27843 0.85558 0.77447 0.77482 0.81251 1.21155 1.22650 1.21006 0.94935 0.94901 0.90232 0.86529 0.92888 0.89459 0.90646 0.90667 0.87657 0.82042 0.90078 0.81679 0.82310 0.81392 0.83820 0.86976 0.77656 0.94908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.69 9.49 71.98 0.68 -5.00 16 2 C 0.15 5.89 3.20 44.99 0.14 6.03 16 3 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 4 C 0.12 3.85 5.14 86.38 0.44 4.30 16 5 N -0.61 -19.05 2.77 -846.77 -2.35 -21.40 16 6 C 0.08 1.45 10.24 127.77 1.31 2.76 16 7 C 0.51 19.07 6.86 87.66 0.60 19.67 16 8 O -0.56 -27.97 12.79 9.18 0.12 -27.85 16 9 C -0.12 -3.23 3.98 29.85 0.12 -3.12 16 10 C 0.06 1.92 2.55 30.75 0.08 2.00 16 11 H 0.07 2.38 7.94 -2.39 -0.02 2.36 16 12 C 0.03 0.75 6.56 72.14 0.47 1.22 16 13 O -0.31 -9.40 10.42 -82.54 -0.86 -10.25 16 14 C 0.02 0.84 6.49 22.56 0.15 0.99 16 15 C -0.12 -3.31 9.96 22.37 0.22 -3.09 16 16 C -0.12 -3.05 10.04 22.26 0.22 -2.83 16 17 C -0.12 -4.01 10.04 22.26 0.22 -3.78 16 18 C -0.14 -6.17 9.96 22.37 0.22 -5.95 16 19 C 0.04 1.79 6.49 22.56 0.15 1.94 16 20 O -0.30 -13.68 9.41 -72.24 -0.68 -14.36 16 21 N -0.73 -39.59 4.52 -322.93 -1.46 -41.05 16 22 C -0.25 -14.45 9.93 84.03 0.83 -13.61 16 23 H 0.06 3.51 7.83 -2.91 -0.02 3.48 16 24 C -0.06 -3.89 5.50 84.86 0.47 -3.43 16 25 N -0.93 -59.51 12.87 21.65 0.28 -59.23 16 26 Si 0.95 49.00 29.55 68.60 2.03 51.02 16 27 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 29 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.12 2.67 8.07 -2.39 -0.02 2.65 16 34 H 0.05 2.01 7.42 -2.39 -0.02 2.00 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.38 8.07 -2.39 -0.02 1.36 16 37 H 0.07 1.34 6.44 -2.39 -0.02 1.33 16 38 H 0.11 2.88 7.40 -2.38 -0.02 2.86 16 39 H 0.16 2.41 8.11 -2.39 -0.02 2.39 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.17 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 43 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 45 H 0.11 5.79 6.62 -2.91 -0.02 5.77 16 46 H 0.39 23.19 5.02 -92.71 -0.47 22.72 16 47 H 0.24 15.24 7.10 -92.71 -0.66 14.59 16 Total: -1.00 -87.58 381.22 4.03 -83.55 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: 0.62 Total: 41.48 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 6.34 Total: -1.91 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -3.53 Total: -121.68 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -1.42 Total: -52.46 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.02 kcal Total: -87.58 4.03 -83.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331456974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.481 kcal (2) G-P(sol) polarization free energy of solvation -87.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds